Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0003986

Physical Location & Seq

Genomic Coordinates Forward (+)

142452 .. 146617

Gene Structure 4166 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G000090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGCGTCGCCGGTCGTCGACAAAGATTACCTCAAAGAAATCGATAAGGCGCGCCGTGATCTCCGTGCTCTCATTTCCAGTAGAAACTGCGCTCCGATCATGCTCCGACTAGCGTGGCACGATGCTGGTACTTACGATGCGAAGACGAAGACCGGTGGGCCTAACGGTTCCATTAGGAATGAAGAAGAGTATACTCATGGCTCTAATAGTGGATTGAAGAAAGCTGTTGATTTTTGCGAGGAAGTGAAGTCTAAGCATCCAAGGATTACTTATGCAGACCTGTACCAGCTTGCTGGTGTTGTTGCTGTTGAGGTCACTGGAGGCCCCACCATTGATTTTACTCCTGGCAGGAAGGATTCAAAAATTTCTCCCAAGGAAGGAAGACTTCCGGATGCGAAAAGAGGTGCACCACATCTGAGGGACATCTTCTATCGAATGGGGTTATCGGACAAGGATATTGTTGCACTCTCTGGGGCTCATACGCTGGGAAGGGCACATCCAGAGAGATCTGGTTTTGATGGTCCTTGGACTCAGGAACCCCTGAAGTTTGATAACTCATACTTCGTAGAATTGCTGAAAGGGGAATCAGAGGGATTGCTGAAACTCCCATCAGATACGGCTCTGTTAGATGATGCTGAGTTCCGTAAATATGTTGAGCTATATGCAAAGGATGAGGAGGCATTTTCCAGAGATTATGCTGAATCACATAAGAAACTCTCTGAGCTTGGGTTTACTACAAGTTCCTCCAAGATTATTGCAAAGGATAGCACCATAATAGCACAAGGCACAGTGGAGTTGCAGTTGTGCTGCTGCTGTGATCCTGGGCTACTTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004130 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0005778 GO:0005911 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009636 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0016020 GO:0016209 GO:0016491 GO:0016684 GO:0016688 GO:0016999 GO:0017001 GO:0017144 GO:0030054 GO:0031090 GO:0031903 GO:0031967 GO:0031975 GO:0033554 GO:0034599 GO:0042221 GO:0042579 GO:0042737 GO:0042743 GO:0042744 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051186 GO:0051187 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0072593 GO:0097237 GO:0098588 GO:0098754 GO:0098805 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko00480 map00053 map00480

Pfam Domains

Protein Families

peroxidase

Protein Analysis

278

Amino Acids

30.7

Weight (kDa)

6.02

Isoelectric Point (pI)

