Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0003986

Physical Location & Seq

Genomic Coordinates Reverse (-)

24321218 .. 24325845

Gene Structure 4628 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1120800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGACGTCGCCGCTCGTTGACAAAGAGTACCTCAAAGAAATCGACAAGGCTCGCCGCGATCTCCGCGCTCTCATTTACAGCCGAAGCTGCGCTCCGATCATGCTCCGCTTGGCGTGGCACGATGCTGGGACCTACGATGCCAAGACGAAGACGGGTGGGCCGAATGGTTCGATTCGGAACGAGGAGGAGTACTCTCATGGTTCCAATAATGGCTTGAAGAAGGCTATTGATTTTTGTGAGGAAGTGAAGTCGAAGCATCCAAGGATTACATATGCAGACCTATACCAGCTTGCGGGTGTTGTTGCAGTTGAGGTCACTGGAGGCCCTGTCATTGATTTTTCTTCAGGCAGGAAGGATTCTAAAATTTCTCCTAAGGAAGGACGACTTCCAGATGCTAAACGAGGTGCACCACATTTGAGGGAAAAGTTTTATAGAATGGGGCTGTCTGACAAGGATATTGTTGCACTATCTGGGGGTCATACACTGGGAAGGGCACATCCAGACAGATCTGGTTTTGATGGTCCTTGGACTAAGGAACCTCTGCAGTTTGATAACTCATACTTTGTTGAACTGTTGAACGAGGAGTCCGAGGGGTTGTTGAAACTTCCGACAGATGCAGCTTTAGTGGAGGATCCTGAGTTCCGTAAATATGTTGATCTGTATGCAAAGGATGCGGAAGCATTTTTTAGAGATTATGCTGAATCGCATAAGAAACTTTCAGAGCTCGGGTTTACTCCAAACCCCACTTCCTCAAAGATAACTGCTAAGGACAGCACCATACTGGCACAAGGAGCGGTAGGAGTCGCGGTTGCTGCTGTTGTTGTGAGCCTAGGCTACTTGTATGAAGCTCACAAAAGAGCCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004130 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0005778 GO:0005911 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009636 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0016020 GO:0016209 GO:0016491 GO:0016684 GO:0016688 GO:0016999 GO:0017001 GO:0017144 GO:0030054 GO:0031090 GO:0031903 GO:0031967 GO:0031975 GO:0033554 GO:0034599 GO:0042221 GO:0042579 GO:0042737 GO:0042743 GO:0042744 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051186 GO:0051187 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0072593 GO:0097237 GO:0098588 GO:0098754 GO:0098805 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko00480 map00053 map00480

Pfam Domains

Protein Families

peroxidase

Protein Analysis

289

Amino Acids

31.83

Weight (kDa)

7.1

Isoelectric Point (pI)

