Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003986

Physical Location & Seq

Genomic Coordinates Reverse (-)

7272647 .. 7275794

Gene Structure 3148 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22596

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGCAGACTTATACCAGCTTGCTGCTGTTGTTGCTGTTGAGGTCACTGGAGAATATGCTGGTCACTGGAGCCTTCACCATTGATTTTACTCCTGGCAGGAAGGATTCAAAAATTTCTCCCAAGGAAGGACGACTTCCAGATGCTGAAAAAGGTGCACCACATCTGAGGGACATCTTCTATCGAATGGGGTTATCTGACAAGGATATTGTTGCACTCTCTCGGGCGCTGACCACATGCTCATTCTGTGTTAATCTTTTATGGTCTGGTTTTGATGGTCCTTGGACTCAGGAACCCCTGAAGTTCGATAACTCATACTTCGTAGAATTGCTGAAAGGGGAATCAGAGGGATTGCTGAAACTCTCTTCGGATACAGCTCTGTTAGATGATGCTGAGTTCCATAAATATGTTGAAAGTCTCTGTGAATTCTGCATTGACTTAAACTTGATGATCTGCTACTTGGTGCCCTGCCCAAAAATGGGTGATTTGCTGATGGAGATGAGGATGATTGGTGACCTGTGCTGTCTAGATGAGGTGGCATTTTTCAAAGATTTTGAGGAATCACATAAGAAACTCTCTGAGCTTGGGTTTACTTCAAGTTCCTCCAAGATTATTGCAAAGTATAGCACCATACTGGCAGAAGGTGCAGTTGGAGTTGCAGTTTGTGCTGCTGTTGTGATCCTGGGCTATATGAAGTTTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004130 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0005778 GO:0005911 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009636 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0016020 GO:0016209 GO:0016491 GO:0016684 GO:0016688 GO:0016999 GO:0017001 GO:0017144 GO:0030054 GO:0031090 GO:0031903 GO:0031967 GO:0031975 GO:0033554 GO:0034599 GO:0042221 GO:0042579 GO:0042737 GO:0042743 GO:0042744 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051186 GO:0051187 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0072593 GO:0097237 GO:0098588 GO:0098754 GO:0098805 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko00480 map00053 map00480

Pfam Domains

Protein Families

peroxidase

Protein Analysis

233

Amino Acids

25.94

Weight (kDa)

4.9

Isoelectric Point (pI)

