Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0003986

Physical Location & Seq

Genomic Coordinates Reverse (-)

15105265 .. 15109948

Gene Structure 4684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g11470.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGCGGAGAGGAACGTTCATTAAGCCTATTAGATTAAAACATTTGCACGGTCGGTGCAGCTCCTCATTTGCTGGGCCTTTCGCCCTCGCACTATACCCACCCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAAAACCACATCTGTCCAGCTGCACTATCAATTCAAAATCATCGTTCTCTCTTCGCCCCGAGTCACTGTCGAGCACTCACTTCCGGTTCGGATGACGTCGCCGCTCGTTGACAAAGAGTACCTCAAAGAAATCGACAAGGCTCGCCGCGATCTCCGCGCTCTCATTTACAGCCGAAGCTGCGCTCCGATCATGCTCCGCTTGGCGTGGCACGATGCTGGGACCTACGATGCCAAGACGAAGACGGGTGGGCCGAATGGTTCAATTCGGAACGAGGAGGAGTACTCTCATGGTTCCAACAATGGCTTGAAGAAGGCTATTGATTTTTGTGAGCAAGTGAAGTTGAAGCATCCAAGGATTACATATGCAGACCTATACCAGCTTGCGGGTGTTGTTGCAGTTGAGGTCACTGGAGGCCCCGTCATTGATTTTTCTTCAGGCAGGAAGGATTCTAAAATTTCTCCTAAGGAAGGACGACTTCCAGATGCTAAACGAGGTGCACCACATTTGAGGGAAAGGTTTTATAGAATGGGGCTGTCTGACAAGGATATTGTTGCACTATCTGGGGGTCATACACTGGGAAGGGCACATCCAGACAGATCGGGTTTTGATGGTCCTTGGACTAAGGAACCTCTGCAGTTTGATAACTCATACTTTGTTGAACTGTTGAACGAGGAGTCAGAGGGGTTGTTGAAACTTCCGACAGATGCAGCTTTAGTGGAGGATCGCGTGTGGATCCGTAAATATGTTGATCTGTATTCAAAGGATGCGGAAGCATTTTTTAGAGATTATGCTGAGTCGCATAAGAAACTTTCAGAGCTCGGGTTTACTCCAAACCCCACTTCCTCAAAGACAACTGCTAATGACAGCGCCATACTGGCACAAGGAGCGGTAGGAGTCGCGGTTGCTGCTGTTGTTGTGAGCCTAGGTTACTTGTATGAAGCTCACAAGAGAGCCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004130 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0005778 GO:0005911 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009636 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0016020 GO:0016209 GO:0016491 GO:0016684 GO:0016688 GO:0016999 GO:0017001 GO:0017144 GO:0030054 GO:0031090 GO:0031903 GO:0031967 GO:0031975 GO:0033554 GO:0034599 GO:0042221 GO:0042579 GO:0042737 GO:0042743 GO:0042744 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051186 GO:0051187 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0072593 GO:0097237 GO:0098588 GO:0098754 GO:0098805 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko00480 map00053 map00480

Pfam Domains

Protein Families

peroxidase

Protein Analysis

365

Amino Acids

40.42

Weight (kDa)

9.36

Isoelectric Point (pI)