37.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	18 - 224	2.4e-49	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35000
fragaria_vesca	FvH4_1g11491 FvH4_2g01310
malus_domestica	MD05G1120800.v1.1 MD15G1242900.v1.1
prunus_persica	Prupe.7G171200_v2.0.a1 Prupe.8G164400_v2.0.a1 Prupe.8G164400_v2.0.a1
pyrus_communis	pycom05g11470 pycom10g10600
rosa_chinensis	RchiOBHm_Chr2g0099101 RchiOBHm_Chr6g0252051 RchiOBHm_Chr6g0252201
rosa_laevigata	RLG00000015403 RLG00000016848
rosa_multiflora	Rmu_ssc0000165.1_g000002
rosa_roxburghii	Rroxscaffold_2G00143440 Rroxscaffold_7G00216250
rosa_rugosa	Rorug02G0076700 Rorug05G0506000.1
rosa_samantha	Rh2AG125800 Rh2BG129100 Rh2CG130100 Rh2DG130500 Rh6AG019900 Rh6BG015300 Rh6CG011600 Rh6CG012300 Rh6DG013000 Rh6DG013600
rosa_wichuraiana	Rw2G009690 Rw6G000090 Rw6G001630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	8
AccBSI	CCGCTC	2 cut(s)	13, 794
AccII	CGCG	3 cut(s)	57, 66, 806
AciI	CCGC	8 cut(s)	11, 55, 64, 106, 293, 674, 794, 806
AclWI	GGATC	2 cut(s)	626, 639
AcsI	RAATTY	1 cut(s)	363
AcuI	CTGAAG	1 cut(s)	327
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	2 cut(s)	29, 191
AfiI	CCNNNNNNNGG	2 cut(s)	292, 377
AgsI	TTSAA	4 cut(s)	217, 569, 577, 601
AjuI	GAANNNNNNNTTGG	2 cut(s)	730, 762
AloI	GAACNNNNNNTCC	4 cut(s)	569, 601, 623, 655
AluBI	AGCT	5 cut(s)	87, 289, 620, 724, 848
AluI	AGCT	5 cut(s)	87, 289, 620, 724, 848
Alw21I	GWGCWC	2 cut(s)	409, 726
Alw44I	GTGCAC	1 cut(s)	405
AlwI	GGATC	2 cut(s)	626, 639
Ama87I	CYCGRG	1 cut(s)	725
AoxI	GGCC	2 cut(s)	158, 322
ApaLI	GTGCAC	1 cut(s)	405
ApeKI	GCWGC	3 cut(s)	87, 617, 812
ApoI	RAATTY	1 cut(s)	363
AspA2I	CCTAGG	1 cut(s)	829
AspLEI	GCGC	2 cut(s)	68, 92
AspS9I	GGNCC	4 cut(s)	129, 158, 323, 521
AvaI	CYCGRG	1 cut(s)	725
AvaII	GGWCC	2 cut(s)	129, 521
AvrII	CCTAGG	1 cut(s)	829
AxyI	CCTNAGG	1 cut(s)	372
BaeGI	GKGCMC	2 cut(s)	409, 496
BamHI	GGATCC	1 cut(s)	631
BanII	GRGCYC	1 cut(s)	726
BbsI	GAAGAC	1 cut(s)	155
Bbv12I	GWGCWC	2 cut(s)	409, 726
BbvI	GCAGC	3 cut(s)	74, 629, 799
BccI	CCATC	1 cut(s)	512
BfaI	CTAG	1 cut(s)	830
BfmI	CTRYAG	1 cut(s)	542
BglII	AGATCT	1 cut(s)	506
BisI	GCNGC	5 cut(s)	11, 55, 88, 618, 813
BlnI	CCTAGG	1 cut(s)	829
BlsI	GCNGC	5 cut(s)	12, 56, 89, 619, 814
BmcAI	AGTACT	1 cut(s)	191
Bme18I	GGWCC	2 cut(s)	129, 521
BmeT110I	CYCGRG	1 cut(s)	725
