Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003986

Physical Location & Seq

Genomic Coordinates Reverse (-)

6091841 .. 6092741

Gene Structure 901 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0076700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGAGGGCTACTAAGAGTGTTAGGGTGTGGCAGCCTCCACAGGTTGGTTGGTTGAAGGTCAATACAGAAGCTGCTTTTTCAGGTGGTGCAGGGAGTTGGGAAGTAGTGGTGTGTGATAGCATTGGTTTGGTTGTTGGAGGAGCATGTGGTCGGTGTGCTTTTGCGCGATCTGCAGTTGTGATGGAGGCATTGGCAGTGAGGGCAGCTTGCAGTTTGGTGGAGAAGTTTCACTTCACCCCTGTTACTATTGAGTCTAATTGCTTGACTGTTGTGCTTGGGGTCCAGGTAAATGGAAATGAGGACATCTCTGAATTGGGAAGATTGGTAGAGGATATTAGAGTTTTATTGTCTTATTTTCCTTCTTCTACATTGTCTTATGTTGGTAGAGATGCTAATGTAGCAGCTCATAACTTAGCAAAAGCTGCTTTAGTTTCAGATTTTCATTTTGTTTGGGAAGGTTCCATTCCCCCAGCTTTGAGTAACGTTGTTACTCAAACAAAATGGGCTGCAAGTCTTTCTTCGGATGTGATGTTTTTGATTCTCGATAAGTTCGTTTTGCTGCCGTCTGCAAGGGATGGAGATCTCTTGCAAAAGTCTACTATAAACATTAGTCACAGCTATCTCATAAATAAAGTAGTTCCCATTGTTAAGAGTATAGGGTCAAAGTCACGGTCAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004130 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0005778 GO:0005911 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009636 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0016020 GO:0016209 GO:0016491 GO:0016684 GO:0016688 GO:0016999 GO:0017001 GO:0017144 GO:0030054 GO:0031090 GO:0031903 GO:0031967 GO:0031975 GO:0033554 GO:0034599 GO:0042221 GO:0042579 GO:0042737 GO:0042743 GO:0042744 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051186 GO:0051187 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0072593 GO:0097237 GO:0098588 GO:0098754 GO:0098805 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko00480 map00053 map00480

Pfam Domains

Protein Families

peroxidase

Protein Analysis

226

Amino Acids

24.22

Weight (kDa)

8.29

Isoelectric Point (pI)

