RchiOBHm_Chr2g0099101

Belongs to the peroxidase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0003986
Physical Location & Seq
Forward (+)
11404199 .. 11406221
2023 bp
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UTR
Exon/CDS
Intron
PRQ47383

Sequence Viewer

Length: 870 bp
ATGGCGGAACCTGTCGTAGTAGACGCGCAGTACCTGAAAGAAATCGAGAAGGCTCGTCGGGACCTCCGCGCTCTCATCTCCAACCGCAACTGCGCTCCCATCATGCTTCGTCTGGCGTGGCACGATGCTGGAACTTACAACGCTGAAACGAAGACTGGAGGGGCAACTGGCTCCATCAGGAATGAGCATGAGTTGGGCCATGCAGCTAATAGTGGTTTGAAAATTGCTGTTAATTTTTGTGAGGAAGTGAAGGCCAAACATCCGAAAATCACATATGCTGACCTTTACCAGCTTGCTGGGGTTGTTGCAGTTGAGGTCACCGGAGGCCCTACTATTGAGTTTGTTCCCGGTAGGAAGGATTCATTGGAATCTCCTGAAGAAGGAAGGCTTCCAGATGCCAAAAAAGGTGCACCACATTTGAAGGACATCTTTTACCGCATGGGTCTGTCTGATAAGGACATTGTCGCACTGTCTGGAGCCCATACATTGGGTAGAGCACATCCAGAAAGGTCCGGCTTTGATGGCCCTTGGACAAAAGAGCCTCTGAAGTTTGACAATTCATACTTTGTGGAGCTACTGAAAGGAGAATCAGAGGGGCTGTTGAAACTACCCACAGACAAGGCTTTATTGGATGATCCTGCGTTCCGCCCCTACGTTGAACTTTATGCAAAGGATGAGGATGCATTTTTCAGAGACTATGCAGCATCACAGAAGAAACTGTCAGAGCTAGGCTTCACTCCACCTCCATCTAGTCTCAAGGAAGCTGAAAAGACTAGTGTCGTAGTGGCACAAAGTGCTGTGGGAGTTGCAGTGGCAGCTGCGGTGGTGATTCTGGGTTACTTATACGAAGTTCATAAAAGAGTCAAGTGA

Protein Analysis

289

Amino Acids

31.61

Weight (kDa)

6.27

Isoelectric Point (pI)

