Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0003986

Physical Location & Seq

Genomic Coordinates Forward (+)

11023107 .. 11024932

Gene Structure 1826 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG130500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGCGGAACCTGTCGTAGTAGACGCGCAGTACCTGAAAGAAATCGAGAAGGCTCGTCGGGACCTCCGCGCTCTCATCTCCAACCGCAACTGCGCTCCCATCATGCTTCGTCTGGCGTGGCACGATGCTGGAACTTACAACGCTGAAACGAAGACTGGAGGGGCAACTGGCTCCATCAGGAATGAGCATGAGTTGGGCCATGCAGCTAATAGTGGTTTGAAAATTGCTGTTAATTTTTGTGAGGAAGTGAAGGCCAAACATCCGAAAATCACATATGCTGACCTTTACCAGCTTGCTGGGGTTGTTGCAGTTGAGGTCACCGGAGGCCCTACTATTGAGTTTGTTCCCGGTAGGAAGGATTCATTGGAATCTCCTGAAGAAGGAAGGCTTCCAGATGCCAAAAAAGGTGCACCACATTTGAAGGACATCTTTTACCGCATGGGTCTGTCTGATAAGGACATTGTCGCACTGTCTGGAGCCCATACATTGGGTAGAGCACATCCAGAAAGGTCCGGCTTTGATGGCCCTTGGACAAAAGAGCCTCTGAAGTTTGACAATTCATACTTTGTGGAGCTACTGAAAGGAGAATCAGAGGGGCTGTTGAAACTACCCACAGACAAGGCTTTATTGGATGATCCTGCGTTCCGCCCCTACGTTGAACTTTATGCAAAGGATGAGGATGCATTTTTCAGAGACTATGCAGCATCACAGAAGAAACTGTCAGAGCTAGGCTTCACTCCACCTCCATCTAGTCTCAAGGAAGCTGAAAAGACTAGTGTCGTAGTGGCACAAAGTGCTGTGGGAGTTGCAGTGGCAGCTGCGGTGGTGATTCTGGGTTACTTATACGAAGTTCATAAAAGAGTCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004130 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0005778 GO:0005911 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009636 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0016020 GO:0016209 GO:0016491 GO:0016684 GO:0016688 GO:0016999 GO:0017001 GO:0017144 GO:0030054 GO:0031090 GO:0031903 GO:0031967 GO:0031975 GO:0033554 GO:0034599 GO:0042221 GO:0042579 GO:0042737 GO:0042743 GO:0042744 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051186 GO:0051187 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0072593 GO:0097237 GO:0098588 GO:0098754 GO:0098805 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko00480 map00053 map00480

Pfam Domains

Protein Families

peroxidase

Protein Analysis

289

Amino Acids

31.61

Weight (kDa)

6.27

Isoelectric Point (pI)

