Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000165.1

Orthogroup ID

OG0003986

Physical Location & Seq

Genomic Coordinates Reverse (-)

14750 .. 16768

Gene Structure 2019 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000165.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

atgttcaactcaatcatcctctccccacgcctcccctccagggcaccttatcttctaactttgttaatgtacttaagaatgctagatgcttgggagaagatgcctgtttgtgcaccacatctgagggacatcttctatcgaatggggttatcggacaaggatattgttgcactctctggggctcatacactgggaagggcacatccagagagatctggttttgatggtccttggactcaggaacccctaaagtttgataactcatacttcatagaattgctgaaaggggaatcagagggattgctgaaactcccatcagatacagctctgttagatgatgctgagttccgtaaatatgttgagctatatgcaaaggatgaggaggcatttttcagagattatgcagaatcacataagaaactctctgagcttgggtttactacaagttcctccaagattattgcaaaggatagcaccataatagcacaaggcgcagttggagttgcagtttgtgctgctgtcgtgatcctgggctacttatatgaagctcgcaaaagaatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004130 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0005778 GO:0005911 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009636 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0016020 GO:0016209 GO:0016491 GO:0016684 GO:0016688 GO:0016999 GO:0017001 GO:0017144 GO:0030054 GO:0031090 GO:0031903 GO:0031967 GO:0031975 GO:0033554 GO:0034599 GO:0042221 GO:0042579 GO:0042737 GO:0042743 GO:0042744 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051186 GO:0051187 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0072593 GO:0097237 GO:0098588 GO:0098754 GO:0098805 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko00480 map00053 map00480

Pfam Domains

Protein Families

peroxidase

Protein Analysis

187

Amino Acids

21.07

Weight (kDa)

6.1

Isoelectric Point (pI)