29.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	19 - 139	4.8e-15	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35000
fragaria_vesca	FvH4_1g11491 FvH4_2g01310
malus_domestica	MD05G1120800.v1.1 MD15G1242900.v1.1
prunus_persica	Prupe.7G171200_v2.0.a1 Prupe.8G164400_v2.0.a1 Prupe.8G164400_v2.0.a1
pyrus_communis	pycom05g11470 pycom10g10600
rosa_chinensis	RchiOBHm_Chr2g0099101 RchiOBHm_Chr6g0252051 RchiOBHm_Chr6g0252201
rosa_laevigata	RLG00000015403 RLG00000016848
rosa_multiflora	Rmu_ssc0000165.1_g000002
rosa_roxburghii	Rroxscaffold_2G00143440 Rroxscaffold_7G00216250
rosa_rugosa	Rorug02G0076700 Rorug05G0506000.1
rosa_samantha	Rh2AG125800 Rh2BG129100 Rh2CG130100 Rh2DG130500 Rh6AG019900 Rh6BG015300 Rh6CG011600 Rh6CG012300 Rh6DG013000 Rh6DG013600
rosa_wichuraiana	Rw2G009690 Rw6G000090 Rw6G001630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	460
AclWI	GGATC	1 cut(s)	670
AcsI	RAATTY	2 cut(s)	111, 422
AcuI	CTGAAG	1 cut(s)	317
AfiI	CCNNNNNNNGG	3 cut(s)	125, 475, 476
AgsI	TTSAA	4 cut(s)	108, 410, 544, 594
AjnI	CCWGG	2 cut(s)	91, 678
AjuI	GAANNNNNNNTTGG	2 cut(s)	630, 662
AluBI	AGCT	3 cut(s)	18, 374, 580
AluI	AGCT	3 cut(s)	18, 374, 580
Alw21I	GWGCWC	1 cut(s)	157
Alw26I	GTCTC	1 cut(s)	419
Alw44I	GTGCAC	1 cut(s)	153
AlwI	GGATC	1 cut(s)	670
AlwNI	CAGNNNCTG	1 cut(s)	143
Ama87I	CYCGRG	1 cut(s)	219
ApaLI	GTGCAC	1 cut(s)	153
ApeKI	GCWGC	2 cut(s)	22, 665
ApoI	RAATTY	2 cut(s)	111, 422
AspLEI	GCGC	1 cut(s)	226
AspS9I	GGNCC	1 cut(s)	275
AsuHPI	GGTGA	3 cut(s)	67, 491, 521
AvaI	CYCGRG	1 cut(s)	219
AvaII	GGWCC	1 cut(s)	275
BaeGI	GKGCMC	2 cut(s)	157, 465
BanI	GGYRCC	1 cut(s)	460
Bbv12I	GWGCWC	1 cut(s)	157
BbvI	GCAGC	2 cut(s)	9, 652
BccI	CCATC	2 cut(s)	266, 484
BciT130I	CCWGG	2 cut(s)	93, 680
BciVI	GTATCC	1 cut(s)	361
BcoDI	GTCTC	1 cut(s)	419
BfaI	CTAG	1 cut(s)	524
BfoI	RGCGCY	1 cut(s)	227
BfuI	GTATCC	1 cut(s)	361
BisI	GCNGC	2 cut(s)	23, 666
BlsI	GCNGC	2 cut(s)	24, 667
Bme1390I	CCNGG	2 cut(s)	93, 680
Bme18I	GGWCC	1 cut(s)	275
BmeT110I	CYCGRG	1 cut(s)	219
BmgT120I	GGNCC	1 cut(s)	275
BmiI	GGNNCC	3 cut(s)	70, 291, 462
BmrFI	CCNGG	2 cut(s)	93, 680
BmsI	GCATC	2 cut(s)	130, 376
BpmI	CTGGAG	2 cut(s)	68, 87
BsaJI	CCNNGG	3 cut(s)	120, 278, 679
BsaXI	ACNNNNNCTCC	2 cut(s)	642, 672
Bsc4I	CCNNNNNNNGG	3 cut(s)	125, 475, 476
Bse1I	ACTGG	3 cut(s)	51, 70, 636
BseBI	CCWGG	2 cut(s)	93, 680
BseDI	CCNNGG	3 cut(s)	120, 278, 679
BseGI	GGATG	1 cut(s)	507
BseLI	CCNNNNNNNGG	3 cut(s)	125, 475, 476
BseMII	CTCAG	4 cut(s)	155, 299, 381, 567
