Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0003986

Physical Location & Seq

Genomic Coordinates Forward (+)

11450329 .. 11452185

Gene Structure 1857 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG125800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGCGGAACCTGTCGTAGACGCGCAGTACCTGAAAGAAATCGAGAAGGCTCGTCGGGACCTCCGCGCTCTCATCTCCAACCGCAACTGCGCTCCCATCATGCTTCGTCTGGCGTGGCACGATGCTGGAACTTACAACGCTGAAACGAAGACTGGAGGGGCAACTGGCTCCATCAGGAATGAGCATGAGCTGGGCCATGCAGCTAATAGTGGTTTGAAAATTGCTGTTAATTTTTGTGAGGAAGTGAAAGCCAAACATCCGAAAATCACATATGCTGACCTTTACCAGCTTGCTGGGGTTGTTGCAGTCGAGGTCACCGGAGGCCCTACTATTGAGTTTGTTCCCGGTAGGAAGGATTCATTGGAATCTCCTGAAGAAGGAAGGCTTCCAGATGCCAAAAAAGGTGCACCACATTTGAAGGACATCTTTTACCGCATGGGTCTGTCTGATAAGGACATTGTGGCACTGTCTGGAGCCCATACATTGGGTAGAGCACATCCAGAAAGGTCCGGCTTTGATGGCCCTTGGACAAAAGAGCCTCTGAAGTTTGACAATTCATACTTTGTGGAGCTACTGAAAGGAGAATCAGAGGGGCTGTTGAAACTACCCACAGACAAGGCTTTATTGGATGATCCTGCGTTCCGCCCCTACGTTGAACTTTATGCAAAGGATGAGGATGCATTTTTCAGAGACTATGCAGCATCACAGAAGAAACTGTCAGAGCTAGGCTTCACTCCACCTCCATCTAGTCTCAAGGAAGCTGAAAAGACTAGTGTCGTAGTGGCACAAAGTGCTGTGGGAGTTGCAGTTGCAGCTGCGGTGGTGATTCTGGGTTACTTATACGAAGTTCATAAAAGTGTCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004130 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0005778 GO:0005911 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009636 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0016020 GO:0016209 GO:0016491 GO:0016684 GO:0016688 GO:0016999 GO:0017001 GO:0017144 GO:0030054 GO:0031090 GO:0031903 GO:0031967 GO:0031975 GO:0033554 GO:0034599 GO:0042221 GO:0042579 GO:0042737 GO:0042743 GO:0042744 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051186 GO:0051187 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0072593 GO:0097237 GO:0098588 GO:0098754 GO:0098805 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko00480 map00053 map00480

Pfam Domains

Protein Families

peroxidase

Protein Analysis

288

Amino Acids

31.44

Weight (kDa)

6.1

Isoelectric Point (pI)