36.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 19 - 225 5.5e-49 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 487
AccI GTMKAC 1 cut(s) 21
AccII CGCG 2 cut(s) 26, 69
AciI CCGC 6 cut(s) 5, 67, 85, 436, 646, 821
AclWI GGATC 1 cut(s) 629
AcuI CTGAAG 2 cut(s) 396, 566
AdeI CACNNNGTG 1 cut(s) 794
AfaI GTAC 1 cut(s) 32
AfiI CCNNNNNNNGG 2 cut(s) 380, 487
AgsI TTSAA 4 cut(s) 220, 421, 604, 659
AhlI ACTAGT 1 cut(s) 773
AjuI GAANNNNNNNTTGG 2 cut(s) 347, 379
AluBI AGCT 6 cut(s) 206, 292, 574, 727, 764, 818
AluI AGCT 6 cut(s) 206, 292, 574, 727, 764, 818
Alw21I GWGCWC 2 cut(s) 412, 499
Alw26I GTCTC 2 cut(s) 687, 758
Alw44I GTGCAC 1 cut(s) 408
AlwI GGATC 1 cut(s) 629
AlwNI CAGNNNCTG 1 cut(s) 34
AoxI GGCC 4 cut(s) 196, 252, 325, 523
ApaLI GTGCAC 1 cut(s) 408
ApeKI GCWGC 4 cut(s) 203, 701, 815, 818
AspLEI GCGC 3 cut(s) 28, 71, 95
AspS9I GGNCC 5 cut(s) 61, 196, 326, 510, 524
AsuC2I CCSGG 1 cut(s) 348
AsuHPI GGTGA 2 cut(s) 310, 838
AvaII GGWCC 2 cut(s) 61, 510
BaeGI GKGCMC 1 cut(s) 412
BanII GRGCYC 1 cut(s) 481
BbsI GAAGAC 1 cut(s) 158
Bbv12I GWGCWC 2 cut(s) 412, 499
BbvI GCAGC 4 cut(s) 215, 713, 805, 827
BccI CCATC 4 cut(s) 107, 182, 515, 754
BcnI CCSGG 1 cut(s) 348
BcoDI GTCTC 2 cut(s) 687, 758
BcuI ACTAGT 1 cut(s) 773
BfaI CTAG 3 cut(s) 728, 750, 774
BisI GCNGC 4 cut(s) 204, 702, 816, 819
BlsI GCNGC 4 cut(s) 205, 703, 817, 820
Bme1390I CCNGG 1 cut(s) 348
Bme18I GGWCC 2 cut(s) 61, 510
BmgT120I GGNCC 5 cut(s) 61, 196, 326, 510, 524
BmiI GGNNCC 4 cut(s) 9, 62, 172, 478
BmrFI CCNGG 1 cut(s) 348
BmsI GCATC 4 cut(s) 115, 385, 670, 713
BoxI GACNNNNGTC 1 cut(s) 776
BpiI GAAGAC 1 cut(s) 158
BpmI CTGGAG 2 cut(s) 177, 495
BpuEI CTTGAG 1 cut(s) 740
BpuMI CCSGG 1 cut(s) 348
BsaJI CCNNGG 1 cut(s) 527
BsaWI WCCGGW 1 cut(s) 320
BsaXI ACNNNNNCTCC 4 cut(s) 727, 757, 795, 825
Bsc4I CCNNNNNNNGG 2 cut(s) 380, 487
Bse1I ACTGG 2 cut(s) 160, 172
BseDI CCNNGG 1 cut(s) 527
BseGI GGATG 5 cut(s) 259, 499, 637, 679, 685
BseLI CCNNNNNNNGG 2 cut(s) 380, 487
BseNI ACTGG 2 cut(s) 160, 172
BseSI GKGCMC 1 cut(s) 412
BseXI GCAGC 4 cut(s) 215, 713, 805, 827
BseYI CCCAGC 1 cut(s) 296
Bsh1236I CGCG 2 cut(s) 26, 69
BshFI GGCC 4 cut(s) 198, 254, 327, 525
BsiHKAI GWGCWC 2 cut(s) 412, 499
BsiSI CCGG 3 cut(s) 321, 348, 513
BslFI GGGAC 1 cut(s) 74
BslI CCNNNNNNNGG 2 cut(s) 380, 487
BsmAI GTCTC 2 cut(s) 687, 758
BsmFI GGGAC 1 cut(s) 74
BsnI GGCC 4 cut(s) 198, 254, 327, 525
Bsp1286I GDGCHC 3 cut(s) 412, 481, 499
Bsp143I GATC 1 cut(s) 634
BspACI CCGC 6 cut(s) 5, 67, 85, 436, 646, 821
BspANI GGCC 4 cut(s) 198, 254, 327, 525
BspFNI CGCG 2 cut(s) 26, 69
BspLI GGNNCC 4 cut(s) 9, 62, 172, 478
BspPI GGATC 1 cut(s) 629
BsrI ACTGG 2 cut(s) 160, 172
BssECI CCNNGG 1 cut(s) 527
BssMI GATC 1 cut(s) 634
BssT1I CCWWGG 1 cut(s) 527