36.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	18 - 224	3.7e-50	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35000
fragaria_vesca	FvH4_1g11491 FvH4_2g01310
malus_domestica	MD05G1120800.v1.1 MD15G1242900.v1.1
prunus_persica	Prupe.7G171200_v2.0.a1 Prupe.8G164400_v2.0.a1 Prupe.8G164400_v2.0.a1
pyrus_communis	pycom05g11470 pycom10g10600
rosa_chinensis	RchiOBHm_Chr2g0099101 RchiOBHm_Chr6g0252051 RchiOBHm_Chr6g0252201
rosa_laevigata	RLG00000015403 RLG00000016848
rosa_multiflora	Rmu_ssc0000165.1_g000002
rosa_roxburghii	Rroxscaffold_2G00143440 Rroxscaffold_7G00216250
rosa_rugosa	Rorug02G0076700 Rorug05G0506000.1
rosa_samantha	Rh2AG125800 Rh2BG129100 Rh2CG130100 Rh2DG130500 Rh6AG019900 Rh6BG015300 Rh6CG011600 Rh6CG012300 Rh6DG013000 Rh6DG013600
rosa_wichuraiana	Rw2G009690 Rw6G000090 Rw6G001630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	18, 191
AccII	CGCG	1 cut(s)	52
AccIII	TCCGGA	1 cut(s)	388
AclWI	GGATC	1 cut(s)	812
AcsI	RAATTY	1 cut(s)	363
AcuI	CTGAAG	1 cut(s)	563
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	2 cut(s)	130, 284
AfiI	CCNNNNNNNGG	1 cut(s)	377
AgeI	ACCGGT	1 cut(s)	152
AgsI	TTSAA	2 cut(s)	217, 360
AjnI	CCWGG	2 cut(s)	343, 820
AluBI	AGCT	4 cut(s)	224, 289, 658, 724
AluI	AGCT	4 cut(s)	224, 289, 658, 724
Alw21I	GWGCWC	2 cut(s)	70, 409
Alw44I	GTGCAC	1 cut(s)	405
AlwI	GGATC	1 cut(s)	812
Aor13HI	TCCGGA	1 cut(s)	388
AoxI	GGCC	2 cut(s)	158, 322
ApaLI	GTGCAC	1 cut(s)	405
ApeKI	GCWGC	2 cut(s)	807, 810
ApoI	RAATTY	1 cut(s)	363
AscI	GGCGCGCC	1 cut(s)	50
AsiGI	ACCGGT	1 cut(s)	152
AspLEI	GCGC	3 cut(s)	52, 54, 92
AspS9I	GGNCC	3 cut(s)	158, 323, 521
AvaII	GGWCC	1 cut(s)	521
BaeGI	GKGCMC	2 cut(s)	409, 496
BanII	GRGCYC	1 cut(s)	478
BbsI	GAAGAC	3 cut(s)	149, 155, 388
Bbv12I	GWGCWC	2 cut(s)	70, 409
BbvI	GCAGC	2 cut(s)	794, 797
BccI	CCATC	2 cut(s)	512, 616
BceAI	ACGGC	2 cut(s)	39, 633
BciT130I	CCWGG	2 cut(s)	345, 822
BfaI	CTAG	1 cut(s)	110
BglII	AGATCT	1 cut(s)	506
BisI	GCNGC	2 cut(s)	808, 811
BlsI	GCNGC	2 cut(s)	809, 812
Bme1390I	CCNGG	2 cut(s)	345, 822
Bme18I	GGWCC	1 cut(s)	521
BmgT120I	GGNCC	3 cut(s)	158, 323, 521
BmiI	GGNNCC	3 cut(s)	169, 325, 537
BmrFI	CCNGG	2 cut(s)	345, 822
BmsI	GCATC	5 cut(s)	112, 127, 265, 382, 622
BpiI	GAAGAC	3 cut(s)	149, 155, 388