35.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35000
fragaria_vesca	FvH4_1g11491 FvH4_2g01310
malus_domestica	MD05G1120800.v1.1 MD15G1242900.v1.1
prunus_persica	Prupe.7G171200_v2.0.a1 Prupe.8G164400_v2.0.a1 Prupe.8G164400_v2.0.a1
pyrus_communis	pycom05g11470 pycom10g10600
rosa_chinensis	RchiOBHm_Chr2g0099101 RchiOBHm_Chr6g0252051 RchiOBHm_Chr6g0252201
rosa_laevigata	RLG00000015403 RLG00000016848
rosa_multiflora	Rmu_ssc0000165.1_g000002
rosa_roxburghii	Rroxscaffold_2G00143440 Rroxscaffold_7G00216250
rosa_rugosa	Rorug02G0076700 Rorug05G0506000.1
rosa_samantha	Rh2AG125800 Rh2BG129100 Rh2CG130100 Rh2DG130500 Rh6AG019900 Rh6BG015300 Rh6CG011600 Rh6CG012300 Rh6DG013000 Rh6DG013600
rosa_wichuraiana	Rw2G009690 Rw6G000090 Rw6G001630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	233
AccBSI	CCGCTC	2 cut(s)	238, 1022
AccII	CGCG	4 cut(s)	282, 291, 861, 1034
AciI	CCGC	9 cut(s)	4, 236, 280, 289, 331, 518, 902, 1022, 1034
AclI	AACGTT	1 cut(s)	14
AclWI	GGATC	3 cut(s)	862, 864, 875
AcsI	RAATTY	1 cut(s)	588
AcuI	CTGAAG	1 cut(s)	552
AcyI	GRCGYC	1 cut(s)	230
AfaI	GTAC	2 cut(s)	254, 416
AfiI	CCNNNNNNNGG	2 cut(s)	517, 602
AgsI	TTSAA	8 cut(s)	169, 396, 442, 478, 794, 802, 826, 894
AjuI	GAANNNNNNNTTGG	2 cut(s)	958, 990
AluBI	AGCT	7 cut(s)	60, 154, 312, 514, 845, 952, 1076
AluI	AGCT	7 cut(s)	60, 154, 312, 514, 845, 952, 1076
Alw21I	GWGCWC	3 cut(s)	210, 634, 954
Alw44I	GTGCAC	1 cut(s)	630
AlwI	GGATC	3 cut(s)	862, 864, 875
Ama87I	CYCGRG	2 cut(s)	192, 953
AoxI	GGCC	3 cut(s)	74, 383, 547
ApaLI	GTGCAC	1 cut(s)	630
ApeKI	GCWGC	5 cut(s)	57, 154, 312, 842, 1040
ApoI	RAATTY	1 cut(s)	588
AspA2I	CCTAGG	1 cut(s)	1057
AspLEI	GCGC	3 cut(s)	293, 317, 1004
AspS9I	GGNCC	5 cut(s)	74, 354, 383, 548, 746
AvaI	CYCGRG	2 cut(s)	192, 953
AvaII	GGWCC	2 cut(s)	354, 746
AvrII	CCTAGG	1 cut(s)	1057
AxyI	CCTNAGG	1 cut(s)	597
BaeGI	GKGCMC	2 cut(s)	634, 721
BamHI	GGATCC	1 cut(s)	867
BanII	GRGCYC	1 cut(s)	954
BbsI	GAAGAC	1 cut(s)	380
Bbv12I	GWGCWC	3 cut(s)	210, 634, 954
BbvI	GCAGC	5 cut(s)	69, 141, 299, 854, 1027
BccI	CCATC	1 cut(s)	737
BfaI	CTAG	1 cut(s)	1058
BfmI	CTRYAG	1 cut(s)	767
BfoI	RGCGCY	1 cut(s)	1005
BglI	GCCNNNNNGGC	1 cut(s)	1010
BisI	GCNGC	7 cut(s)	58, 155, 236, 280, 313, 843, 1041
BlnI	CCTAGG	1 cut(s)	1057
BlsI	GCNGC	7 cut(s)	59, 156, 237, 281, 314, 844, 1042
BmcAI	AGTACT	1 cut(s)	416
Bme18I	GGWCC	2 cut(s)	354, 746
BmeT110I	CYCGRG	2 cut(s)	192, 953
BmgT120I	GGNCC	5 cut(s)	74, 354, 383, 548, 746
BmiI	GGNNCC	5 cut(s)	355, 427, 550, 762, 869
BmrI	ACTGGG	1 cut(s)	719
BmsI	GCATC	6 cut(s)	337, 352, 490, 607, 829, 889
BmuI	ACTGGG	1 cut(s)	719