BmgT120I	GGNCC	4 cut(s)	129, 158, 323, 521
BmiI	GGNNCC	4 cut(s)	130, 202, 537, 633
BmrI	ACTGGG	1 cut(s)	494
BmsI	GCATC	6 cut(s)	112, 127, 265, 382, 604, 661
BmuI	ACTGGG	1 cut(s)	494
BpiI	GAAGAC	1 cut(s)	155
BplI	GAGNNNNNCTC	2 cut(s)	176, 208
BpmI	CTGGAG	1 cut(s)	339
Bpu10I	CCTNAGC	1 cut(s)	765
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	4 cut(s)	260, 524, 588, 829
BsaXI	ACNNNNNCTCC	4 cut(s)	312, 342, 792, 822
Bsc4I	CCNNNNNNNGG	2 cut(s)	292, 377
Bse1I	ACTGG	3 cut(s)	322, 489, 786
Bse21I	CCTNAGG	1 cut(s)	372
BseDI	CCNNGG	4 cut(s)	260, 524, 588, 829
BseGI	GGATG	3 cut(s)	256, 496, 676
BseLI	CCNNNNNNNGG	2 cut(s)	292, 377
BseMII	CTCAG	1 cut(s)	627
BseNI	ACTGG	3 cut(s)	322, 489, 786
BseRI	GAGGAG	3 cut(s)	197, 200, 596
BseSI	GKGCMC	2 cut(s)	409, 496
BseXI	GCAGC	3 cut(s)	74, 629, 799
BseYI	CCCAGC	1 cut(s)	125
Bsh1236I	CGCG	3 cut(s)	57, 66, 806
BshFI	GGCC	2 cut(s)	160, 324
BsiHKAI	GWGCWC	2 cut(s)	409, 726
BsiHKCI	CYCGRG	1 cut(s)	725
BslFI	GGGAC	1 cut(s)	142
BslI	CCNNNNNNNGG	2 cut(s)	292, 377
BsmFI	GGGAC	1 cut(s)	142
BsnI	GGCC	2 cut(s)	160, 324
BsoBI	CYCGRG	1 cut(s)	725
Bsp1286I	GDGCHC	3 cut(s)	409, 496, 726
Bsp143I	GATC	5 cut(s)	58, 96, 506, 631, 655
BspACI	CCGC	8 cut(s)	11, 55, 64, 106, 293, 674, 794, 806
BspANI	GGCC	2 cut(s)	160, 324
BspCNI	CTCAG	1 cut(s)	628
BspFNI	CGCG	3 cut(s)	57, 66, 806
BspLI	GGNNCC	4 cut(s)	130, 202, 537, 633
BspMAI	CTGCAG	1 cut(s)	546
BspPI	GGATC	2 cut(s)	626, 639
BsrBI	CCGCTC	2 cut(s)	13, 794
BsrI	ACTGG	3 cut(s)	322, 489, 786
BssECI	CCNNGG	4 cut(s)	260, 524, 588, 829
BssMI	GATC	5 cut(s)	58, 96, 506, 631, 655
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	3 cut(s)	260, 524, 829
Bst4CI	ACNGT	1 cut(s)	573
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	671
BstC8I	GCNNGC	2 cut(s)	52, 291
BstDEI	CTNAG	4 cut(s)	372, 531, 636, 765
BstENI	CCTNNNNNAGG	1 cut(s)	375
BstF5I	GGATG	3 cut(s)	256, 496, 676
BstFNI	CGCG	3 cut(s)	57, 66, 806
BstHHI	GCGC	2 cut(s)	68, 92
BstKTI	GATC	5 cut(s)	61, 99, 509, 634, 658
BstMBI	GATC	5 cut(s)	58, 96, 506, 631, 655
BstMWI	GCNNNNNNNGC	5 cut(s)	63, 87, 671, 791, 812
BstSFI	CTRYAG	1 cut(s)	542
BstSLI	GKGCMC	2 cut(s)	409, 496
BstUI	CGCG	3 cut(s)	57, 66, 806
BstV1I	GCAGC	3 cut(s)	74, 629, 799
BstV2I	GAAGAC	1 cut(s)	155
BstX2I	RGATCY	2 cut(s)	506, 631
BstYI	RGATCY	2 cut(s)	506, 631
