Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0003986

Physical Location & Seq

Genomic Coordinates Forward (+)

19970464 .. 19973013

Gene Structure 2550 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1242900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGCGGGAGGAGTGGTGGTAGACGCGCAGTACCTCAAGGAAGTCGAGAAGGCTCGCCGCGACCTTCGCGCGCTCATCGCCTACAGGAACTGCGCTCCGATCATGCTTCGTTTGGCGTGGCATGATGCTGGAACATACAACGCCGAAACGAAAACAGGAGGAGCTAATGGCTCGATCAGGAACGAGCATGAGTTAGGCCACGGTGCGAATAGCGGTCTGAAAATTGCTGTTAATTTCTGCGAGGAAGTGAAAGCCAAATATTCAAAAATCACGTATGCGGACCTTTACCAGCTTGCTGGGGTTGTCGCTGTCGAGGTCACTGGAGGCCCTACTATTGAGTTTGTTCCTGGCAGAAAGGATTCATTGGAGTCTCCTGAAGAAGGGCGGCTTCCAGATGCCAAAAAAGGTGCATCGCACTTGAAGGACATCTTTTACCGCATGGGTCTGTCTGATAAGGACATTGTGGCACTGTCTGGAGCTCATACACTGGGTAGAGCACATCCAGAAAGGTCAGGCTTTGAAGGCCCTTGGACTAGTGAGCCTTTGAAGTTCGATAATTCATACTTTACTGAACTACTGAAAGGGGAATCAGAGGGGCTGTTGAAACTTCCCACAGACAAGGCTTTGCTGGACGATCCTGAGTTCCGCCGCTATGTTGAACTTTATGCAAAGGATGAGGATGCATTTTTCAAAGACTACGCAGCGTCACACAAGAAACTATCAGAGCTAGGATTCACTCCATCTTCTTGTGTGAAGGAAGCTGCAAAGACCAGTACCATATTGGCACAAAGCGCAGTGGGAGTTGCTGTTACTGCGGCGGTGGTGATCCTGAGTTACTTATACGAAGTTCGTAAAAATGCCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004130 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0005778 GO:0005911 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009636 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0016020 GO:0016209 GO:0016491 GO:0016684 GO:0016688 GO:0016999 GO:0017001 GO:0017144 GO:0030054 GO:0031090 GO:0031903 GO:0031967 GO:0031975 GO:0033554 GO:0034599 GO:0042221 GO:0042579 GO:0042737 GO:0042743 GO:0042744 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051186 GO:0051187 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0072593 GO:0097237 GO:0098588 GO:0098754 GO:0098805 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko00480 map00053 map00480

Pfam Domains

Protein Families

peroxidase

Protein Analysis

289

Amino Acids

31.47

Weight (kDa)

6.41

Isoelectric Point (pI)