BpiI	GAAGAC	1 cut(s)	380
BplI	GAGNNNNNCTC	2 cut(s)	401, 433
BpmI	CTGGAG	1 cut(s)	564
BsaHI	GRCGYC	1 cut(s)	230
BsaJI	CCNNGG	3 cut(s)	485, 749, 1057
BsaWI	WCCGGW	1 cut(s)	217
BsaXI	ACNNNNNCTCC	4 cut(s)	537, 567, 1020, 1050
Bsc4I	CCNNNNNNNGG	2 cut(s)	517, 602
Bse1I	ACTGG	3 cut(s)	547, 714, 1014
Bse21I	CCTNAGG	1 cut(s)	597
BseDI	CCNNGG	3 cut(s)	485, 749, 1057
BseGI	GGATG	4 cut(s)	231, 481, 721, 904
BseLI	CCNNNNNNNGG	2 cut(s)	517, 602
BseMII	CTCAG	1 cut(s)	918
BseNI	ACTGG	3 cut(s)	547, 714, 1014
BseRI	GAGGAG	4 cut(s)	52, 422, 425, 821
BseSI	GKGCMC	2 cut(s)	634, 721
BseXI	GCAGC	5 cut(s)	69, 141, 299, 854, 1027
BseYI	CCCAGC	2 cut(s)	71, 350
BsgI	GTGCAG	2 cut(s)	76, 140
Bsh1236I	CGCG	4 cut(s)	282, 291, 861, 1034
Bsh1285I	CGRYCG	1 cut(s)	52
BshFI	GGCC	3 cut(s)	76, 385, 549
BsiEI	CGRYCG	1 cut(s)	52
BsiHKAI	GWGCWC	3 cut(s)	210, 634, 954
BsiHKCI	CYCGRG	2 cut(s)	192, 953
BsiSI	CCGG	1 cut(s)	218
BslFI	GGGAC	1 cut(s)	367
BslI	CCNNNNNNNGG	2 cut(s)	517, 602
BsmFI	GGGAC	1 cut(s)	367
BsnI	GGCC	3 cut(s)	76, 385, 549
BsoBI	CYCGRG	2 cut(s)	192, 953
Bsp1286I	GDGCHC	4 cut(s)	210, 634, 721, 954
Bsp143I	GATC	6 cut(s)	283, 321, 731, 856, 867, 883
BspACI	CCGC	9 cut(s)	4, 236, 280, 289, 331, 518, 902, 1022, 1034
BspANI	GGCC	3 cut(s)	76, 385, 549
BspCNI	CTCAG	1 cut(s)	919
BspFNI	CGCG	4 cut(s)	282, 291, 861, 1034
BspLI	GGNNCC	5 cut(s)	355, 427, 550, 762, 869
BspMAI	CTGCAG	1 cut(s)	771
BspPI	GGATC	3 cut(s)	862, 864, 875
BsrBI	CCGCTC	2 cut(s)	238, 1022
BsrI	ACTGG	3 cut(s)	547, 714, 1014
BssECI	CCNNGG	3 cut(s)	485, 749, 1057
BssMI	GATC	6 cut(s)	283, 321, 731, 856, 867, 883
BssNI	GRCGYC	1 cut(s)	230
BssT1I	CCWWGG	3 cut(s)	485, 749, 1057
Bst4CI	ACNGT	3 cut(s)	50, 202, 798
Bst6I	CTCTTC	1 cut(s)	190
BstACI	GRCGYC	1 cut(s)	230
BstC8I	GCNNGC	2 cut(s)	277, 516
BstDEI	CTNAG	3 cut(s)	597, 756, 927
BstENI	CCTNNNNNAGG	1 cut(s)	600
BstF5I	GGATG	4 cut(s)	231, 481, 721, 904
BstFNI	CGCG	4 cut(s)	282, 291, 861, 1034
BstH2I	RGCGCY	1 cut(s)	1005
BstHHI	GCGC	3 cut(s)	293, 317, 1004
BstKTI	GATC	6 cut(s)	286, 324, 734, 859, 870, 886
BstMBI	GATC	6 cut(s)	283, 321, 731, 856, 867, 883
BstMCI	CGRYCG	1 cut(s)	52
BstMWI	GCNNNNNNNGC	5 cut(s)	288, 312, 1010, 1019, 1040
BstSFI	CTRYAG	1 cut(s)	767
BstSLI	GKGCMC	2 cut(s)	634, 721
BstUI	CGCG	4 cut(s)	282, 291, 861, 1034
BstV1I	GCAGC	5 cut(s)	69, 141, 299, 854, 1027
BstV2I	GAAGAC	1 cut(s)	380
BstX2I	RGATCY	1 cut(s)	867
BstYI	RGATCY	1 cut(s)	867
Bsu36I	CCTNAGG	1 cut(s)	597
BsuRI	GGCC	3 cut(s)	76, 385, 549
BtsCI	GGATG	4 cut(s)	231, 481, 721, 904
BtsIMutI	CAGTG	3 cut(s)	198, 540, 707
Cac8I	GCNNGC	2 cut(s)	277, 516
CfoI	GCGC	3 cut(s)	293, 317, 1004