37.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	27 - 142	2.1e-13	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35000
fragaria_vesca	FvH4_1g11491 FvH4_2g01310
malus_domestica	MD05G1120800.v1.1 MD15G1242900.v1.1
prunus_persica	Prupe.7G171200_v2.0.a1 Prupe.8G164400_v2.0.a1 Prupe.8G164400_v2.0.a1
pyrus_communis	pycom05g11470 pycom10g10600
rosa_chinensis	RchiOBHm_Chr2g0099101 RchiOBHm_Chr6g0252051 RchiOBHm_Chr6g0252201
rosa_laevigata	RLG00000015403 RLG00000016848
rosa_multiflora	Rmu_ssc0000165.1_g000002
rosa_roxburghii	Rroxscaffold_2G00143440 Rroxscaffold_7G00216250
rosa_rugosa	Rorug02G0076700 Rorug05G0506000.1
rosa_samantha	Rh2AG125800 Rh2BG129100 Rh2CG130100 Rh2DG130500 Rh6AG019900 Rh6BG015300 Rh6CG011600 Rh6CG012300 Rh6DG013000 Rh6DG013600
rosa_wichuraiana	Rw2G009690 Rw6G000090 Rw6G001630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	44
AccI	GTMKAC	1 cut(s)	596
AccII	CGCG	1 cut(s)	166
AclI	AACGTT	1 cut(s)	483
AfiI	CCNNNNNNNGG	1 cut(s)	44
AgsI	TTSAA	1 cut(s)	55
AjnI	CCWGG	1 cut(s)	282
AluBI	AGCT	6 cut(s)	71, 206, 404, 422, 473, 618
AluI	AGCT	6 cut(s)	71, 206, 404, 422, 473, 618
AlwNI	CAGNNNCTG	1 cut(s)	71
ApeKI	GCWGC	7 cut(s)	31, 71, 203, 401, 422, 506, 559
ArsI	GACNNNNNNTTYG	1 cut(s)	656
AspLEI	GCGC	1 cut(s)	166
AspS9I	GGNCC	1 cut(s)	280
AsuHPI	GGTGA	1 cut(s)	226
AvaII	GGWCC	1 cut(s)	280
BbvI	GCAGC	7 cut(s)	43, 58, 215, 409, 413, 493, 546
BccI	CCATC	2 cut(s)	175, 569
BceAI	ACGGC	1 cut(s)	547
BciT130I	CCWGG	1 cut(s)	284
BfmI	CTRYAG	1 cut(s)	171
BglII	AGATCT	1 cut(s)	580
BisI	GCNGC	7 cut(s)	32, 72, 204, 402, 423, 507, 560
BlsI	GCNGC	7 cut(s)	33, 73, 205, 403, 424, 508, 561
Bme1390I	CCNGG	1 cut(s)	284
Bme18I	GGWCC	1 cut(s)	280
BmgT120I	GGNCC	1 cut(s)	280
BmiI	GGNNCC	2 cut(s)	281, 460
BmrFI	CCNGG	1 cut(s)	284
BmsI	GCATC	1 cut(s)	379
BplI	GAGNNNNNCTC	2 cut(s)	290, 322
BsaBI	GATNNNNATC	1 cut(s)	579
Bsc4I	CCNNNNNNNGG	1 cut(s)	44
Bse8I	GATNNNNATC	1 cut(s)	579
BseBI	CCWGG	1 cut(s)	284
BseGI	GGATG	2 cut(s)	529, 580
BseJI	GATNNNNATC	1 cut(s)	579
BseLI	CCNNNNNNNGG	1 cut(s)	44
BseRI	GAGGAG	1 cut(s)	153
BseXI	GCAGC	7 cut(s)	43, 58, 215, 409, 413, 493, 546
BseYI	CCCAGC	1 cut(s)	469
BsgI	GTGCAG	1 cut(s)	108
Bsh1236I	CGCG	1 cut(s)	166
BslI	CCNNNNNNNGG	1 cut(s)	44
Bsp143I	GATC	2 cut(s)	167, 580
BspFNI	CGCG	1 cut(s)	166
BspLI	GGNNCC	2 cut(s)	281, 460
BspMAI	CTGCAG	1 cut(s)	175
BssMI	GATC	2 cut(s)	167, 580
Bst2UI	CCWGG	1 cut(s)	284
Bst4CI	ACNGT	2 cut(s)	268, 672
BstAPI	GCANNNNNTGC	1 cut(s)	422
BstC8I	GCNNGC	1 cut(s)	208
BstDEI	CTNAG	2 cut(s)	12, 412
BstF5I	GGATG	2 cut(s)	529, 580
BstFNI	CGCG	1 cut(s)	166
BstHHI	GCGC	1 cut(s)	166
BstKTI	GATC	2 cut(s)	170, 583
BstMBI	GATC	2 cut(s)	167, 580
BstMWI	GCNNNNNNNGC	4 cut(s)	170, 200, 398, 422
BstNI	CCWGG	1 cut(s)	284
BstNSI	RCATGY	1 cut(s)	147
BstSCI	CCNGG	1 cut(s)	282
BstSFI	CTRYAG	1 cut(s)	171
BstUI	CGCG	1 cut(s)	166
BstV1I	GCAGC	7 cut(s)	43, 58, 215, 409, 413, 493, 546
BstX2I	RGATCY	1 cut(s)	580
BstXI	CCANNNNNNTGG	1 cut(s)	290
BstYI	RGATCY	1 cut(s)	580
BtsCI	GGATG	2 cut(s)	529, 580
BtsI	GCAGTG	1 cut(s)	201
BtsIMutI	CAGTG	1 cut(s)	201
Cac8I	GCNNGC	1 cut(s)	208
CaiI	CAGNNNCTG	1 cut(s)	71
CfoI	GCGC	1 cut(s)	166
Cfr13I	GGNCC	1 cut(s)	280
CviAII	CATG	1 cut(s)	144
CviJI	RGCY	9 cut(s)	8, 34, 71, 206, 404, 422, 473, 506, 618