Bst4CI ACNGT 2 cut(s) 471, 720
BstAPI GCANNNNNTGC 1 cut(s) 794
BstC8I GCNNGC 1 cut(s) 294
BstEII GGTNACC 1 cut(s) 316
BstENI CCTNNNNNAGG 1 cut(s) 378
BstF5I GGATG 5 cut(s) 259, 499, 637, 679, 685
BstFNI CGCG 2 cut(s) 26, 69
BstHHI GCGC 3 cut(s) 28, 71, 95
BstKTI GATC 1 cut(s) 637
BstMAI GTCTC 2 cut(s) 687, 758
BstMBI GATC 1 cut(s) 634
BstMWI GCNNNNNNNGC 3 cut(s) 522, 794, 815
BstPAI GACNNNNGTC 1 cut(s) 776
BstPI GGTNACC 1 cut(s) 316
BstSCI CCNGG 1 cut(s) 346
BstSLI GKGCMC 1 cut(s) 412
BstUI CGCG 2 cut(s) 26, 69
BstV1I GCAGC 4 cut(s) 215, 713, 805, 827
BstV2I GAAGAC 1 cut(s) 158
BstXI CCANNNNNNTGG 1 cut(s) 296
BsuRI GGCC 4 cut(s) 198, 254, 327, 525
BtsCI GGATG 5 cut(s) 259, 499, 637, 679, 685
BtsI GCAGTG 1 cut(s) 816
BtsIMutI CAGTG 2 cut(s) 467, 816
Cac8I GCNNGC 1 cut(s) 294
CaiI CAGNNNCTG 1 cut(s) 34
CfoI GCGC 3 cut(s) 28, 71, 95
Cfr13I GGNCC 5 cut(s) 61, 196, 326, 510, 524
CseI GACGC 1 cut(s) 32
Csp6I GTAC 1 cut(s) 31
CviAII CATG 4 cut(s) 103, 188, 200, 439
CviQI GTAC 1 cut(s) 31
DpnI GATC 1 cut(s) 636
DpnII GATC 1 cut(s) 634
DraIII CACNNNGTG 1 cut(s) 794
EciI GGCGGA 2 cut(s) 20, 635
Eco130I CCWWGG 1 cut(s) 527
Eco24I GRGCYC 1 cut(s) 481
Eco47I GGWCC 2 cut(s) 61, 510
Eco57I CTGAAG 2 cut(s) 396, 566
Eco91I GGTNACC 1 cut(s) 316
EcoNI CCTNNNNNAGG 1 cut(s) 378
EcoO109I RGGNCCY 2 cut(s) 61, 326
EcoO65I GGTNACC 1 cut(s) 316
EcoT14I CCWWGG 1 cut(s) 527
EcoT22I ATGCAT 1 cut(s) 685
EcoT38I GRGCYC 1 cut(s) 481
ErhI CCWWGG 1 cut(s) 527
FaeI CATG 4 cut(s) 106, 191, 203, 442
FalI AAGNNNNNCTT 4 cut(s) 372, 404, 413, 445
FaqI GGGAC 1 cut(s) 74
FatI CATG 4 cut(s) 102, 187, 199, 438
FauNDI CATATG 1 cut(s) 274
FblI GTMKAC 1 cut(s) 21
Fnu4HI GCNGC 4 cut(s) 204, 702, 816, 819
FokI GGATG 5 cut(s) 246, 486, 644, 686, 692
FriOI GRGCYC 1 cut(s) 481
Fsp4HI GCNGC 4 cut(s) 204, 702, 816, 819
FspBI CTAG 3 cut(s) 728, 750, 774
GlaI GCGC 3 cut(s) 27, 70, 94
GluI GCNGC 4 cut(s) 204, 702, 816, 819
GsaI CCCAGC 1 cut(s) 300
GsuI CTGGAG 2 cut(s) 177, 495
HaeIII GGCC 4 cut(s) 198, 254, 327, 525
HapII CCGG 3 cut(s) 321, 348, 513
HgaI GACGC 1 cut(s) 32
HhaI GCGC 3 cut(s) 28, 71, 95
Hin1II CATG 4 cut(s) 106, 191, 203, 442
Hin6I GCGC 3 cut(s) 26, 69, 93
HinP1I GCGC 3 cut(s) 26, 69, 93
HinfI GANTC 5 cut(s) 359, 368, 587, 829, 861
HpaII CCGG 3 cut(s) 321, 348, 513
HphI GGTGA 2 cut(s) 310, 838
Hpy166II GTNNAC 2 cut(s) 22, 410
Hpy188I TCNGA 6 cut(s) 264, 451, 546, 592, 692, 724
Hpy188III TCNNGA 7 cut(s) 46, 59, 178, 374, 392, 474, 503
Hpy8I GTNNAC 2 cut(s) 22, 410
Hpy99I CGWCG 1 cut(s) 60
HpyAV CCTTC 6 cut(s) 43, 244, 349, 374, 378, 415
HpyCH4III ACNGT 2 cut(s) 471, 720
HpyCH4IV ACGT 1 cut(s) 654
HpyCH4V TGCA 7 cut(s) 203, 308, 410, 668, 683, 701, 809
HpyF10VI GCNNNNNNNGC 3 cut(s) 522, 794, 815
HpySE526I ACGT 1 cut(s) 654