35.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	18 - 224	5.4e-49	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35000
fragaria_vesca	FvH4_1g11491 FvH4_2g01310
malus_domestica	MD05G1120800.v1.1 MD15G1242900.v1.1
prunus_persica	Prupe.7G171200_v2.0.a1 Prupe.8G164400_v2.0.a1 Prupe.8G164400_v2.0.a1
pyrus_communis	pycom05g11470 pycom10g10600
rosa_chinensis	RchiOBHm_Chr2g0099101 RchiOBHm_Chr6g0252051 RchiOBHm_Chr6g0252201
rosa_laevigata	RLG00000015403 RLG00000016848
rosa_multiflora	Rmu_ssc0000165.1_g000002
rosa_roxburghii	Rroxscaffold_2G00143440 Rroxscaffold_7G00216250
rosa_rugosa	Rorug02G0076700 Rorug05G0506000.1
rosa_samantha	Rh2AG125800 Rh2BG129100 Rh2CG130100 Rh2DG130500 Rh6AG019900 Rh6BG015300 Rh6CG011600 Rh6CG012300 Rh6DG013000 Rh6DG013600
rosa_wichuraiana	Rw2G009690 Rw6G000090 Rw6G001630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	484
AccI	GTMKAC	1 cut(s)	18
AccII	CGCG	2 cut(s)	23, 66
AciI	CCGC	6 cut(s)	5, 64, 82, 433, 643, 818
AclWI	GGATC	1 cut(s)	626
AcuI	CTGAAG	2 cut(s)	393, 563
AdeI	CACNNNGTG	1 cut(s)	791
AfaI	GTAC	1 cut(s)	29
AfiI	CCNNNNNNNGG	2 cut(s)	377, 484
AgsI	TTSAA	4 cut(s)	217, 418, 601, 656
AhlI	ACTAGT	1 cut(s)	770
AjuI	GAANNNNNNNTTGG	2 cut(s)	344, 376
AluBI	AGCT	7 cut(s)	190, 203, 289, 571, 724, 761, 815
AluI	AGCT	7 cut(s)	190, 203, 289, 571, 724, 761, 815
Alw21I	GWGCWC	2 cut(s)	409, 496
Alw26I	GTCTC	2 cut(s)	684, 755
Alw44I	GTGCAC	1 cut(s)	405
AlwI	GGATC	1 cut(s)	626
AlwNI	CAGNNNCTG	1 cut(s)	31
AoxI	GGCC	3 cut(s)	193, 322, 520
ApaLI	GTGCAC	1 cut(s)	405
ApeKI	GCWGC	4 cut(s)	200, 698, 812, 815
AspLEI	GCGC	3 cut(s)	25, 68, 92
AspS9I	GGNCC	5 cut(s)	58, 193, 323, 507, 521
AsuC2I	CCSGG	1 cut(s)	345
AsuHPI	GGTGA	2 cut(s)	307, 835
AvaII	GGWCC	2 cut(s)	58, 507
BaeGI	GKGCMC	1 cut(s)	409
BanII	GRGCYC	1 cut(s)	478
BbsI	GAAGAC	1 cut(s)	155
Bbv12I	GWGCWC	2 cut(s)	409, 496
BbvI	GCAGC	4 cut(s)	212, 710, 802, 824
BccI	CCATC	4 cut(s)	104, 179, 512, 751
BcnI	CCSGG	1 cut(s)	345
BcoDI	GTCTC	2 cut(s)	684, 755
BcuI	ACTAGT	1 cut(s)	770
BfaI	CTAG	3 cut(s)	725, 747, 771
BisI	GCNGC	4 cut(s)	201, 699, 813, 816
BlsI	GCNGC	4 cut(s)	202, 700, 814, 817
Bme1390I	CCNGG	1 cut(s)	345
Bme18I	GGWCC	2 cut(s)	58, 507
BmgT120I	GGNCC	5 cut(s)	58, 193, 323, 507, 521