Cfr13I	GGNCC	5 cut(s)	74, 354, 383, 548, 746
Csp6I	GTAC	2 cut(s)	253, 415
CviAII	CATG	2 cut(s)	325, 422
CviQI	GTAC	2 cut(s)	253, 415
DdeI	CTNAG	3 cut(s)	597, 756, 927
DpnI	GATC	6 cut(s)	285, 323, 733, 858, 869, 885
DpnII	GATC	6 cut(s)	283, 321, 731, 856, 867, 883
Eam1104I	CTCTTC	1 cut(s)	190
EarI	CTCTTC	1 cut(s)	190
Ecl136II	GAGCTC	1 cut(s)	952
Eco130I	CCWWGG	3 cut(s)	485, 749, 1057
Eco24I	GRGCYC	1 cut(s)	954
Eco47I	GGWCC	2 cut(s)	354, 746
Eco53kI	GAGCTC	1 cut(s)	952
Eco57I	CTGAAG	1 cut(s)	552
Eco81I	CCTNAGG	1 cut(s)	597
Eco88I	CYCGRG	2 cut(s)	192, 953
EcoICRI	GAGCTC	1 cut(s)	952
EcoNI	CCTNNNNNAGG	1 cut(s)	600
EcoO109I	RGGNCCY	2 cut(s)	354, 548
EcoT14I	CCWWGG	3 cut(s)	485, 749, 1057
EcoT38I	GRGCYC	1 cut(s)	954
ErhI	CCWWGG	3 cut(s)	485, 749, 1057
FaeI	CATG	2 cut(s)	328, 425
FalI	AAGNNNNNCTT	2 cut(s)	594, 626
FaqI	GGGAC	1 cut(s)	367
FatI	CATG	2 cut(s)	324, 421
FauI	CCCGC	1 cut(s)	511
FauNDI	CATATG	1 cut(s)	496
Fnu4HI	GCNGC	7 cut(s)	58, 155, 236, 280, 313, 843, 1041
FokI	GGATG	4 cut(s)	238, 468, 708, 911
FriOI	GRGCYC	1 cut(s)	954
Fsp4HI	GCNGC	7 cut(s)	58, 155, 236, 280, 313, 843, 1041
FspBI	CTAG	1 cut(s)	1058
GlaI	GCGC	3 cut(s)	292, 316, 1003
GluI	GCNGC	7 cut(s)	58, 155, 236, 280, 313, 843, 1041
GsaI	CCCAGC	2 cut(s)	75, 354
GsuI	CTGGAG	1 cut(s)	564
HaeII	RGCGCY	1 cut(s)	1005
HaeIII	GGCC	3 cut(s)	76, 385, 549
HapII	CCGG	1 cut(s)	218
HhaI	GCGC	3 cut(s)	293, 317, 1004
Hin1I	GRCGYC	1 cut(s)	230
Hin1II	CATG	2 cut(s)	328, 425
Hin6I	GCGC	3 cut(s)	291, 315, 1002
HinP1I	GCGC	3 cut(s)	291, 315, 1002
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HinfI	GANTC	5 cut(s)	195, 581, 809, 929, 1029
HpaII	CCGG	1 cut(s)	218
Hpy166II	GTNNAC	3 cut(s)	244, 632, 960
Hpy188I	TCNGA	7 cut(s)	225, 321, 402, 673, 814, 834, 949
Hpy188III	TCNNGA	2 cut(s)	614, 725
Hpy8I	GTNNAC	3 cut(s)	244, 632, 960
Hpy99I	CGWCG	1 cut(s)	235
HpyAV	CCTTC	5 cut(s)	112, 439, 571, 596, 708
HpyCH4III	ACNGT	3 cut(s)	50, 202, 798
HpyCH4IV	ACGT	2 cut(s)	14, 230
HpyCH4V	TGCA	9 cut(s)	46, 57, 157, 500, 530, 632, 689, 769, 842
HpyF10VI	GCNNNNNNNGC	5 cut(s)	288, 312, 1010, 1019, 1040
HpyF3I	CTNAG	3 cut(s)	597, 756, 927
HpySE526I	ACGT	2 cut(s)	14, 230
Hsp92I	GRCGYC	1 cut(s)	230
Hsp92II	CATG	2 cut(s)	328, 425
HspAI	GCGC	3 cut(s)	291, 315, 1002
Kzo9I	GATC	6 cut(s)	283, 321, 731, 856, 867, 883
LmnI	GCTCC	4 cut(s)	65, 322, 333, 1019
Lsp1109I	GCAGC	5 cut(s)	69, 141, 299, 854, 1027
LweI	GCATC	6 cut(s)	337, 352, 490, 607, 829, 889
MaeI	CTAG	1 cut(s)	1058
MaeII	ACGT	2 cut(s)	14, 230
MaeIII	GTNAC	3 cut(s)	196, 538, 1061
MalI	GATC	6 cut(s)	285, 323, 733, 858, 869, 885