43.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35000
fragaria_vesca	FvH4_1g11491 FvH4_2g01310
malus_domestica	MD05G1120800.v1.1 MD15G1242900.v1.1
prunus_persica	Prupe.7G171200_v2.0.a1 Prupe.8G164400_v2.0.a1 Prupe.8G164400_v2.0.a1
pyrus_communis	pycom05g11470 pycom10g10600
rosa_chinensis	RchiOBHm_Chr2g0099101 RchiOBHm_Chr6g0252051 RchiOBHm_Chr6g0252201
rosa_laevigata	RLG00000015403 RLG00000016848
rosa_multiflora	Rmu_ssc0000165.1_g000002
rosa_roxburghii	Rroxscaffold_2G00143440 Rroxscaffold_7G00216250
rosa_rugosa	Rorug02G0076700 Rorug05G0506000.1
rosa_samantha	Rh2AG125800 Rh2BG129100 Rh2CG130100 Rh2DG130500 Rh6AG019900 Rh6BG015300 Rh6CG011600 Rh6CG012300 Rh6DG013000 Rh6DG013600
rosa_wichuraiana	Rw2G009690 Rw6G000090 Rw6G001630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	43
AclWI	GGATC	1 cut(s)	520
AfaI	GTAC	1 cut(s)	71
AfiI	CCNNNNNNNGG	1 cut(s)	40
AflII	CTTAAG	1 cut(s)	73
AgsI	TTSAA	1 cut(s)	7
AjnI	CCWGG	2 cut(s)	38, 528
AluBI	AGCT	4 cut(s)	326, 364, 430, 548
AluI	AGCT	4 cut(s)	326, 364, 430, 548
Alw21I	GWGCWC	1 cut(s)	115
Alw44I	GTGCAC	1 cut(s)	111
AlwI	GGATC	1 cut(s)	520
ApaLI	GTGCAC	1 cut(s)	111
ApeKI	GCWGC	1 cut(s)	515
AspLEI	GCGC	1 cut(s)	494
AspS9I	GGNCC	1 cut(s)	227
AvaII	GGWCC	1 cut(s)	227
BaeGI	GKGCMC	3 cut(s)	46, 115, 202
BanI	GGYRCC	1 cut(s)	43
BanII	GRGCYC	1 cut(s)	184
Bbv12I	GWGCWC	1 cut(s)	115
BbvI	GCAGC	1 cut(s)	502
BccI	CCATC	2 cut(s)	218, 322
BciT130I	CCWGG	2 cut(s)	40, 530
BfaI	CTAG	1 cut(s)	83
BfrI	CTTAAG	1 cut(s)	73
BglII	AGATCT	1 cut(s)	212
BisI	GCNGC	1 cut(s)	516
BlsI	GCNGC	1 cut(s)	517
Bme1390I	CCNGG	2 cut(s)	40, 530
Bme18I	GGWCC	1 cut(s)	227
BmgT120I	GGNCC	1 cut(s)	227
BmiI	GGNNCC	2 cut(s)	45, 243
BmrFI	CCNGG	2 cut(s)	40, 530
BmrI	ACTGGG	1 cut(s)	200
BmsI	GCATC	3 cut(s)	76, 90, 328
BmuI	ACTGGG	1 cut(s)	200
BpmI	CTGGAG	1 cut(s)	22
BsaJI	CCNNGG	3 cut(s)	39, 230, 529
BsaXI	ACNNNNNCTCC	2 cut(s)	492, 522
Bsc4I	CCNNNNNNNGG	1 cut(s)	40
Bse1I	ACTGG	1 cut(s)	195
BseBI	CCWGG	2 cut(s)	40, 530
BseDI	CCNNGG	3 cut(s)	39, 230, 529
BseGI	GGATG	3 cut(s)	15, 202, 382
BseLI	CCNNNNNNNGG	1 cut(s)	40
BseMII	CTCAG	4 cut(s)	113, 251, 333, 417
BseNI	ACTGG	1 cut(s)	195
BseRI	GAGGAG	1 cut(s)	395
BseSI	GKGCMC	3 cut(s)	46, 115, 202
BseXI	GCAGC	1 cut(s)	502
BshNI	GGYRCC	1 cut(s)	43
BsiHKAI	GWGCWC	1 cut(s)	115
BslFI	GGGAC	1 cut(s)	140
BslI	CCNNNNNNNGG	1 cut(s)	40
BsmFI	GGGAC	1 cut(s)	140
BsmI	GAATGC	1 cut(s)	84
Bsp1286I	GDGCHC	4 cut(s)	46, 115, 184, 202
Bsp143I	GATC	2 cut(s)	212, 525
BspCNI	CTCAG	4 cut(s)	114, 250, 334, 418
BspLI	GGNNCC	2 cut(s)	45, 243
BspPI	GGATC	1 cut(s)	520
BspT107I	GGYRCC	1 cut(s)	43
BspTI	CTTAAG	1 cut(s)	73
BsrI	ACTGG	1 cut(s)	195
BssECI	CCNNGG	3 cut(s)	39, 230, 529
BssMI	GATC	2 cut(s)	212, 525
BssT1I	CCWWGG	1 cut(s)	230
Bst2UI	CCWGG	2 cut(s)	40, 530
BstAFI	CTTAAG	1 cut(s)	73
BstAPI	GCANNNNNTGC	1 cut(s)	512
BstC8I	GCNNGC	1 cut(s)	550
BstDEI	CTNAG	4 cut(s)	122, 237, 342, 426
BstF5I	GGATG	3 cut(s)	15, 202, 382
BstHHI	GCGC	1 cut(s)	494
BstKTI	GATC	2 cut(s)	215, 528
BstMBI	GATC	2 cut(s)	212, 525
BstMWI	GCNNNNNNNGC	2 cut(s)	491, 512
BstNI	CCWGG	2 cut(s)	40, 530
BstSCI	CCNGG	2 cut(s)	38, 528
BstSLI	GKGCMC	3 cut(s)	46, 115, 202