BmiI	GGNNCC	4 cut(s)	9, 59, 169, 475
BmrFI	CCNGG	1 cut(s)	345
BmsI	GCATC	4 cut(s)	112, 382, 667, 710
BoxI	GACNNNNGTC	1 cut(s)	773
BpiI	GAAGAC	1 cut(s)	155
BpmI	CTGGAG	2 cut(s)	174, 492
BpuEI	CTTGAG	1 cut(s)	737
BpuMI	CCSGG	1 cut(s)	345
BsaJI	CCNNGG	1 cut(s)	524
BsaWI	WCCGGW	1 cut(s)	317
BsaXI	ACNNNNNCTCC	4 cut(s)	724, 754, 792, 822
Bsc4I	CCNNNNNNNGG	2 cut(s)	377, 484
Bse1I	ACTGG	2 cut(s)	157, 169
BseDI	CCNNGG	1 cut(s)	524
BseGI	GGATG	5 cut(s)	256, 496, 634, 676, 682
BseLI	CCNNNNNNNGG	2 cut(s)	377, 484
BseNI	ACTGG	2 cut(s)	157, 169
BseSI	GKGCMC	1 cut(s)	409
BseXI	GCAGC	4 cut(s)	212, 710, 802, 824
BseYI	CCCAGC	2 cut(s)	190, 293
Bsh1236I	CGCG	2 cut(s)	23, 66
BshFI	GGCC	3 cut(s)	195, 324, 522
BsiHKAI	GWGCWC	2 cut(s)	409, 496
BsiSI	CCGG	3 cut(s)	318, 345, 510
BslFI	GGGAC	1 cut(s)	71
BslI	CCNNNNNNNGG	2 cut(s)	377, 484
BsmAI	GTCTC	2 cut(s)	684, 755
BsmFI	GGGAC	1 cut(s)	71
BsnI	GGCC	3 cut(s)	195, 324, 522
Bsp1286I	GDGCHC	3 cut(s)	409, 478, 496
Bsp143I	GATC	1 cut(s)	631
BspACI	CCGC	6 cut(s)	5, 64, 82, 433, 643, 818
BspANI	GGCC	3 cut(s)	195, 324, 522
BspFNI	CGCG	2 cut(s)	23, 66
BspLI	GGNNCC	4 cut(s)	9, 59, 169, 475
BspPI	GGATC	1 cut(s)	626
BsrI	ACTGG	2 cut(s)	157, 169
BssECI	CCNNGG	1 cut(s)	524
BssMI	GATC	1 cut(s)	631
BssT1I	CCWWGG	1 cut(s)	524
Bst4CI	ACNGT	2 cut(s)	468, 717
BstAPI	GCANNNNNTGC	1 cut(s)	791
BstC8I	GCNNGC	1 cut(s)	291
BstEII	GGTNACC	1 cut(s)	313
BstENI	CCTNNNNNAGG	1 cut(s)	375
BstF5I	GGATG	5 cut(s)	256, 496, 634, 676, 682
BstFNI	CGCG	2 cut(s)	23, 66
BstHHI	GCGC	3 cut(s)	25, 68, 92
BstKTI	GATC	1 cut(s)	634
BstMAI	GTCTC	2 cut(s)	684, 755
BstMBI	GATC	1 cut(s)	631
BstMWI	GCNNNNNNNGC	3 cut(s)	519, 791, 812
BstPAI	GACNNNNGTC	1 cut(s)	773
BstPI	GGTNACC	1 cut(s)	313
BstSCI	CCNGG	1 cut(s)	343
BstSLI	GKGCMC	1 cut(s)	409
BstUI	CGCG	2 cut(s)	23, 66
BstV1I	GCAGC	4 cut(s)	212, 710, 802, 824
BstV2I	GAAGAC	1 cut(s)	155
BstXI	CCANNNNNNTGG	1 cut(s)	293
BsuRI	GGCC	3 cut(s)	195, 324, 522
BtsCI	GGATG	5 cut(s)	256, 496, 634, 676, 682
BtsIMutI	CAGTG	1 cut(s)	464
Cac8I	GCNNGC	1 cut(s)	291
CaiI	CAGNNNCTG	1 cut(s)	31
CfoI	GCGC	3 cut(s)	25, 68, 92
Cfr13I	GGNCC	5 cut(s)	58, 193, 323, 507, 521
CseI	GACGC	1 cut(s)	29
Csp6I	GTAC	1 cut(s)	28
CviAII	CATG	4 cut(s)	100, 185, 197, 436