31.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	20 - 225	1.5e-49	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35000
fragaria_vesca	FvH4_1g11491 FvH4_2g01310
malus_domestica	MD05G1120800.v1.1 MD15G1242900.v1.1
prunus_persica	Prupe.7G171200_v2.0.a1 Prupe.8G164400_v2.0.a1 Prupe.8G164400_v2.0.a1
pyrus_communis	pycom05g11470 pycom10g10600
rosa_chinensis	RchiOBHm_Chr2g0099101 RchiOBHm_Chr6g0252051 RchiOBHm_Chr6g0252201
rosa_laevigata	RLG00000015403 RLG00000016848
rosa_multiflora	Rmu_ssc0000165.1_g000002
rosa_roxburghii	Rroxscaffold_2G00143440 Rroxscaffold_7G00216250
rosa_rugosa	Rorug02G0076700 Rorug05G0506000.1
rosa_samantha	Rh2AG125800 Rh2BG129100 Rh2CG130100 Rh2DG130500 Rh6AG019900 Rh6BG015300 Rh6CG011600 Rh6CG012300 Rh6DG013000 Rh6DG013600
rosa_wichuraiana	Rw2G009690 Rw6G000090 Rw6G001630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	21
AccII	CGCG	4 cut(s)	26, 60, 69, 71
AclWI	GGATC	2 cut(s)	629, 820
AcuI	CTGAAG	1 cut(s)	396
AfaI	GTAC	2 cut(s)	32, 775
AfiI	CCNNNNNNNGG	1 cut(s)	380
AgsI	TTSAA	7 cut(s)	264, 421, 521, 547, 604, 659, 691
AhlI	ACTAGT	1 cut(s)	533
AjnI	CCWGG	1 cut(s)	346
AluBI	AGCT	5 cut(s)	164, 292, 479, 727, 761
AluI	AGCT	5 cut(s)	164, 292, 479, 727, 761
Alw21I	GWGCWC	2 cut(s)	481, 499
Alw26I	GTCTC	1 cut(s)	375
AlwI	GGATC	2 cut(s)	629, 820
AlwNI	CAGNNNCTG	1 cut(s)	90
AoxI	GGCC	3 cut(s)	196, 325, 523
ApeKI	GCWGC	2 cut(s)	701, 761
Asp700I	GAANNNNTTC	1 cut(s)	358
AspLEI	GCGC	5 cut(s)	28, 71, 73, 95, 794
AspS9I	GGNCC	3 cut(s)	280, 326, 524
AsuHPI	GGTGA	1 cut(s)	835
AvaII	GGWCC	1 cut(s)	280
BanII	GRGCYC	1 cut(s)	481
Bbv12I	GWGCWC	2 cut(s)	481, 499
BbvI	GCAGC	2 cut(s)	713, 748
BccI	CCATC	1 cut(s)	748
BciT130I	CCWGG	1 cut(s)	348
BcoDI	GTCTC	1 cut(s)	375
BcuI	ACTAGT	1 cut(s)	533
BfaI	CTAG	2 cut(s)	534, 728
BfmI	CTRYAG	1 cut(s)	82
BisI	GCNGC	6 cut(s)	58, 386, 649, 702, 762, 816
BlsI	GCNGC	6 cut(s)	59, 387, 650, 703, 763, 817
Bme1390I	CCNGG	1 cut(s)	348
Bme18I	GGWCC	1 cut(s)	280
BmgT120I	GGNCC	3 cut(s)	280, 326, 524
BmrFI	CCNGG	1 cut(s)	348
BmrI	ACTGGG	1 cut(s)	497
BmsI	GCATC	4 cut(s)	115, 385, 419, 670
BmuI	ACTGGG	1 cut(s)	497
BpmI	CTGGAG	2 cut(s)	342, 495
BpuEI	CTTGAG	1 cut(s)	20