BstV1I	GCAGC	1 cut(s)	502
BstX2I	RGATCY	1 cut(s)	212
BstYI	RGATCY	1 cut(s)	212
BtsCI	GGATG	3 cut(s)	15, 202, 382
BtsIMutI	CAGTG	1 cut(s)	188
Cac8I	GCNNGC	1 cut(s)	550
CfoI	GCGC	1 cut(s)	494
Cfr13I	GGNCC	1 cut(s)	227
Csp6I	GTAC	1 cut(s)	70
CviJI	RGCY	6 cut(s)	182, 326, 364, 430, 534, 548
CviKI_1	RGCY	6 cut(s)	182, 326, 364, 430, 534, 548
CviQI	GTAC	1 cut(s)	70
DdeI	CTNAG	4 cut(s)	122, 237, 342, 426
DpnI	GATC	2 cut(s)	214, 527
DpnII	GATC	2 cut(s)	212, 525
Eco130I	CCWWGG	1 cut(s)	230
Eco24I	GRGCYC	1 cut(s)	184
Eco47I	GGWCC	1 cut(s)	227
EcoRII	CCWGG	2 cut(s)	38, 528
EcoT14I	CCWWGG	1 cut(s)	230
EcoT38I	GRGCYC	1 cut(s)	184
ErhI	CCWWGG	1 cut(s)	230
FaqI	GGGAC	1 cut(s)	140
Fnu4HI	GCNGC	1 cut(s)	516
FokI	GGATG	3 cut(s)	2, 189, 389
FriOI	GRGCYC	1 cut(s)	184
Fsp4HI	GCNGC	1 cut(s)	516
FspBI	CTAG	1 cut(s)	83
GlaI	GCGC	1 cut(s)	493
GluI	GCNGC	1 cut(s)	516
GsuI	CTGGAG	1 cut(s)	22
HhaI	GCGC	1 cut(s)	494
Hin6I	GCGC	1 cut(s)	492
HinP1I	GCGC	1 cut(s)	492
HinfI	GANTC	3 cut(s)	235, 290, 407
Hpy166II	GTNNAC	2 cut(s)	113, 438
Hpy188I	TCNGA	6 cut(s)	123, 154, 295, 319, 395, 427
Hpy188III	TCNNGA	3 cut(s)	206, 239, 523
Hpy8I	GTNNAC	2 cut(s)	113, 438
HpyAV	CCTTC	1 cut(s)	189
HpyCH4V	TGCA	6 cut(s)	113, 170, 371, 404, 464, 506
HpyF10VI	GCNNNNNNNGC	2 cut(s)	491, 512
HpyF3I	CTNAG	4 cut(s)	122, 237, 342, 426
HspAI	GCGC	1 cut(s)	492
Kzo9I	GATC	2 cut(s)	212, 525
Lsp1109I	GCAGC	1 cut(s)	502
LweI	GCATC	3 cut(s)	76, 90, 328
MaeI	CTAG	1 cut(s)	83
MalI	GATC	2 cut(s)	214, 527
MboI	GATC	2 cut(s)	212, 525
MboII	GAAGA	3 cut(s)	44, 109, 124
MflI	RGATCY	1 cut(s)	212
MhlI	GDGCHC	4 cut(s)	46, 115, 184, 202
MluCI	AATT	1 cut(s)	275
MlyI	GAGTC	1 cut(s)	229
MmeI	TCCRAC	1 cut(s)	478
MnlI	CCTC	8 cut(s)	29, 41, 46, 117, 289, 373, 376, 460
MseI	TTAA	2 cut(s)	65, 74
MspCI	CTTAAG	1 cut(s)	73
MspR9I	CCNGG	2 cut(s)	40, 530
Mva1269I	GAATGC	1 cut(s)	84
MvaI	CCWGG	2 cut(s)	40, 530
MwoI	GCNNNNNNNGC	2 cut(s)	491, 512
NdeII	GATC	2 cut(s)	212, 525
NlaIV	GGNNCC	2 cut(s)	45, 243
PctI	GAATGC	1 cut(s)	84
PfeI	GAWTC	2 cut(s)	290, 407
PkrI	GCNGC	1 cut(s)	517
PleI	GAGTC	1 cut(s)	229
PpsI	GAGTC	1 cut(s)	229
Psp6I	CCWGG	2 cut(s)	38, 528
PspGI	CCWGG	2 cut(s)	38, 528
PspN4I	GGNNCC	2 cut(s)	45, 243
PspPI	GGNCC	1 cut(s)	227
PsuI	RGATCY	1 cut(s)	212
RsaI	GTAC	1 cut(s)	71
RsaNI	GTAC	1 cut(s)	70
SaqAI	TTAA	2 cut(s)	65, 74
SatI	GCNGC	1 cut(s)	516
Sau3AI	GATC	2 cut(s)	212, 525
Sau96I	GGNCC	1 cut(s)	227
SchI	GAGTC	1 cut(s)	229
ScrFI	CCNGG	2 cut(s)	40, 530
SduI	GDGCHC	4 cut(s)	46, 115, 184, 202
SetI	ASST	5 cut(s)	49, 328, 366, 432, 550
SfaNI	GCATC	3 cut(s)	76, 90, 328
SinI	GGWCC	1 cut(s)	227
SmlI	CTYRAG	1 cut(s)	73
SmoI	CTYRAG	1 cut(s)	73
Sse9I	AATT	1 cut(s)	275
SspMI	CTAG	1 cut(s)	83
StyD4I	CCNGG	2 cut(s)	38, 528
StyI	CCWWGG	1 cut(s)	230
TaqI	TCGA	1 cut(s)	139
TasI	AATT	1 cut(s)	275
TatI	WGTACW	1 cut(s)	69
TfiI	GAWTC	2 cut(s)	290, 407
Tru1I	TTAA	2 cut(s)	65, 74
Tru9I	TTAA	2 cut(s)	65, 74
TscAI	CASTG	1 cut(s)	195
TseI	GCWGC	1 cut(s)	515
TspDTI	ATGAA	2 cut(s)	259, 558
TspGWI	ACGGA	1 cut(s)	338
TspRI	CASTG	1 cut(s)	195
Vha464I	CTTAAG	1 cut(s)	73
VneI	GTGCAC	1 cut(s)	111
VpaK11BI	GGWCC	1 cut(s)	227
XspI	CTAG	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.