CviQI	GTAC	1 cut(s)	28
DpnI	GATC	1 cut(s)	633
DpnII	GATC	1 cut(s)	631
DraIII	CACNNNGTG	1 cut(s)	791
EciI	GGCGGA	2 cut(s)	20, 632
Eco130I	CCWWGG	1 cut(s)	524
Eco24I	GRGCYC	1 cut(s)	478
Eco47I	GGWCC	2 cut(s)	58, 507
Eco57I	CTGAAG	2 cut(s)	393, 563
Eco91I	GGTNACC	1 cut(s)	313
EcoNI	CCTNNNNNAGG	1 cut(s)	375
EcoO109I	RGGNCCY	2 cut(s)	58, 323
EcoO65I	GGTNACC	1 cut(s)	313
EcoT14I	CCWWGG	1 cut(s)	524
EcoT22I	ATGCAT	1 cut(s)	682
EcoT38I	GRGCYC	1 cut(s)	478
ErhI	CCWWGG	1 cut(s)	524
FaeI	CATG	4 cut(s)	103, 188, 200, 439
FalI	AAGNNNNNCTT	4 cut(s)	369, 401, 410, 442
FaqI	GGGAC	1 cut(s)	71
FatI	CATG	4 cut(s)	99, 184, 196, 435
FauNDI	CATATG	1 cut(s)	271
FblI	GTMKAC	1 cut(s)	18
Fnu4HI	GCNGC	4 cut(s)	201, 699, 813, 816
FokI	GGATG	5 cut(s)	243, 483, 641, 683, 689
FriOI	GRGCYC	1 cut(s)	478
Fsp4HI	GCNGC	4 cut(s)	201, 699, 813, 816
FspBI	CTAG	3 cut(s)	725, 747, 771
GlaI	GCGC	3 cut(s)	24, 67, 91
GluI	GCNGC	4 cut(s)	201, 699, 813, 816
GsaI	CCCAGC	2 cut(s)	194, 297
GsuI	CTGGAG	2 cut(s)	174, 492
HaeIII	GGCC	3 cut(s)	195, 324, 522
HapII	CCGG	3 cut(s)	318, 345, 510
HgaI	GACGC	1 cut(s)	29
HhaI	GCGC	3 cut(s)	25, 68, 92
Hin1II	CATG	4 cut(s)	103, 188, 200, 439
Hin6I	GCGC	3 cut(s)	23, 66, 90
HinP1I	GCGC	3 cut(s)	23, 66, 90
HinfI	GANTC	4 cut(s)	356, 365, 584, 826
HpaII	CCGG	3 cut(s)	318, 345, 510
HphI	GGTGA	2 cut(s)	307, 835
Hpy166II	GTNNAC	2 cut(s)	19, 407
Hpy188I	TCNGA	6 cut(s)	261, 448, 543, 589, 689, 721
Hpy188III	TCNNGA	7 cut(s)	43, 56, 175, 371, 389, 471, 500
Hpy8I	GTNNAC	2 cut(s)	19, 407
Hpy99I	CGWCG	1 cut(s)	57
HpyAV	CCTTC	5 cut(s)	40, 346, 371, 375, 412
HpyCH4III	ACNGT	2 cut(s)	468, 717
HpyCH4IV	ACGT	1 cut(s)	651
HpyCH4V	TGCA	8 cut(s)	200, 305, 407, 665, 680, 698, 806, 812
HpyF10VI	GCNNNNNNNGC	3 cut(s)	519, 791, 812
HpySE526I	ACGT	1 cut(s)	651
Hsp92II	CATG	4 cut(s)	103, 188, 200, 439
HspAI	GCGC	3 cut(s)	23, 66, 90
Kzo9I	GATC	1 cut(s)	631
LmnI	GCTCC	4 cut(s)	97, 173, 473, 568
Lsp1109I	GCAGC	4 cut(s)	212, 710, 802, 824
LweI	GCATC	4 cut(s)	112, 382, 667, 710
MaeI	CTAG	3 cut(s)	725, 747, 771
MaeII	ACGT	1 cut(s)	651
MaeIII	GTNAC	2 cut(s)	313, 833
MalI	GATC	1 cut(s)	633
MboI	GATC	1 cut(s)	631
MboII	GAAGA	3 cut(s)	160, 386, 721
MhlI	GDGCHC	3 cut(s)	409, 478, 496
MluCI	AATT	3 cut(s)	219, 229, 553