BsaAI	YACGTR	1 cut(s)	273
BsaJI	CCNNGG	2 cut(s)	199, 527
BsaXI	ACNNNNNCTCC	4 cut(s)	30, 33, 792, 822
Bsc4I	CCNNNNNNNGG	1 cut(s)	380
Bse1I	ACTGG	3 cut(s)	325, 492, 771
BseBI	CCWGG	1 cut(s)	348
BseDI	CCNNGG	2 cut(s)	199, 527
BseGI	GGATG	3 cut(s)	499, 679, 685
BseLI	CCNNNNNNNGG	1 cut(s)	380
BseMII	CTCAG	2 cut(s)	630, 821
BseNI	ACTGG	3 cut(s)	325, 492, 771
BsePI	GCGCGC	1 cut(s)	69
BseRI	GAGGAG	2 cut(s)	24, 174
BseXI	GCAGC	2 cut(s)	713, 748
BseYI	CCCAGC	1 cut(s)	296
Bsh1236I	CGCG	4 cut(s)	26, 60, 69, 71
BshFI	GGCC	3 cut(s)	198, 327, 525
BsiHKAI	GWGCWC	2 cut(s)	481, 499
BslI	CCNNNNNNNGG	1 cut(s)	380
BsmAI	GTCTC	1 cut(s)	375
BsnI	GGCC	3 cut(s)	198, 327, 525
Bsp1286I	GDGCHC	2 cut(s)	481, 499
Bsp143I	GATC	4 cut(s)	99, 174, 634, 825
BspANI	GGCC	3 cut(s)	198, 327, 525
BspCNI	CTCAG	2 cut(s)	631, 822
BspFNI	CGCG	4 cut(s)	26, 60, 69, 71
BspPI	GGATC	2 cut(s)	629, 820
BsrI	ACTGG	3 cut(s)	325, 492, 771
BssECI	CCNNGG	2 cut(s)	199, 527
BssHII	GCGCGC	1 cut(s)	69
BssMI	GATC	4 cut(s)	99, 174, 634, 825
BssT1I	CCWWGG	1 cut(s)	527
Bst2UI	CCWGG	1 cut(s)	348
Bst4CI	ACNGT	2 cut(s)	203, 471
BstBAI	YACGTR	1 cut(s)	273
BstC8I	GCNNGC	3 cut(s)	55, 71, 294
BstDEI	CTNAG	2 cut(s)	639, 830
BstDSI	CCRYGG	1 cut(s)	199
BstENI	CCTNNNNNAGG	1 cut(s)	378
BstF5I	GGATG	3 cut(s)	499, 679, 685
BstFNI	CGCG	4 cut(s)	26, 60, 69, 71
BstHHI	GCGC	5 cut(s)	28, 71, 73, 95, 794
BstKTI	GATC	4 cut(s)	102, 177, 637, 828
BstMAI	GTCTC	1 cut(s)	375
BstMBI	GATC	4 cut(s)	99, 174, 634, 825
BstMWI	GCNNNNNNNGC	5 cut(s)	66, 77, 522, 791, 812
BstNI	CCWGG	1 cut(s)	348
BstSCI	CCNGG	1 cut(s)	346
BstSFI	CTRYAG	1 cut(s)	82
BstUI	CGCG	4 cut(s)	26, 60, 69, 71
BstV1I	GCAGC	2 cut(s)	713, 748
BstXI	CCANNNNNNTGG	1 cut(s)	296
BsuRI	GGCC	3 cut(s)	198, 327, 525
BtgI	CCRYGG	1 cut(s)	199
BtgZI	GCGATG	2 cut(s)	61, 396
BtsCI	GGATG	3 cut(s)	499, 679, 685
BtsI	GCAGTG	1 cut(s)	801
BtsIMutI	CAGTG	4 cut(s)	318, 467, 485, 801
Cac8I	GCNNGC	3 cut(s)	55, 71, 294
CaiI	CAGNNNCTG	1 cut(s)	90
CfoI	GCGC	5 cut(s)	28, 71, 73, 95, 794
Cfr13I	GGNCC	3 cut(s)	280, 326, 524
CseI	GACGC	2 cut(s)	32, 693
Csp6I	GTAC	2 cut(s)	31, 774
CviAII	CATG	4 cut(s)	103, 122, 188, 439
CviQI	GTAC	2 cut(s)	31, 774
DdeI	CTNAG	2 cut(s)	639, 830