36.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	19 - 225	5.5e-49	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35000
fragaria_vesca	FvH4_1g11491 FvH4_2g01310
malus_domestica	MD05G1120800.v1.1 MD15G1242900.v1.1
prunus_persica	Prupe.7G171200_v2.0.a1 Prupe.8G164400_v2.0.a1 Prupe.8G164400_v2.0.a1
pyrus_communis	pycom05g11470 pycom10g10600
rosa_chinensis	RchiOBHm_Chr2g0099101 RchiOBHm_Chr6g0252051 RchiOBHm_Chr6g0252201
rosa_laevigata	RLG00000015403 RLG00000016848
rosa_multiflora	Rmu_ssc0000165.1_g000002
rosa_roxburghii	Rroxscaffold_2G00143440 Rroxscaffold_7G00216250
rosa_rugosa	Rorug02G0076700 Rorug05G0506000.1
rosa_samantha	Rh2AG125800 Rh2BG129100 Rh2CG130100 Rh2DG130500 Rh6AG019900 Rh6BG015300 Rh6CG011600 Rh6CG012300 Rh6DG013000 Rh6DG013600
rosa_wichuraiana	Rw2G009690 Rw6G000090 Rw6G001630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	487
AccI	GTMKAC	1 cut(s)	21
AccII	CGCG	2 cut(s)	26, 69
AciI	CCGC	6 cut(s)	5, 67, 85, 436, 646, 821
AclWI	GGATC	1 cut(s)	629
AcuI	CTGAAG	2 cut(s)	396, 566
AdeI	CACNNNGTG	1 cut(s)	794
AfaI	GTAC	1 cut(s)	32
AfiI	CCNNNNNNNGG	2 cut(s)	380, 487
AgsI	TTSAA	4 cut(s)	220, 421, 604, 659
AhlI	ACTAGT	1 cut(s)	773
AjuI	GAANNNNNNNTTGG	2 cut(s)	347, 379
AluBI	AGCT	6 cut(s)	206, 292, 574, 727, 764, 818
AluI	AGCT	6 cut(s)	206, 292, 574, 727, 764, 818
Alw21I	GWGCWC	2 cut(s)	412, 499
Alw26I	GTCTC	2 cut(s)	687, 758
Alw44I	GTGCAC	1 cut(s)	408
AlwI	GGATC	1 cut(s)	629
AlwNI	CAGNNNCTG	1 cut(s)	34
AoxI	GGCC	4 cut(s)	196, 252, 325, 523
ApaLI	GTGCAC	1 cut(s)	408
ApeKI	GCWGC	4 cut(s)	203, 701, 815, 818
AspLEI	GCGC	3 cut(s)	28, 71, 95
AspS9I	GGNCC	5 cut(s)	61, 196, 326, 510, 524
AsuC2I	CCSGG	1 cut(s)	348
AsuHPI	GGTGA	2 cut(s)	310, 838
AvaII	GGWCC	2 cut(s)	61, 510
BaeGI	GKGCMC	1 cut(s)	412
BanII	GRGCYC	1 cut(s)	481
BbsI	GAAGAC	1 cut(s)	158
Bbv12I	GWGCWC	2 cut(s)	412, 499
BbvI	GCAGC	4 cut(s)	215, 713, 805, 827
BccI	CCATC	4 cut(s)	107, 182, 515, 754
BcnI	CCSGG	1 cut(s)	348
BcoDI	GTCTC	2 cut(s)	687, 758
BcuI	ACTAGT	1 cut(s)	773
BfaI	CTAG	3 cut(s)	728, 750, 774
BisI	GCNGC	4 cut(s)	204, 702, 816, 819
BlsI	GCNGC	4 cut(s)	205, 703, 817, 820
Bme1390I	CCNGG	1 cut(s)	348
Bme18I	GGWCC	2 cut(s)	61, 510
BmgT120I	GGNCC	5 cut(s)	61, 196, 326, 510, 524
BmiI	GGNNCC	4 cut(s)	9, 62, 172, 478