BseNI	ACTGG	3 cut(s)	51, 70, 636
BseSI	GKGCMC	2 cut(s)	157, 465
BseXI	GCAGC	2 cut(s)	9, 652
BsgI	GTGCAG	1 cut(s)	663
BshNI	GGYRCC	1 cut(s)	460
BsiHKAI	GWGCWC	1 cut(s)	157
BsiHKCI	CYCGRG	1 cut(s)	219
BslFI	GGGAC	1 cut(s)	182
BslI	CCNNNNNNNGG	3 cut(s)	125, 475, 476
BsmAI	GTCTC	1 cut(s)	419
BsmFI	GGGAC	1 cut(s)	182
BsoBI	CYCGRG	1 cut(s)	219
Bsp1286I	GDGCHC	2 cut(s)	157, 465
Bsp143I	GATC	2 cut(s)	447, 675
BspCNI	CTCAG	4 cut(s)	156, 298, 382, 568
BspLI	GGNNCC	3 cut(s)	70, 291, 462
BspPI	GGATC	1 cut(s)	670
BspT107I	GGYRCC	1 cut(s)	460
BsrI	ACTGG	3 cut(s)	51, 70, 636
BssECI	CCNNGG	3 cut(s)	120, 278, 679
BssMI	GATC	2 cut(s)	447, 675
BssT1I	CCWWGG	2 cut(s)	120, 278
Bst2UI	CCWGG	2 cut(s)	93, 680
Bst6I	CTCTTC	1 cut(s)	367
BstAPI	GCANNNNNTGC	2 cut(s)	641, 662
BstC8I	GCNNGC	1 cut(s)	20
BstDEI	CTNAG	4 cut(s)	164, 285, 390, 576
BstEII	GGTNACC	1 cut(s)	509
BstF5I	GGATG	1 cut(s)	507
BstH2I	RGCGCY	1 cut(s)	227
BstHHI	GCGC	1 cut(s)	226
BstKTI	GATC	2 cut(s)	450, 678
BstMAI	GTCTC	1 cut(s)	419
BstMBI	GATC	2 cut(s)	447, 675
BstMWI	GCNNNNNNNGC	3 cut(s)	31, 641, 662
BstNI	CCWGG	2 cut(s)	93, 680
BstNSI	RCATGY	1 cut(s)	237
BstPI	GGTNACC	1 cut(s)	509
BstSCI	CCNGG	2 cut(s)	91, 678
BstSLI	GKGCMC	2 cut(s)	157, 465
BstV1I	GCAGC	2 cut(s)	9, 652
BsuI	GTATCC	1 cut(s)	361
BtsCI	GGATG	1 cut(s)	507
BtsIMutI	CAGTG	2 cut(s)	44, 63
Cac8I	GCNNGC	1 cut(s)	20
CaiI	CAGNNNCTG	1 cut(s)	143
CfoI	GCGC	1 cut(s)	226
Cfr13I	GGNCC	1 cut(s)	275
CviAII	CATG	2 cut(s)	234, 699
CviJI	RGCY	5 cut(s)	18, 71, 374, 580, 684
CviKI_1	RGCY	5 cut(s)	18, 71, 374, 580, 684
DdeI	CTNAG	4 cut(s)	164, 285, 390, 576
DpnI	GATC	2 cut(s)	449, 677
DpnII	GATC	2 cut(s)	447, 675
Eam1104I	CTCTTC	1 cut(s)	367
EarI	CTCTTC	1 cut(s)	367
Eco130I	CCWWGG	2 cut(s)	120, 278
Eco47I	GGWCC	1 cut(s)	275
Eco57I	CTGAAG	1 cut(s)	317
Eco88I	CYCGRG	1 cut(s)	219
Eco91I	GGTNACC	1 cut(s)	509
EcoO65I	GGTNACC	1 cut(s)	509
EcoRI	GAATTC	1 cut(s)	422
EcoRII	CCWGG	2 cut(s)	91, 678
EcoT14I	CCWWGG	2 cut(s)	120, 278
ErhI	CCWWGG	2 cut(s)	120, 278
FaeI	CATG	2 cut(s)	237, 702
FalI	AAGNNNNNCTT	2 cut(s)	117, 149
FaqI	GGGAC	1 cut(s)	182
FatI	CATG	2 cut(s)	233, 698
Fnu4HI	GCNGC	2 cut(s)	23, 666
FokI	GGATG	1 cut(s)	514
Fsp4HI	GCNGC	2 cut(s)	23, 666
FspBI	CTAG	1 cut(s)	524
GlaI	GCGC	1 cut(s)	225
GluI	GCNGC	2 cut(s)	23, 666
GsuI	CTGGAG	2 cut(s)	68, 87
HaeII	RGCGCY	1 cut(s)	227
HhaI	GCGC	1 cut(s)	226
Hin1II	CATG	2 cut(s)	237, 702
Hin6I	GCGC	1 cut(s)	224
HinP1I	GCGC	1 cut(s)	224
HinfI	GANTC	4 cut(s)	104, 283, 338, 557