DpnI	GATC	4 cut(s)	101, 176, 636, 827
DpnII	GATC	4 cut(s)	99, 174, 634, 825
EciI	GGCGGA	1 cut(s)	635
Ecl136II	GAGCTC	1 cut(s)	479
Eco130I	CCWWGG	1 cut(s)	527
Eco24I	GRGCYC	1 cut(s)	481
Eco47I	GGWCC	1 cut(s)	280
Eco53kI	GAGCTC	1 cut(s)	479
Eco57I	CTGAAG	1 cut(s)	396
EcoICRI	GAGCTC	1 cut(s)	479
EcoNI	CCTNNNNNAGG	1 cut(s)	378
EcoO109I	RGGNCCY	2 cut(s)	326, 524
EcoRII	CCWGG	1 cut(s)	346
EcoT14I	CCWWGG	1 cut(s)	527
EcoT22I	ATGCAT	1 cut(s)	685
EcoT38I	GRGCYC	1 cut(s)	481
ErhI	CCWWGG	1 cut(s)	527
FaeI	CATG	4 cut(s)	106, 125, 191, 442
FalI	AAGNNNNNCTT	4 cut(s)	372, 404, 413, 445
FatI	CATG	4 cut(s)	102, 121, 187, 438
FblI	GTMKAC	1 cut(s)	21
Fnu4HI	GCNGC	6 cut(s)	58, 386, 649, 702, 762, 816
FokI	GGATG	3 cut(s)	486, 686, 692
FriOI	GRGCYC	1 cut(s)	481
Fsp4HI	GCNGC	6 cut(s)	58, 386, 649, 702, 762, 816
FspBI	CTAG	2 cut(s)	534, 728
GlaI	GCGC	5 cut(s)	27, 70, 72, 94, 793
GluI	GCNGC	6 cut(s)	58, 386, 649, 702, 762, 816
GsaI	CCCAGC	1 cut(s)	300
GsuI	CTGGAG	2 cut(s)	342, 495
HaeIII	GGCC	3 cut(s)	198, 327, 525
HgaI	GACGC	2 cut(s)	32, 693
HhaI	GCGC	5 cut(s)	28, 71, 73, 95, 794
Hin1II	CATG	4 cut(s)	106, 125, 191, 442
Hin6I	GCGC	5 cut(s)	26, 69, 71, 93, 792
HinP1I	GCGC	5 cut(s)	26, 69, 71, 93, 792
HinfI	GANTC	4 cut(s)	359, 368, 587, 732
HphI	GGTGA	1 cut(s)	835
Hpy166II	GTNNAC	1 cut(s)	22
Hpy188I	TCNGA	5 cut(s)	99, 219, 451, 592, 724
Hpy188III	TCNNGA	8 cut(s)	46, 178, 374, 392, 474, 503, 638, 829
Hpy8I	GTNNAC	1 cut(s)	22
HpyAV	CCTTC	6 cut(s)	43, 74, 374, 415, 515, 748
HpyCH4III	ACNGT	2 cut(s)	203, 471
HpyCH4IV	ACGT	1 cut(s)	272
HpyCH4V	TGCA	4 cut(s)	410, 668, 683, 764
HpyF10VI	GCNNNNNNNGC	5 cut(s)	66, 77, 522, 791, 812
HpyF3I	CTNAG	2 cut(s)	639, 830
HpySE526I	ACGT	1 cut(s)	272
Hsp92II	CATG	4 cut(s)	106, 125, 191, 442
HspAI	GCGC	5 cut(s)	26, 69, 71, 93, 792
Kzo9I	GATC	4 cut(s)	99, 174, 634, 825
LmnI	GCTCC	3 cut(s)	100, 161, 476
Lsp1109I	GCAGC	2 cut(s)	713, 748
LweI	GCATC	4 cut(s)	115, 385, 419, 670
MaeI	CTAG	2 cut(s)	534, 728
MaeII	ACGT	1 cut(s)	272
MaeIII	GTNAC	4 cut(s)	316, 705, 808, 833
MalI	GATC	4 cut(s)	101, 176, 636, 827
MboI	GATC	4 cut(s)	99, 174, 634, 825
MboII	GAAGA	2 cut(s)	389, 735
MhlI	GDGCHC	2 cut(s)	481, 499
MluCI	AATT	3 cut(s)	222, 232, 556