BmrFI	CCNGG	1 cut(s)	348
BmsI	GCATC	4 cut(s)	115, 385, 670, 713
BoxI	GACNNNNGTC	1 cut(s)	776
BpiI	GAAGAC	1 cut(s)	158
BpmI	CTGGAG	2 cut(s)	177, 495
BpuEI	CTTGAG	1 cut(s)	740
BpuMI	CCSGG	1 cut(s)	348
BsaJI	CCNNGG	1 cut(s)	527
BsaWI	WCCGGW	1 cut(s)	320
BsaXI	ACNNNNNCTCC	4 cut(s)	727, 757, 795, 825
Bsc4I	CCNNNNNNNGG	2 cut(s)	380, 487
Bse1I	ACTGG	2 cut(s)	160, 172
BseDI	CCNNGG	1 cut(s)	527
BseGI	GGATG	5 cut(s)	259, 499, 637, 679, 685
BseLI	CCNNNNNNNGG	2 cut(s)	380, 487
BseNI	ACTGG	2 cut(s)	160, 172
BseSI	GKGCMC	1 cut(s)	412
BseXI	GCAGC	4 cut(s)	215, 713, 805, 827
BseYI	CCCAGC	1 cut(s)	296
Bsh1236I	CGCG	2 cut(s)	26, 69
BshFI	GGCC	4 cut(s)	198, 254, 327, 525
BsiHKAI	GWGCWC	2 cut(s)	412, 499
BsiSI	CCGG	3 cut(s)	321, 348, 513
BslFI	GGGAC	1 cut(s)	74
BslI	CCNNNNNNNGG	2 cut(s)	380, 487
BsmAI	GTCTC	2 cut(s)	687, 758
BsmFI	GGGAC	1 cut(s)	74
BsnI	GGCC	4 cut(s)	198, 254, 327, 525
Bsp1286I	GDGCHC	3 cut(s)	412, 481, 499
Bsp143I	GATC	1 cut(s)	634
BspACI	CCGC	6 cut(s)	5, 67, 85, 436, 646, 821
BspANI	GGCC	4 cut(s)	198, 254, 327, 525
BspFNI	CGCG	2 cut(s)	26, 69
BspLI	GGNNCC	4 cut(s)	9, 62, 172, 478
BspPI	GGATC	1 cut(s)	629
BsrI	ACTGG	2 cut(s)	160, 172
BssECI	CCNNGG	1 cut(s)	527
BssMI	GATC	1 cut(s)	634
BssT1I	CCWWGG	1 cut(s)	527
Bst4CI	ACNGT	2 cut(s)	471, 720
BstAPI	GCANNNNNTGC	1 cut(s)	794
BstC8I	GCNNGC	1 cut(s)	294
BstEII	GGTNACC	1 cut(s)	316
BstENI	CCTNNNNNAGG	1 cut(s)	378
BstF5I	GGATG	5 cut(s)	259, 499, 637, 679, 685
BstFNI	CGCG	2 cut(s)	26, 69
BstHHI	GCGC	3 cut(s)	28, 71, 95
BstKTI	GATC	1 cut(s)	637
BstMAI	GTCTC	2 cut(s)	687, 758
BstMBI	GATC	1 cut(s)	634
BstMWI	GCNNNNNNNGC	3 cut(s)	522, 794, 815
BstPAI	GACNNNNGTC	1 cut(s)	776
BstPI	GGTNACC	1 cut(s)	316
BstSCI	CCNGG	1 cut(s)	346
BstSLI	GKGCMC	1 cut(s)	412
BstUI	CGCG	2 cut(s)	26, 69
BstV1I	GCAGC	4 cut(s)	215, 713, 805, 827
BstV2I	GAAGAC	1 cut(s)	158
BstXI	CCANNNNNNTGG	1 cut(s)	296
BsuRI	GGCC	4 cut(s)	198, 254, 327, 525
BtsCI	GGATG	5 cut(s)	259, 499, 637, 679, 685
BtsI	GCAGTG	1 cut(s)	816
BtsIMutI	CAGTG	2 cut(s)	467, 816
Cac8I	GCNNGC	1 cut(s)	294
CaiI	CAGNNNCTG	1 cut(s)	34
CfoI	GCGC	3 cut(s)	28, 71, 95
Cfr13I	GGNCC	5 cut(s)	61, 196, 326, 510, 524
CseI	GACGC	1 cut(s)	32
Csp6I	GTAC	1 cut(s)	31
CviAII	CATG	4 cut(s)	103, 188, 200, 439
CviQI	GTAC	1 cut(s)	31