Bsu36I	CCTNAGG	1 cut(s)	372
BsuRI	GGCC	2 cut(s)	160, 324
BtsCI	GGATG	3 cut(s)	256, 496, 676
BtsIMutI	CAGTG	2 cut(s)	315, 482
Cac8I	GCNNGC	2 cut(s)	52, 291
CfoI	GCGC	2 cut(s)	68, 92
Cfr13I	GGNCC	4 cut(s)	129, 158, 323, 521
Csp6I	GTAC	2 cut(s)	28, 190
CviAII	CATG	2 cut(s)	100, 197
CviQI	GTAC	2 cut(s)	28, 190
DdeI	CTNAG	4 cut(s)	372, 531, 636, 765
DpnI	GATC	5 cut(s)	60, 98, 508, 633, 657
DpnII	GATC	5 cut(s)	58, 96, 506, 631, 655
Ecl136II	GAGCTC	1 cut(s)	724
Eco130I	CCWWGG	3 cut(s)	260, 524, 829
Eco24I	GRGCYC	1 cut(s)	726
Eco47I	GGWCC	2 cut(s)	129, 521
Eco53kI	GAGCTC	1 cut(s)	724
Eco57I	CTGAAG	1 cut(s)	327
Eco81I	CCTNAGG	1 cut(s)	372
Eco88I	CYCGRG	1 cut(s)	725
EcoICRI	GAGCTC	1 cut(s)	724
EcoNI	CCTNNNNNAGG	1 cut(s)	375
EcoO109I	RGGNCCY	2 cut(s)	129, 323
EcoT14I	CCWWGG	3 cut(s)	260, 524, 829
EcoT38I	GRGCYC	1 cut(s)	726
ErhI	CCWWGG	3 cut(s)	260, 524, 829
FaeI	CATG	2 cut(s)	103, 200
FalI	AAGNNNNNCTT	2 cut(s)	369, 401
FaqI	GGGAC	1 cut(s)	142
FatI	CATG	2 cut(s)	99, 196
FauI	CCCGC	1 cut(s)	286
FauNDI	CATATG	1 cut(s)	271
Fnu4HI	GCNGC	5 cut(s)	11, 55, 88, 618, 813
FokI	GGATG	3 cut(s)	243, 483, 683
FriOI	GRGCYC	1 cut(s)	726
Fsp4HI	GCNGC	5 cut(s)	11, 55, 88, 618, 813
FspBI	CTAG	1 cut(s)	830
GlaI	GCGC	2 cut(s)	67, 91
GluI	GCNGC	5 cut(s)	11, 55, 88, 618, 813
GsaI	CCCAGC	1 cut(s)	129
GsuI	CTGGAG	1 cut(s)	339
HaeIII	GGCC	2 cut(s)	160, 324
HhaI	GCGC	2 cut(s)	68, 92
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	103, 200
Hin6I	GCGC	2 cut(s)	66, 90
HinP1I	GCGC	2 cut(s)	66, 90
HincII	GTYRAC	1 cut(s)	19
HindII	GTYRAC	1 cut(s)	19
HinfI	GANTC	5 cut(s)	172, 356, 584, 701, 801
Hpy166II	GTNNAC	3 cut(s)	19, 407, 732
Hpy188I	TCNGA	6 cut(s)	96, 177, 448, 589, 609, 721
Hpy188III	TCNNGA	3 cut(s)	389, 500, 635
Hpy8I	GTNNAC	3 cut(s)	19, 407, 732
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	4 cut(s)	214, 346, 371, 483
HpyCH4III	ACNGT	1 cut(s)	573
HpyCH4IV	ACGT	1 cut(s)	5
HpyCH4V	TGCA	7 cut(s)	275, 305, 407, 464, 544, 617, 665
HpyF10VI	GCNNNNNNNGC	5 cut(s)	63, 87, 671, 791, 812
HpyF3I	CTNAG	4 cut(s)	372, 531, 636, 765
HpySE526I	ACGT	1 cut(s)	5
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	103, 200
HspAI	GCGC	2 cut(s)	66, 90
Kzo9I	GATC	5 cut(s)	58, 96, 506, 631, 655
LmnI	GCTCC	3 cut(s)	97, 108, 791
Lsp1109I	GCAGC	3 cut(s)	74, 629, 799