MlyI	GAGTC	1 cut(s)	377
MnlI	CCTC	7 cut(s)	44, 152, 235, 307, 317, 586, 670
Mph1103I	ATGCAT	1 cut(s)	685
MroXI	GAANNNNTTC	1 cut(s)	358
MseI	TTAA	1 cut(s)	231
MspR9I	CCNGG	1 cut(s)	348
MvaI	CCWGG	1 cut(s)	348
MvnI	CGCG	4 cut(s)	26, 60, 69, 71
MwoI	GCNNNNNNNGC	5 cut(s)	66, 77, 522, 791, 812
NdeII	GATC	4 cut(s)	99, 174, 634, 825
NlaIII	CATG	4 cut(s)	106, 125, 191, 442
NmuCI	GTSAC	2 cut(s)	316, 705
NsiI	ATGCAT	1 cut(s)	685
PauI	GCGCGC	1 cut(s)	69
PdmI	GAANNNNTTC	1 cut(s)	358
PfeI	GAWTC	3 cut(s)	359, 587, 732
PkrI	GCNGC	6 cut(s)	59, 387, 650, 703, 763, 817
PleI	GAGTC	1 cut(s)	376
PpsI	GAGTC	1 cut(s)	376
Ppu21I	YACGTR	1 cut(s)	273
Psp124BI	GAGCTC	1 cut(s)	481
Psp6I	CCWGG	1 cut(s)	346
PspFI	CCCAGC	1 cut(s)	296
PspGI	CCWGG	1 cut(s)	346
PspPI	GGNCC	3 cut(s)	280, 326, 524
PstNI	CAGNNNCTG	1 cut(s)	90
PteI	GCGCGC	1 cut(s)	69
RsaI	GTAC	2 cut(s)	32, 775
RsaNI	GTAC	2 cut(s)	31, 774
SacI	GAGCTC	1 cut(s)	481
SaqAI	TTAA	1 cut(s)	231
SatI	GCNGC	6 cut(s)	58, 386, 649, 702, 762, 816
Sau3AI	GATC	4 cut(s)	99, 174, 634, 825
Sau96I	GGNCC	3 cut(s)	280, 326, 524
SchI	GAGTC	1 cut(s)	377
ScrFI	CCNGG	1 cut(s)	348
SduI	GDGCHC	2 cut(s)	481, 499
SfaNI	GCATC	4 cut(s)	115, 385, 419, 670
SfcI	CTRYAG	1 cut(s)	82
SinI	GGWCC	1 cut(s)	280
SmlI	CTYRAG	1 cut(s)	35
SmoI	CTYRAG	1 cut(s)	35
SpeI	ACTAGT	1 cut(s)	533
Sse9I	AATT	3 cut(s)	222, 232, 556
SspI	AATATT	1 cut(s)	260
SspMI	CTAG	2 cut(s)	534, 728
SstI	GAGCTC	1 cut(s)	481
StyD4I	CCNGG	1 cut(s)	346
StyI	CCWWGG	1 cut(s)	527
TaaI	ACNGT	2 cut(s)	203, 471
TaiI	ACGT	1 cut(s)	275
TaqI	TCGA	4 cut(s)	45, 173, 312, 552
TasI	AATT	3 cut(s)	222, 232, 556
TauI	GCSGC	4 cut(s)	60, 388, 651, 818
TfiI	GAWTC	3 cut(s)	359, 587, 732
Tru1I	TTAA	1 cut(s)	231
Tru9I	TTAA	1 cut(s)	231
TscAI	CASTG	4 cut(s)	325, 474, 492, 801
TseFI	GTSAC	2 cut(s)	316, 705
TseI	GCWGC	2 cut(s)	701, 761
Tsp45I	GTSAC	2 cut(s)	316, 705
TspDTI	ATGAA	2 cut(s)	351, 549
TspRI	CASTG	4 cut(s)	325, 474, 492, 801
VpaK11BI	GGWCC	1 cut(s)	280
XagI	CCTNNNNNAGG	1 cut(s)	378
XcmI	CCANNNNNNNNNTGG	1 cut(s)	778
XmiI	GTMKAC	1 cut(s)	21
XmnI	GAANNNNTTC	1 cut(s)	358
XspI	CTAG	2 cut(s)	534, 728
Zsp2I	ATGCAT	1 cut(s)	685

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.