MbiI	CCGCTC	2 cut(s)	238, 1022
MboI	GATC	6 cut(s)	283, 321, 731, 856, 867, 883
MboII	GAAGA	4 cut(s)	177, 385, 454, 558
MflI	RGATCY	1 cut(s)	867
MhlI	GDGCHC	4 cut(s)	210, 634, 721, 954
MluCI	AATT	3 cut(s)	164, 396, 588
MlyI	GAGTC	4 cut(s)	204, 818, 938, 1038
MmeI	TCCRAC	2 cut(s)	453, 857
MseI	TTAA	2 cut(s)	21, 35
MspA1I	CMGCKG	1 cut(s)	154
MspI	CCGG	1 cut(s)	218
MvnI	CGCG	4 cut(s)	282, 291, 861, 1034
MwoI	GCNNNNNNNGC	5 cut(s)	288, 312, 1010, 1019, 1040
NdeI	CATATG	1 cut(s)	496
NdeII	GATC	6 cut(s)	283, 321, 731, 856, 867, 883
NlaIII	CATG	2 cut(s)	328, 425
NlaIV	GGNNCC	5 cut(s)	355, 427, 550, 762, 869
NmuCI	GTSAC	2 cut(s)	196, 538
PcsI	WCGNNNNNNNCGW	1 cut(s)	383
PfeI	GAWTC	1 cut(s)	581
PkrI	GCNGC	7 cut(s)	59, 156, 237, 281, 314, 844, 1042
PleI	GAGTC	4 cut(s)	203, 817, 937, 1037
PpsI	GAGTC	4 cut(s)	203, 817, 937, 1037
PpuMI	RGGWCCY	1 cut(s)	354
Psp124BI	GAGCTC	1 cut(s)	954
Psp1406I	AACGTT	1 cut(s)	14
Psp5II	RGGWCCY	1 cut(s)	354
PspFI	CCCAGC	2 cut(s)	71, 350
PspN4I	GGNNCC	5 cut(s)	355, 427, 550, 762, 869
PspPI	GGNCC	5 cut(s)	74, 354, 383, 548, 746
PspPPI	RGGWCCY	1 cut(s)	354
PstI	CTGCAG	1 cut(s)	771
PsuI	RGATCY	1 cut(s)	867
PvuII	CAGCTG	1 cut(s)	154
RsaI	GTAC	2 cut(s)	254, 416
RsaNI	GTAC	2 cut(s)	253, 415
SacI	GAGCTC	1 cut(s)	954
SaqAI	TTAA	2 cut(s)	21, 35
SatI	GCNGC	7 cut(s)	58, 155, 236, 280, 313, 843, 1041
Sau3AI	GATC	6 cut(s)	283, 321, 731, 856, 867, 883
Sau96I	GGNCC	5 cut(s)	74, 354, 383, 548, 746
ScaI	AGTACT	1 cut(s)	416
SchI	GAGTC	4 cut(s)	204, 818, 938, 1038
SduI	GDGCHC	4 cut(s)	210, 634, 721, 954
SfaNI	GCATC	6 cut(s)	337, 352, 490, 607, 829, 889
SfcI	CTRYAG	1 cut(s)	767
SinI	GGWCC	2 cut(s)	354, 746
Sse9I	AATT	3 cut(s)	164, 396, 588
SsiI	CCGC	9 cut(s)	4, 236, 280, 289, 331, 518, 902, 1022, 1034
SspMI	CTAG	1 cut(s)	1058
SstI	GAGCTC	1 cut(s)	954
StyI	CCWWGG	3 cut(s)	485, 749, 1057
TaaI	ACNGT	3 cut(s)	50, 202, 798
TaiI	ACGT	2 cut(s)	17, 233
TaqI	TCGA	2 cut(s)	204, 267
TasI	AATT	3 cut(s)	164, 396, 588
TatI	WGTACW	1 cut(s)	414
TauI	GCSGC	2 cut(s)	238, 282
TfiI	GAWTC	1 cut(s)	581
Tru1I	TTAA	2 cut(s)	21, 35
Tru9I	TTAA	2 cut(s)	21, 35
TscAI	CASTG	3 cut(s)	205, 547, 714
TseFI	GTSAC	2 cut(s)	196, 538
TseI	GCWGC	5 cut(s)	57, 154, 312, 842, 1040
Tsp45I	GTSAC	2 cut(s)	196, 538
TspDTI	ATGAA	2 cut(s)	7, 1086
TspGWI	ACGGA	1 cut(s)	860
TspRI	CASTG	3 cut(s)	205, 547, 714
VneI	GTGCAC	1 cut(s)	630
VpaK11BI	GGWCC	2 cut(s)	354, 746
XagI	CCTNNNNNAGG	1 cut(s)	600
XapI	RAATTY	1 cut(s)	588
XmaJI	CCTAGG	1 cut(s)	1057
XspI	CTAG	1 cut(s)	1058
ZraI	GACGTC	1 cut(s)	231
ZrmI	AGTACT	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.