CviKI_1	RGCY	9 cut(s)	8, 34, 71, 206, 404, 422, 473, 506, 618
DdeI	CTNAG	2 cut(s)	12, 412
DpnI	GATC	2 cut(s)	169, 582
DpnII	GATC	2 cut(s)	167, 580
Eco47I	GGWCC	1 cut(s)	280
EcoRII	CCWGG	1 cut(s)	282
FaeI	CATG	1 cut(s)	147
FaiI	YATR	7 cut(s)	145, 378, 408, 602, 626, 656, 679
FalI	AAGNNNNNCTT	4 cut(s)	215, 247, 502, 534
FatI	CATG	1 cut(s)	143
FblI	GTMKAC	1 cut(s)	596
Fnu4HI	GCNGC	7 cut(s)	32, 72, 204, 402, 423, 507, 560
FokI	GGATG	2 cut(s)	536, 587
Fsp4HI	GCNGC	7 cut(s)	32, 72, 204, 402, 423, 507, 560
GlaI	GCGC	1 cut(s)	165
GluI	GCNGC	7 cut(s)	32, 72, 204, 402, 423, 507, 560
GsaI	CCCAGC	1 cut(s)	473
HhaI	GCGC	1 cut(s)	166
Hin1II	CATG	1 cut(s)	147
Hin6I	GCGC	1 cut(s)	164
HinP1I	GCGC	1 cut(s)	164
HinfI	GANTC	2 cut(s)	251, 538
HphI	GGTGA	1 cut(s)	226
Hpy166II	GTNNAC	1 cut(s)	597
Hpy188I	TCNGA	3 cut(s)	310, 436, 523
Hpy188III	TCNNGA	1 cut(s)	542
Hpy8I	GTNNAC	1 cut(s)	597
HpyAV	CCTTC	3 cut(s)	49, 369, 449
HpyCH4III	ACNGT	2 cut(s)	268, 672
HpyCH4IV	ACGT	1 cut(s)	483
HpyCH4V	TGCA	6 cut(s)	89, 173, 210, 509, 569, 589
HpyF10VI	GCNNNNNNNGC	4 cut(s)	170, 200, 398, 422
HpyF3I	CTNAG	2 cut(s)	12, 412
HpySE526I	ACGT	1 cut(s)	483
Hsp92II	CATG	1 cut(s)	147
HspAI	GCGC	1 cut(s)	164
Kzo9I	GATC	2 cut(s)	167, 580
LmnI	GCTCC	1 cut(s)	140
LpnPI	CCDG	7 cut(s)	26, 66, 75, 252, 269, 296, 483
Lsp1109I	GCAGC	7 cut(s)	43, 58, 215, 409, 413, 493, 546
LweI	GCATC	1 cut(s)	379
MaeII	ACGT	1 cut(s)	483
MaeIII	GTNAC	5 cut(s)	241, 479, 487, 611, 666
MalI	GATC	2 cut(s)	169, 582
MboI	GATC	2 cut(s)	167, 580
MboII	GAAGA	3 cut(s)	330, 354, 510
MflI	RGATCY	1 cut(s)	580
MluCI	AATT	2 cut(s)	256, 311
MlyI	GAGTC	1 cut(s)	260
MmeI	TCCRAC	1 cut(s)	115
MnlI	CCTC	6 cut(s)	45, 131, 178, 192, 292, 322
MseI	TTAA	1 cut(s)	648
MspR9I	CCNGG	1 cut(s)	284
MvaI	CCWGG	1 cut(s)	284
MvnI	CGCG	1 cut(s)	166
MwoI	GCNNNNNNNGC	4 cut(s)	170, 200, 398, 422
NdeII	GATC	2 cut(s)	167, 580
NlaIII	CATG	1 cut(s)	147
NlaIV	GGNNCC	2 cut(s)	281, 460
NmuCI	GTSAC	2 cut(s)	611, 666
NspI	RCATGY	1 cut(s)	147
PcsI	WCGNNNNNNNCGW	1 cut(s)	549
PfeI	GAWTC	1 cut(s)	538
PflMI	CCANNNNNTGG	1 cut(s)	44
PkrI	GCNGC	7 cut(s)	33, 73, 205, 403, 424, 508, 561
PleI	GAGTC	1 cut(s)	259
PpsI	GAGTC	1 cut(s)	259
Psp1406I	AACGTT	1 cut(s)	483
Psp6I	CCWGG	1 cut(s)	282
PspFI	CCCAGC	1 cut(s)	469
PspGI	CCWGG	1 cut(s)	282
PspN4I	GGNNCC	2 cut(s)	281, 460
PspPI	GGNCC	1 cut(s)	280
PstI	CTGCAG	1 cut(s)	175
PstNI	CAGNNNCTG	1 cut(s)	71
PsuI	RGATCY	1 cut(s)	580
SaqAI	TTAA	1 cut(s)	648
SatI	GCNGC	7 cut(s)	32, 72, 204, 402, 423, 507, 560
Sau3AI	GATC	2 cut(s)	167, 580
Sau96I	GGNCC	1 cut(s)	280
SchI	GAGTC	1 cut(s)	260
ScrFI	CCNGG	1 cut(s)	284
SfaNI	GCATC	1 cut(s)	379
SfcI	CTRYAG	1 cut(s)	171
SinI	GGWCC	1 cut(s)	280
Sse9I	AATT	2 cut(s)	256, 311
StyD4I	CCNGG	1 cut(s)	282
TaaI	ACNGT	2 cut(s)	268, 672
TaiI	ACGT	1 cut(s)	486
TaqI	TCGA	1 cut(s)	543
TasI	AATT	2 cut(s)	256, 311
TfiI	GAWTC	1 cut(s)	538
Tru1I	TTAA	1 cut(s)	648
Tru9I	TTAA	1 cut(s)	648
TscAI	CASTG	1 cut(s)	201
TseFI	GTSAC	2 cut(s)	611, 666
TseI	GCWGC	7 cut(s)	31, 71, 203, 401, 422, 506, 559
Tsp45I	GTSAC	2 cut(s)	611, 666
TspDTI	ATGAA	1 cut(s)	431
TspRI	CASTG	1 cut(s)	201
Van91I	CCANNNNNTGG	1 cut(s)	44
VpaK11BI	GGWCC	1 cut(s)	280
XceI	RCATGY	1 cut(s)	147
XcmI	CCANNNNNNNNNTGG	1 cut(s)	45
XmiI	GTMKAC	1 cut(s)	596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.