MmeI	TCCRAC	1 cut(s)	102
MnlI	CCTC	9 cut(s)	71, 149, 232, 304, 314, 549, 583, 667, 750
Mph1103I	ATGCAT	1 cut(s)	682
MseI	TTAA	1 cut(s)	228
MslI	CAYNNNNRTG	1 cut(s)	855
MspA1I	CMGCKG	1 cut(s)	815
MspI	CCGG	3 cut(s)	318, 345, 510
MspR9I	CCNGG	1 cut(s)	345
MvnI	CGCG	2 cut(s)	23, 66
MwoI	GCNNNNNNNGC	3 cut(s)	519, 791, 812
NciI	CCSGG	1 cut(s)	345
NdeI	CATATG	1 cut(s)	271
NdeII	GATC	1 cut(s)	631
NlaIII	CATG	4 cut(s)	103, 188, 200, 439
NlaIV	GGNNCC	4 cut(s)	9, 59, 169, 475
NmuCI	GTSAC	1 cut(s)	313
NsiI	ATGCAT	1 cut(s)	682
PfeI	GAWTC	4 cut(s)	356, 365, 584, 826
PflMI	CCANNNNNTGG	1 cut(s)	484
PkrI	GCNGC	4 cut(s)	202, 700, 814, 817
PpuMI	RGGWCCY	1 cut(s)	58
PshAI	GACNNNNGTC	1 cut(s)	773
Psp5II	RGGWCCY	1 cut(s)	58
PspEI	GGTNACC	1 cut(s)	313
PspFI	CCCAGC	2 cut(s)	190, 293
PspN4I	GGNNCC	4 cut(s)	9, 59, 169, 475
PspPI	GGNCC	5 cut(s)	58, 193, 323, 507, 521
PspPPI	RGGWCCY	1 cut(s)	58
PstNI	CAGNNNCTG	1 cut(s)	31
PvuII	CAGCTG	1 cut(s)	815
RsaI	GTAC	1 cut(s)	29
RsaNI	GTAC	1 cut(s)	28
RseI	CAYNNNNRTG	1 cut(s)	855
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	4 cut(s)	201, 699, 813, 816
Sau3AI	GATC	1 cut(s)	631
Sau96I	GGNCC	5 cut(s)	58, 193, 323, 507, 521
ScrFI	CCNGG	1 cut(s)	345
SduI	GDGCHC	3 cut(s)	409, 478, 496
SfaNI	GCATC	4 cut(s)	112, 382, 667, 710
SinI	GGWCC	2 cut(s)	58, 507
SmiMI	CAYNNNNRTG	1 cut(s)	855
SmlI	CTYRAG	1 cut(s)	752
SmoI	CTYRAG	1 cut(s)	752
SpeI	ACTAGT	1 cut(s)	770
Sse9I	AATT	3 cut(s)	219, 229, 553
SsiI	CCGC	6 cut(s)	5, 64, 82, 433, 643, 818
SspMI	CTAG	3 cut(s)	725, 747, 771
StyD4I	CCNGG	1 cut(s)	343
StyI	CCWWGG	1 cut(s)	524
TaaI	ACNGT	2 cut(s)	468, 717
TaiI	ACGT	1 cut(s)	654
TaqI	TCGA	2 cut(s)	42, 309
TasI	AATT	3 cut(s)	219, 229, 553
TfiI	GAWTC	4 cut(s)	356, 365, 584, 826
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TscAI	CASTG	1 cut(s)	471
TseFI	GTSAC	1 cut(s)	313
TseI	GCWGC	4 cut(s)	200, 698, 812, 815
Tsp45I	GTSAC	1 cut(s)	313
TspDTI	ATGAA	3 cut(s)	348, 546, 839
TspRI	CASTG	1 cut(s)	471
Van91I	CCANNNNNTGG	1 cut(s)	484
VneI	GTGCAC	1 cut(s)	405
VpaK11BI	GGWCC	2 cut(s)	58, 507
XagI	CCTNNNNNAGG	1 cut(s)	375
XmiI	GTMKAC	1 cut(s)	18
XspI	CTAG	3 cut(s)	725, 747, 771
Zsp2I	ATGCAT	1 cut(s)	682

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.