HphI	GGTGA	3 cut(s)	67, 491, 521
Hpy166II	GTNNAC	2 cut(s)	155, 588
Hpy188I	TCNGA	5 cut(s)	165, 196, 343, 367, 577
Hpy188III	TCNNGA	3 cut(s)	137, 287, 524
Hpy8I	GTNNAC	2 cut(s)	155, 588
HpyAV	CCTTC	4 cut(s)	82, 94, 119, 632
HpyCH4V	TGCA	8 cut(s)	4, 155, 212, 429, 614, 644, 656, 698
HpyF10VI	GCNNNNNNNGC	3 cut(s)	31, 641, 662
HpyF3I	CTNAG	4 cut(s)	164, 285, 390, 576
Hsp92II	CATG	2 cut(s)	237, 702
HspAI	GCGC	1 cut(s)	224
Kzo9I	GATC	2 cut(s)	447, 675
LmnI	GCTCC	1 cut(s)	68
Lsp1109I	GCAGC	2 cut(s)	9, 652
LweI	GCATC	2 cut(s)	130, 376
MaeI	CTAG	1 cut(s)	524
MaeIII	GTNAC	3 cut(s)	42, 61, 509
MalI	GATC	2 cut(s)	449, 677
MboI	GATC	2 cut(s)	447, 675
MboII	GAAGA	2 cut(s)	166, 354
MhlI	GDGCHC	2 cut(s)	157, 465
MluCI	AATT	3 cut(s)	111, 323, 422
MlyI	GAGTC	1 cut(s)	277
MmeI	TCCRAC	1 cut(s)	628
MnlI	CCTC	7 cut(s)	33, 159, 337, 492, 523, 547, 610
MseI	TTAA	2 cut(s)	249, 437
MslI	CAYNNNNRTG	1 cut(s)	402
MspR9I	CCNGG	2 cut(s)	93, 680
MvaI	CCWGG	2 cut(s)	93, 680
MwoI	GCNNNNNNNGC	3 cut(s)	31, 641, 662
NdeII	GATC	2 cut(s)	447, 675
NlaIII	CATG	2 cut(s)	237, 702
NlaIV	GGNNCC	3 cut(s)	70, 291, 462
NmuCI	GTSAC	3 cut(s)	42, 61, 509
NspI	RCATGY	1 cut(s)	237
PfeI	GAWTC	3 cut(s)	104, 338, 557
PkrI	GCNGC	2 cut(s)	24, 667
PleI	GAGTC	1 cut(s)	277
PpsI	GAGTC	1 cut(s)	277
Psp6I	CCWGG	2 cut(s)	91, 678
PspEI	GGTNACC	1 cut(s)	509
PspGI	CCWGG	2 cut(s)	91, 678
PspN4I	GGNNCC	3 cut(s)	70, 291, 462
PspPI	GGNCC	1 cut(s)	275
PstNI	CAGNNNCTG	1 cut(s)	143
RseI	CAYNNNNRTG	1 cut(s)	402
SaqAI	TTAA	2 cut(s)	249, 437
SatI	GCNGC	2 cut(s)	23, 666
Sau3AI	GATC	2 cut(s)	447, 675
Sau96I	GGNCC	1 cut(s)	275
SchI	GAGTC	1 cut(s)	277
ScrFI	CCNGG	2 cut(s)	93, 680
SduI	GDGCHC	2 cut(s)	157, 465
SetI	ASST	8 cut(s)	20, 44, 154, 376, 516, 534, 582, 643
SfaNI	GCATC	2 cut(s)	130, 376
SinI	GGWCC	1 cut(s)	275
SmiMI	CAYNNNNRTG	1 cut(s)	402
Sse9I	AATT	3 cut(s)	111, 323, 422
SspMI	CTAG	1 cut(s)	524
StyD4I	CCNGG	2 cut(s)	91, 678
StyI	CCWWGG	2 cut(s)	120, 278
TaqI	TCGA	2 cut(s)	181, 303
TasI	AATT	3 cut(s)	111, 323, 422
TfiI	GAWTC	3 cut(s)	104, 338, 557
Tru1I	TTAA	2 cut(s)	249, 437
Tru9I	TTAA	2 cut(s)	249, 437
TscAI	CASTG	2 cut(s)	51, 70
TseFI	GTSAC	3 cut(s)	42, 61, 509
TseI	GCWGC	2 cut(s)	22, 665
Tsp45I	GTSAC	3 cut(s)	42, 61, 509
TspRI	CASTG	2 cut(s)	51, 70
VneI	GTGCAC	1 cut(s)	153
VpaK11BI	GGWCC	1 cut(s)	275
XapI	RAATTY	2 cut(s)	111, 422
XbaI	TCTAGA	1 cut(s)	523
XceI	RCATGY	1 cut(s)	237
XspI	CTAG	1 cut(s)	524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.