DpnI	GATC	1 cut(s)	636
DpnII	GATC	1 cut(s)	634
DraIII	CACNNNGTG	1 cut(s)	794
EciI	GGCGGA	2 cut(s)	20, 635
Eco130I	CCWWGG	1 cut(s)	527
Eco24I	GRGCYC	1 cut(s)	481
Eco47I	GGWCC	2 cut(s)	61, 510
Eco57I	CTGAAG	2 cut(s)	396, 566
Eco91I	GGTNACC	1 cut(s)	316
EcoNI	CCTNNNNNAGG	1 cut(s)	378
EcoO109I	RGGNCCY	2 cut(s)	61, 326
EcoO65I	GGTNACC	1 cut(s)	316
EcoT14I	CCWWGG	1 cut(s)	527
EcoT22I	ATGCAT	1 cut(s)	685
EcoT38I	GRGCYC	1 cut(s)	481
ErhI	CCWWGG	1 cut(s)	527
FaeI	CATG	4 cut(s)	106, 191, 203, 442
FalI	AAGNNNNNCTT	4 cut(s)	372, 404, 413, 445
FaqI	GGGAC	1 cut(s)	74
FatI	CATG	4 cut(s)	102, 187, 199, 438
FauNDI	CATATG	1 cut(s)	274
FblI	GTMKAC	1 cut(s)	21
Fnu4HI	GCNGC	4 cut(s)	204, 702, 816, 819
FokI	GGATG	5 cut(s)	246, 486, 644, 686, 692
FriOI	GRGCYC	1 cut(s)	481
Fsp4HI	GCNGC	4 cut(s)	204, 702, 816, 819
FspBI	CTAG	3 cut(s)	728, 750, 774
GlaI	GCGC	3 cut(s)	27, 70, 94
GluI	GCNGC	4 cut(s)	204, 702, 816, 819
GsaI	CCCAGC	1 cut(s)	300
GsuI	CTGGAG	2 cut(s)	177, 495
HaeIII	GGCC	4 cut(s)	198, 254, 327, 525
HapII	CCGG	3 cut(s)	321, 348, 513
HgaI	GACGC	1 cut(s)	32
HhaI	GCGC	3 cut(s)	28, 71, 95
Hin1II	CATG	4 cut(s)	106, 191, 203, 442
Hin6I	GCGC	3 cut(s)	26, 69, 93
HinP1I	GCGC	3 cut(s)	26, 69, 93
HinfI	GANTC	5 cut(s)	359, 368, 587, 829, 861
HpaII	CCGG	3 cut(s)	321, 348, 513
HphI	GGTGA	2 cut(s)	310, 838
Hpy166II	GTNNAC	2 cut(s)	22, 410
Hpy188I	TCNGA	6 cut(s)	264, 451, 546, 592, 692, 724
Hpy188III	TCNNGA	7 cut(s)	46, 59, 178, 374, 392, 474, 503
Hpy8I	GTNNAC	2 cut(s)	22, 410
Hpy99I	CGWCG	1 cut(s)	60
HpyAV	CCTTC	6 cut(s)	43, 244, 349, 374, 378, 415
HpyCH4III	ACNGT	2 cut(s)	471, 720
HpyCH4IV	ACGT	1 cut(s)	654
HpyCH4V	TGCA	7 cut(s)	203, 308, 410, 668, 683, 701, 809
HpyF10VI	GCNNNNNNNGC	3 cut(s)	522, 794, 815
HpySE526I	ACGT	1 cut(s)	654
Hsp92II	CATG	4 cut(s)	106, 191, 203, 442
HspAI	GCGC	3 cut(s)	26, 69, 93
Kzo9I	GATC	1 cut(s)	634
LmnI	GCTCC	4 cut(s)	100, 176, 476, 571
Lsp1109I	GCAGC	4 cut(s)	215, 713, 805, 827
LweI	GCATC	4 cut(s)	115, 385, 670, 713
MaeI	CTAG	3 cut(s)	728, 750, 774
MaeII	ACGT	1 cut(s)	654
MaeIII	GTNAC	2 cut(s)	316, 836
MalI	GATC	1 cut(s)	636
MboI	GATC	1 cut(s)	634
MboII	GAAGA	3 cut(s)	163, 389, 724
MhlI	GDGCHC	3 cut(s)	412, 481, 499
MluCI	AATT	3 cut(s)	222, 232, 556
MlyI	GAGTC	1 cut(s)	870
MmeI	TCCRAC	1 cut(s)	105