BpmI	CTGGAG	1 cut(s)	339
Bsa29I	ATCGAT	1 cut(s)	42
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	4 cut(s)	260, 372, 524, 821
BsaWI	WCCGGW	2 cut(s)	152, 388
BsaXI	ACNNNNNCTCC	2 cut(s)	785, 815
Bsc4I	CCNNNNNNNGG	1 cut(s)	377
Bse118I	RCCGGY	2 cut(s)	10, 152
Bse1I	ACTGG	2 cut(s)	78, 322
BseAI	TCCGGA	1 cut(s)	388
BseBI	CCWGG	2 cut(s)	345, 822
BseCI	ATCGAT	1 cut(s)	42
BseDI	CCNNGG	4 cut(s)	260, 372, 524, 821
BseGI	GGATG	4 cut(s)	256, 397, 496, 676
BseLI	CCNNNNNNNGG	1 cut(s)	377
BseMII	CTCAG	4 cut(s)	407, 545, 627, 711
BseNI	ACTGG	2 cut(s)	78, 322
BsePI	GCGCGC	1 cut(s)	50
BseRI	GAGGAG	1 cut(s)	689
BseSI	GKGCMC	2 cut(s)	409, 496
BseXI	GCAGC	2 cut(s)	794, 797
BseYI	CCCAGC	1 cut(s)	484
Bsh1236I	CGCG	1 cut(s)	52
Bsh1285I	CGRYCG	1 cut(s)	15
BshFI	GGCC	2 cut(s)	160, 324
BshTI	ACCGGT	1 cut(s)	152
BshVI	ATCGAT	1 cut(s)	42
BsiEI	CGRYCG	1 cut(s)	15
BsiHKAI	GWGCWC	2 cut(s)	70, 409
BsiSI	CCGG	3 cut(s)	11, 153, 389
BslFI	GGGAC	1 cut(s)	434
BslI	CCNNNNNNNGG	1 cut(s)	377
BsmFI	GGGAC	1 cut(s)	434
BsnI	GGCC	2 cut(s)	160, 324
Bsp1286I	GDGCHC	4 cut(s)	70, 409, 478, 496
Bsp13I	TCCGGA	1 cut(s)	388
Bsp143I	GATC	4 cut(s)	58, 96, 506, 817
BspANI	GGCC	2 cut(s)	160, 324
BspCNI	CTCAG	4 cut(s)	408, 544, 628, 712
BspDI	ATCGAT	1 cut(s)	42
BspEI	TCCGGA	1 cut(s)	388
BspFNI	CGCG	1 cut(s)	52
BspLI	GGNNCC	3 cut(s)	169, 325, 537
BspPI	GGATC	1 cut(s)	812
BsrFI	RCCGGY	2 cut(s)	10, 152
BsrI	ACTGG	2 cut(s)	78, 322
BssAI	RCCGGY	2 cut(s)	10, 152
BssECI	CCNNGG	4 cut(s)	260, 372, 524, 821
BssHII	GCGCGC	1 cut(s)	50
BssMI	GATC	4 cut(s)	58, 96, 506, 817
BssNAI	GTATAC	1 cut(s)	192
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	3 cut(s)	260, 372, 524
Bst1107I	GTATAC	1 cut(s)	192
Bst2UI	CCWGG	2 cut(s)	345, 822
Bst4CI	ACNGT	2 cut(s)	167, 790
Bst6I	CTCTTC	1 cut(s)	180
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	2 cut(s)	52, 291
BstDEI	CTNAG	5 cut(s)	252, 416, 531, 636, 720
BstF5I	GGATG	4 cut(s)	256, 397, 496, 676
BstFNI	CGCG	1 cut(s)	52
BstHHI	GCGC	3 cut(s)	52, 54, 92
BstKTI	GATC	4 cut(s)	61, 99, 509, 820
BstMBI	GATC	4 cut(s)	58, 96, 506, 817
BstMCI	CGRYCG	1 cut(s)	15
BstNI	CCWGG	2 cut(s)	345, 822
BstSCI	CCNGG	2 cut(s)	343, 820
BstSLI	GKGCMC	2 cut(s)	409, 496
BstUI	CGCG	1 cut(s)	52
BstV1I	GCAGC	2 cut(s)	794, 797