LweI	GCATC	6 cut(s)	112, 127, 265, 382, 604, 661
MaeI	CTAG	1 cut(s)	830
MaeII	ACGT	1 cut(s)	5
MaeIII	GTNAC	1 cut(s)	313
MalI	GATC	5 cut(s)	60, 98, 508, 633, 657
MbiI	CCGCTC	2 cut(s)	13, 794
MboI	GATC	5 cut(s)	58, 96, 506, 631, 655
MboII	GAAGA	3 cut(s)	160, 229, 333
MflI	RGATCY	2 cut(s)	506, 631
MhlI	GDGCHC	3 cut(s)	409, 496, 726
MluCI	AATT	1 cut(s)	363
MlyI	GAGTC	2 cut(s)	593, 810
MmeI	TCCRAC	1 cut(s)	632
MvnI	CGCG	3 cut(s)	57, 66, 806
MwoI	GCNNNNNNNGC	5 cut(s)	63, 87, 671, 791, 812
NdeI	CATATG	1 cut(s)	271
NdeII	GATC	5 cut(s)	58, 96, 506, 631, 655
NlaIII	CATG	2 cut(s)	103, 200
NlaIV	GGNNCC	4 cut(s)	130, 202, 537, 633
NmuCI	GTSAC	1 cut(s)	313
PcsI	WCGNNNNNNNCGW	2 cut(s)	158, 585
PfeI	GAWTC	3 cut(s)	172, 356, 701
PkrI	GCNGC	5 cut(s)	12, 56, 89, 619, 814
PleI	GAGTC	2 cut(s)	592, 809
PpsI	GAGTC	2 cut(s)	592, 809
PpuMI	RGGWCCY	1 cut(s)	129
Psp124BI	GAGCTC	1 cut(s)	726
Psp5II	RGGWCCY	1 cut(s)	129
PspFI	CCCAGC	1 cut(s)	125
PspN4I	GGNNCC	4 cut(s)	130, 202, 537, 633
PspPI	GGNCC	4 cut(s)	129, 158, 323, 521
PspPPI	RGGWCCY	1 cut(s)	129
PstI	CTGCAG	1 cut(s)	546
PsuI	RGATCY	2 cut(s)	506, 631
RsaI	GTAC	2 cut(s)	29, 191
RsaNI	GTAC	2 cut(s)	28, 190
SacI	GAGCTC	1 cut(s)	726
SatI	GCNGC	5 cut(s)	11, 55, 88, 618, 813
Sau3AI	GATC	5 cut(s)	58, 96, 506, 631, 655
Sau96I	GGNCC	4 cut(s)	129, 158, 323, 521
ScaI	AGTACT	1 cut(s)	191
SchI	GAGTC	2 cut(s)	593, 810
SduI	GDGCHC	3 cut(s)	409, 496, 726
SfaNI	GCATC	6 cut(s)	112, 127, 265, 382, 604, 661
SfcI	CTRYAG	1 cut(s)	542
SinI	GGWCC	2 cut(s)	129, 521
Sse9I	AATT	1 cut(s)	363
SsiI	CCGC	8 cut(s)	11, 55, 64, 106, 293, 674, 794, 806
SspMI	CTAG	1 cut(s)	830
SstI	GAGCTC	1 cut(s)	726
StyI	CCWWGG	3 cut(s)	260, 524, 829
TaaI	ACNGT	1 cut(s)	573
TaiI	ACGT	1 cut(s)	8
TaqI	TCGA	3 cut(s)	42, 170, 251
TasI	AATT	1 cut(s)	363
TatI	WGTACW	1 cut(s)	189
TauI	GCSGC	2 cut(s)	13, 57
TfiI	GAWTC	3 cut(s)	172, 356, 701
TscAI	CASTG	2 cut(s)	322, 489
TseFI	GTSAC	1 cut(s)	313
TseI	GCWGC	3 cut(s)	87, 617, 812
Tsp45I	GTSAC	1 cut(s)	313
TspDTI	ATGAA	1 cut(s)	858
TspGWI	ACGGA	1 cut(s)	632
TspRI	CASTG	2 cut(s)	322, 489
VneI	GTGCAC	1 cut(s)	405
VpaK11BI	GGWCC	2 cut(s)	129, 521
XagI	CCTNNNNNAGG	1 cut(s)	375
XapI	RAATTY	1 cut(s)	363
XmaJI	CCTAGG	1 cut(s)	829
XspI	CTAG	1 cut(s)	830
ZraI	GACGTC	1 cut(s)	6
ZrmI	AGTACT	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.