MnlI	CCTC	9 cut(s)	74, 152, 235, 307, 317, 552, 586, 670, 753
Mph1103I	ATGCAT	1 cut(s)	685
MseI	TTAA	1 cut(s)	231
MspA1I	CMGCKG	1 cut(s)	818
MspI	CCGG	3 cut(s)	321, 348, 513
MspR9I	CCNGG	1 cut(s)	348
MvnI	CGCG	2 cut(s)	26, 69
MwoI	GCNNNNNNNGC	3 cut(s)	522, 794, 815
NciI	CCSGG	1 cut(s)	348
NdeI	CATATG	1 cut(s)	274
NdeII	GATC	1 cut(s)	634
NlaIII	CATG	4 cut(s)	106, 191, 203, 442
NlaIV	GGNNCC	4 cut(s)	9, 62, 172, 478
NmuCI	GTSAC	1 cut(s)	316
NsiI	ATGCAT	1 cut(s)	685
PfeI	GAWTC	4 cut(s)	359, 368, 587, 829
PflFI	GACNNNGTC	1 cut(s)	461
PflMI	CCANNNNNTGG	1 cut(s)	487
PkrI	GCNGC	4 cut(s)	205, 703, 817, 820
PleI	GAGTC	1 cut(s)	869
PpsI	GAGTC	1 cut(s)	869
PpuMI	RGGWCCY	1 cut(s)	61
PshAI	GACNNNNGTC	1 cut(s)	776
Psp5II	RGGWCCY	1 cut(s)	61
PspEI	GGTNACC	1 cut(s)	316
PspFI	CCCAGC	1 cut(s)	296
PspN4I	GGNNCC	4 cut(s)	9, 62, 172, 478
PspPI	GGNCC	5 cut(s)	61, 196, 326, 510, 524
PspPPI	RGGWCCY	1 cut(s)	61
PstNI	CAGNNNCTG	1 cut(s)	34
PsyI	GACNNNGTC	1 cut(s)	461
PvuII	CAGCTG	1 cut(s)	818
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
SaqAI	TTAA	1 cut(s)	231
SatI	GCNGC	4 cut(s)	204, 702, 816, 819
Sau3AI	GATC	1 cut(s)	634
Sau96I	GGNCC	5 cut(s)	61, 196, 326, 510, 524
SchI	GAGTC	1 cut(s)	870
ScrFI	CCNGG	1 cut(s)	348
SduI	GDGCHC	3 cut(s)	412, 481, 499
SfaNI	GCATC	4 cut(s)	115, 385, 670, 713
SinI	GGWCC	2 cut(s)	61, 510
SmlI	CTYRAG	1 cut(s)	755
SmoI	CTYRAG	1 cut(s)	755
SpeI	ACTAGT	1 cut(s)	773
Sse9I	AATT	3 cut(s)	222, 232, 556
SsiI	CCGC	6 cut(s)	5, 67, 85, 436, 646, 821
SspMI	CTAG	3 cut(s)	728, 750, 774
StyD4I	CCNGG	1 cut(s)	346
StyI	CCWWGG	1 cut(s)	527
TaaI	ACNGT	2 cut(s)	471, 720
TaiI	ACGT	1 cut(s)	657
TaqI	TCGA	1 cut(s)	45
TasI	AATT	3 cut(s)	222, 232, 556
TfiI	GAWTC	4 cut(s)	359, 368, 587, 829
Tru1I	TTAA	1 cut(s)	231
Tru9I	TTAA	1 cut(s)	231
TscAI	CASTG	2 cut(s)	474, 816
TseFI	GTSAC	1 cut(s)	316
TseI	GCWGC	4 cut(s)	203, 701, 815, 818
Tsp45I	GTSAC	1 cut(s)	316
TspDTI	ATGAA	3 cut(s)	351, 549, 842
TspRI	CASTG	2 cut(s)	474, 816
Tth111I	GACNNNGTC	1 cut(s)	461
Van91I	CCANNNNNTGG	1 cut(s)	487
VneI	GTGCAC	1 cut(s)	408
VpaK11BI	GGWCC	2 cut(s)	61, 510
XagI	CCTNNNNNAGG	1 cut(s)	378
XmiI	GTMKAC	1 cut(s)	21
XspI	CTAG	3 cut(s)	728, 750, 774
Zsp2I	ATGCAT	1 cut(s)	685

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.