BstV2I	GAAGAC	3 cut(s)	149, 155, 388
BstX2I	RGATCY	1 cut(s)	506
BstXI	CCANNNNNNTGG	1 cut(s)	293
BstYI	RGATCY	1 cut(s)	506
BstZ17I	GTATAC	1 cut(s)	192
Bsu15I	ATCGAT	1 cut(s)	42
BsuRI	GGCC	2 cut(s)	160, 324
BsuTUI	ATCGAT	1 cut(s)	42
BtsCI	GGATG	4 cut(s)	256, 397, 496, 676
BtsIMutI	CAGTG	2 cut(s)	315, 795
Cac8I	GCNNGC	2 cut(s)	52, 291
CfoI	GCGC	3 cut(s)	52, 54, 92
Cfr10I	RCCGGY	2 cut(s)	10, 152
Cfr13I	GGNCC	3 cut(s)	158, 323, 521
ClaI	ATCGAT	1 cut(s)	42
Csp6I	GTAC	2 cut(s)	129, 283
CspAI	ACCGGT	1 cut(s)	152
CviAII	CATG	2 cut(s)	100, 197
CviQI	GTAC	2 cut(s)	129, 283
DdeI	CTNAG	5 cut(s)	252, 416, 531, 636, 720
DpnI	GATC	4 cut(s)	60, 98, 508, 819
DpnII	GATC	4 cut(s)	58, 96, 506, 817
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
Eco130I	CCWWGG	3 cut(s)	260, 372, 524
Eco24I	GRGCYC	1 cut(s)	478
Eco47I	GGWCC	1 cut(s)	521
Eco57I	CTGAAG	1 cut(s)	563
EcoO109I	RGGNCCY	1 cut(s)	323
EcoRII	CCWGG	2 cut(s)	343, 820
EcoT14I	CCWWGG	3 cut(s)	260, 372, 524
EcoT38I	GRGCYC	1 cut(s)	478
ErhI	CCWWGG	3 cut(s)	260, 372, 524
FaeI	CATG	2 cut(s)	103, 200
FalI	AAGNNNNNCTT	4 cut(s)	253, 285, 369, 401
FaqI	GGGAC	1 cut(s)	434
FatI	CATG	2 cut(s)	99, 196
FblI	GTMKAC	2 cut(s)	18, 191
Fnu4HI	GCNGC	2 cut(s)	808, 811
FokI	GGATG	4 cut(s)	243, 404, 483, 683
FriOI	GRGCYC	1 cut(s)	478
Fsp4HI	GCNGC	2 cut(s)	808, 811
FspBI	CTAG	1 cut(s)	110
GlaI	GCGC	3 cut(s)	51, 53, 91
GluI	GCNGC	2 cut(s)	808, 811
GsaI	CCCAGC	1 cut(s)	488
GsuI	CTGGAG	1 cut(s)	339
HaeIII	GGCC	2 cut(s)	160, 324
HapII	CCGG	3 cut(s)	11, 153, 389
HhaI	GCGC	3 cut(s)	52, 54, 92
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	103, 200
Hin6I	GCGC	3 cut(s)	50, 52, 90
HinP1I	GCGC	3 cut(s)	50, 52, 90
HincII	GTYRAC	1 cut(s)	19
HindII	GTYRAC	1 cut(s)	19
HinfI	GANTC	4 cut(s)	356, 529, 584, 701
HpaII	CCGG	3 cut(s)	11, 153, 389
Hpy166II	GTNNAC	4 cut(s)	19, 192, 407, 732
Hpy188I	TCNGA	7 cut(s)	96, 107, 417, 448, 589, 613, 721
Hpy188III	TCNNGA	4 cut(s)	389, 500, 533, 687
Hpy8I	GTNNAC	4 cut(s)	19, 192, 407, 732
Hpy99I	CGWCG	2 cut(s)	10, 20
HpyAV	CCTTC	3 cut(s)	346, 371, 483
HpyCH4III	ACNGT	2 cut(s)	167, 790
HpyCH4V	TGCA	6 cut(s)	275, 407, 464, 665, 758, 799
HpyF3I	CTNAG	5 cut(s)	252, 416, 531, 636, 720
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	103, 200