Hsp92II CATG 4 cut(s) 106, 191, 203, 442
HspAI GCGC 3 cut(s) 26, 69, 93
Kzo9I GATC 1 cut(s) 634
LmnI GCTCC 4 cut(s) 100, 176, 476, 571
Lsp1109I GCAGC 4 cut(s) 215, 713, 805, 827
LweI GCATC 4 cut(s) 115, 385, 670, 713
MaeI CTAG 3 cut(s) 728, 750, 774
MaeII ACGT 1 cut(s) 654
MaeIII GTNAC 2 cut(s) 316, 836
MalI GATC 1 cut(s) 636
MboI GATC 1 cut(s) 634
MboII GAAGA 3 cut(s) 163, 389, 724
MhlI GDGCHC 3 cut(s) 412, 481, 499
MluCI AATT 3 cut(s) 222, 232, 556
MlyI GAGTC 1 cut(s) 870
MmeI TCCRAC 1 cut(s) 105
MnlI CCTC 9 cut(s) 74, 152, 235, 307, 317, 552, 586, 670, 753
Mph1103I ATGCAT 1 cut(s) 685
MseI TTAA 1 cut(s) 231
MspA1I CMGCKG 1 cut(s) 818
MspI CCGG 3 cut(s) 321, 348, 513
MspR9I CCNGG 1 cut(s) 348
MvnI CGCG 2 cut(s) 26, 69
MwoI GCNNNNNNNGC 3 cut(s) 522, 794, 815
NciI CCSGG 1 cut(s) 348
NdeI CATATG 1 cut(s) 274
NdeII GATC 1 cut(s) 634
NlaIII CATG 4 cut(s) 106, 191, 203, 442
NlaIV GGNNCC 4 cut(s) 9, 62, 172, 478
NmuCI GTSAC 1 cut(s) 316
NsiI ATGCAT 1 cut(s) 685
PfeI GAWTC 4 cut(s) 359, 368, 587, 829
PflFI GACNNNGTC 1 cut(s) 461
PflMI CCANNNNNTGG 1 cut(s) 487
PkrI GCNGC 4 cut(s) 205, 703, 817, 820
PleI GAGTC 1 cut(s) 869
PpsI GAGTC 1 cut(s) 869
PpuMI RGGWCCY 1 cut(s) 61
PshAI GACNNNNGTC 1 cut(s) 776
Psp5II RGGWCCY 1 cut(s) 61
PspEI GGTNACC 1 cut(s) 316
PspFI CCCAGC 1 cut(s) 296
PspN4I GGNNCC 4 cut(s) 9, 62, 172, 478
PspPI GGNCC 5 cut(s) 61, 196, 326, 510, 524
PspPPI RGGWCCY 1 cut(s) 61
PstNI CAGNNNCTG 1 cut(s) 34
PsyI GACNNNGTC 1 cut(s) 461
PvuII CAGCTG 1 cut(s) 818
RsaI GTAC 1 cut(s) 32
RsaNI GTAC 1 cut(s) 31
SaqAI TTAA 1 cut(s) 231
SatI GCNGC 4 cut(s) 204, 702, 816, 819
Sau3AI GATC 1 cut(s) 634
Sau96I GGNCC 5 cut(s) 61, 196, 326, 510, 524
SchI GAGTC 1 cut(s) 870
ScrFI CCNGG 1 cut(s) 348
SduI GDGCHC 3 cut(s) 412, 481, 499
SfaNI GCATC 4 cut(s) 115, 385, 670, 713
SinI GGWCC 2 cut(s) 61, 510
SmlI CTYRAG 1 cut(s) 755
SmoI CTYRAG 1 cut(s) 755
SpeI ACTAGT 1 cut(s) 773
Sse9I AATT 3 cut(s) 222, 232, 556
SsiI CCGC 6 cut(s) 5, 67, 85, 436, 646, 821
SspMI CTAG 3 cut(s) 728, 750, 774
StyD4I CCNGG 1 cut(s) 346
StyI CCWWGG 1 cut(s) 527
TaaI ACNGT 2 cut(s) 471, 720
TaiI ACGT 1 cut(s) 657
TaqI TCGA 1 cut(s) 45
TasI AATT 3 cut(s) 222, 232, 556
TfiI GAWTC 4 cut(s) 359, 368, 587, 829
Tru1I TTAA 1 cut(s) 231
Tru9I TTAA 1 cut(s) 231
TscAI CASTG 2 cut(s) 474, 816
TseFI GTSAC 1 cut(s) 316
TseI GCWGC 4 cut(s) 203, 701, 815, 818
Tsp45I GTSAC 1 cut(s) 316
TspDTI ATGAA 3 cut(s) 351, 549, 842
TspRI CASTG 2 cut(s) 474, 816
Tth111I GACNNNGTC 1 cut(s) 461
Van91I CCANNNNNTGG 1 cut(s) 487
VneI GTGCAC 1 cut(s) 408
VpaK11BI GGWCC 2 cut(s) 61, 510
XagI CCTNNNNNAGG 1 cut(s) 378
XmiI GTMKAC 1 cut(s) 21
XspI CTAG 3 cut(s) 728, 750, 774
Zsp2I ATGCAT 1 cut(s) 685
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.