HspAI	GCGC	3 cut(s)	50, 52, 90
Kpn2I	TCCGGA	1 cut(s)	388
Kzo9I	GATC	4 cut(s)	58, 96, 506, 817
LmnI	GCTCC	2 cut(s)	97, 108
Lsp1109I	GCAGC	2 cut(s)	794, 797
LweI	GCATC	5 cut(s)	112, 127, 265, 382, 622
MaeI	CTAG	1 cut(s)	110
MaeIII	GTNAC	1 cut(s)	313
MalI	GATC	4 cut(s)	60, 98, 508, 819
MboI	GATC	4 cut(s)	58, 96, 506, 817
MboII	GAAGA	7 cut(s)	154, 160, 194, 197, 229, 393, 418
MflI	RGATCY	1 cut(s)	506
MhlI	GDGCHC	4 cut(s)	70, 409, 478, 496
MluCI	AATT	2 cut(s)	363, 569
MlyI	GAGTC	1 cut(s)	523
MmeI	TCCRAC	1 cut(s)	130
MroI	TCCGGA	1 cut(s)	388
MspI	CCGG	3 cut(s)	11, 153, 389
MspR9I	CCNGG	2 cut(s)	345, 822
MvaI	CCWGG	2 cut(s)	345, 822
MvnI	CGCG	1 cut(s)	52
NdeII	GATC	4 cut(s)	58, 96, 506, 817
NlaIII	CATG	2 cut(s)	103, 200
NlaIV	GGNNCC	3 cut(s)	169, 325, 537
NmuCI	GTSAC	1 cut(s)	313
PalAI	GGCGCGCC	1 cut(s)	50
PauI	GCGCGC	1 cut(s)	50
PfeI	GAWTC	3 cut(s)	356, 584, 701
PinAI	ACCGGT	1 cut(s)	152
PkrI	GCNGC	2 cut(s)	809, 812
PleI	GAGTC	1 cut(s)	523
PpsI	GAGTC	1 cut(s)	523
Psp6I	CCWGG	2 cut(s)	343, 820
PspFI	CCCAGC	1 cut(s)	484
PspGI	CCWGG	2 cut(s)	343, 820
PspN4I	GGNNCC	3 cut(s)	169, 325, 537
PspPI	GGNCC	3 cut(s)	158, 323, 521
PsuI	RGATCY	1 cut(s)	506
PteI	GCGCGC	1 cut(s)	50
RsaI	GTAC	2 cut(s)	130, 284
RsaNI	GTAC	2 cut(s)	129, 283
SalI	GTCGAC	1 cut(s)	17
SatI	GCNGC	2 cut(s)	808, 811
Sau3AI	GATC	4 cut(s)	58, 96, 506, 817
Sau96I	GGNCC	3 cut(s)	158, 323, 521
SchI	GAGTC	1 cut(s)	523
ScrFI	CCNGG	2 cut(s)	345, 822
SduI	GDGCHC	4 cut(s)	70, 409, 478, 496
SetI	ASST	8 cut(s)	33, 226, 282, 291, 315, 406, 660, 726
SfaNI	GCATC	5 cut(s)	112, 127, 265, 382, 622
SgsI	GGCGCGCC	1 cut(s)	50
SinI	GGWCC	1 cut(s)	521
Sse9I	AATT	2 cut(s)	363, 569
SspMI	CTAG	1 cut(s)	110
StyD4I	CCNGG	2 cut(s)	343, 820
StyI	CCWWGG	3 cut(s)	260, 372, 524
TaaI	ACNGT	2 cut(s)	167, 790
TaqI	TCGA	3 cut(s)	18, 42, 433
TasI	AATT	2 cut(s)	363, 569
TfiI	GAWTC	3 cut(s)	356, 584, 701
TscAI	CASTG	2 cut(s)	322, 795
TseFI	GTSAC	1 cut(s)	313
TseI	GCWGC	2 cut(s)	807, 810
Tsp45I	GTSAC	1 cut(s)	313
TspDTI	ATGAA	1 cut(s)	195
TspGWI	ACGGA	2 cut(s)	53, 632
TspRI	CASTG	2 cut(s)	322, 795
VneI	GTGCAC	1 cut(s)	405
VpaK11BI	GGWCC	1 cut(s)	521
XapI	RAATTY	1 cut(s)	363
XmiI	GTMKAC	2 cut(s)	18, 191
XspI	CTAG	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.