Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0003986

Physical Location & Seq

Genomic Coordinates Forward (+)

11612071 .. 11613927

Gene Structure 1857 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG130100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGCGGAACCTGTCGTAGACGCGCAGTACCTGAAAGAAATCGAGAAGGCTCGTCGGGACCTCCGCGCTCTCATCTCCAACCGCAACTGCGCTCCCATCATGCTTCAGGAAGTGAAAGCCAAACATCCGAAAATCACATATGCTGACCTTTACCAGCTTGCTGGGGTTGTTGCAGTCGAGGTCACCGGAGGCCCTACTATTGAGTTTGTTCCCGGTAGGAAGGATTCATTGGAATCTCCTGAAGAAGGAAGGCTTCCAGATGCCAAAAAAGGTGCACCACATTTGAAGGACATCTTTTACCGCATGGGTCTGTCTGATAAGGACATTGTGGCACTGTCTGGAGCCCATACATTGGGTAGAGCACATCCAGAAAGGTCCGGCTTTGATGGCCCTTGGACAAAAGAGCCTCTGAAGTTTGACAATTCATACTTTGTGGAGCTACTGAAAGGAGAATCAGAGGGGCTGTTGAAACTACCCACAGACAAGGCTTTATTGGATGATCCTGCGTTCCGCCCCTACGTTGAACTTTATGCAAAGGATGAGGATGCATTTTTCAGAGACTATGCAGCATCACAGAAGAAACTGTCAGAGCTAGGCTTCACTCCACCTCCATCTAGTCTCAAGGAAGCTGAAAAGACTAGTGTCGTAGTGGCACAAAGTGCTGTGGGAGTTGCAGTTGCAGCTGCGGTGGTGATTCTGGGTTACTTATACGAAGTTCATAAAAGTGTCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004130 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0005778 GO:0005911 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009636 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0016020 GO:0016209 GO:0016491 GO:0016684 GO:0016688 GO:0016999 GO:0017001 GO:0017144 GO:0030054 GO:0031090 GO:0031903 GO:0031967 GO:0031975 GO:0033554 GO:0034599 GO:0042221 GO:0042579 GO:0042737 GO:0042743 GO:0042744 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051186 GO:0051187 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0072593 GO:0097237 GO:0098588 GO:0098754 GO:0098805 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko00480 map00053 map00480

Pfam Domains

Protein Families

peroxidase

Protein Analysis

244

Amino Acids

26.81

Weight (kDa)

6.02

Isoelectric Point (pI)

40.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	34 - 180	3.7e-35	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35000
fragaria_vesca	FvH4_1g11491 FvH4_2g01310
malus_domestica	MD05G1120800.v1.1 MD15G1242900.v1.1
prunus_persica	Prupe.7G171200_v2.0.a1 Prupe.8G164400_v2.0.a1 Prupe.8G164400_v2.0.a1
pyrus_communis	pycom05g11470 pycom10g10600
rosa_chinensis	RchiOBHm_Chr2g0099101 RchiOBHm_Chr6g0252051 RchiOBHm_Chr6g0252201
rosa_laevigata	RLG00000015403 RLG00000016848
rosa_multiflora	Rmu_ssc0000165.1_g000002
rosa_roxburghii	Rroxscaffold_2G00143440 Rroxscaffold_7G00216250
rosa_rugosa	Rorug02G0076700 Rorug05G0506000.1
rosa_samantha	Rh2AG125800 Rh2BG129100 Rh2CG130100 Rh2DG130500 Rh6AG019900 Rh6BG015300 Rh6CG011600 Rh6CG012300 Rh6DG013000 Rh6DG013600
rosa_wichuraiana	Rw2G009690 Rw6G000090 Rw6G001630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	352
AccI	GTMKAC	1 cut(s)	18
AccII	CGCG	2 cut(s)	23, 66
AciI	CCGC	6 cut(s)	5, 64, 82, 301, 511, 686
AclWI	GGATC	1 cut(s)	494
AcuI	CTGAAG	3 cut(s)	89, 261, 431
AdeI	CACNNNGTG	1 cut(s)	659
AfaI	GTAC	1 cut(s)	29
AfiI	CCNNNNNNNGG	2 cut(s)	245, 352
AgsI	TTSAA	3 cut(s)	286, 469, 524
AhlI	ACTAGT	1 cut(s)	638
AjuI	GAANNNNNNNTTGG	2 cut(s)	212, 244
AluBI	AGCT	5 cut(s)	157, 439, 592, 629, 683
AluI	AGCT	5 cut(s)	157, 439, 592, 629, 683
Alw21I	GWGCWC	2 cut(s)	277, 364
Alw26I	GTCTC	2 cut(s)	552, 623
Alw44I	GTGCAC	1 cut(s)	273
AlwI	GGATC	1 cut(s)	494
AlwNI	CAGNNNCTG	1 cut(s)	31
AoxI	GGCC	2 cut(s)	190, 388
ApaLI	GTGCAC	1 cut(s)	273
ApeKI	GCWGC	3 cut(s)	566, 680, 683
AspLEI	GCGC	3 cut(s)	25, 68, 92
AspS9I	GGNCC	4 cut(s)	58, 191, 375, 389
AsuC2I	CCSGG	1 cut(s)	213
AsuHPI	GGTGA	2 cut(s)	175, 703
AvaII	GGWCC	2 cut(s)	58, 375
BaeGI	GKGCMC	1 cut(s)	277
BanII	GRGCYC	1 cut(s)	346
Bbv12I	GWGCWC	2 cut(s)	277, 364
BbvI	GCAGC	3 cut(s)	578, 670, 692
BccI	CCATC	3 cut(s)	104, 380, 619
BcnI	CCSGG	1 cut(s)	213
BcoDI	GTCTC	2 cut(s)	552, 623
BcuI	ACTAGT	1 cut(s)	638
BfaI	CTAG	3 cut(s)	593, 615, 639
BisI	GCNGC	3 cut(s)	567, 681, 684
BlsI	GCNGC	3 cut(s)	568, 682, 685
Bme1390I	CCNGG	1 cut(s)	213
Bme18I	GGWCC	2 cut(s)	58, 375
BmgT120I	GGNCC	4 cut(s)	58, 191, 375, 389
BmiI	GGNNCC	3 cut(s)	9, 59, 343
BmrFI	CCNGG	1 cut(s)	213
BmsI	GCATC	3 cut(s)	250, 535, 578
BoxI	GACNNNNGTC	1 cut(s)	641
BpmI	CTGGAG	1 cut(s)	360
BpuEI	CTTGAG	1 cut(s)	605
BpuMI	CCSGG	1 cut(s)	213
BsaJI	CCNNGG	1 cut(s)	392
BsaWI	WCCGGW	1 cut(s)	185
BsaXI	ACNNNNNCTCC	4 cut(s)	592, 622, 660, 690
Bsc4I	CCNNNNNNNGG	2 cut(s)	245, 352
BseDI	CCNNGG	1 cut(s)	392
BseGI	GGATG	5 cut(s)	124, 364, 502, 544, 550
BseLI	CCNNNNNNNGG	2 cut(s)	245, 352
BseSI	GKGCMC	1 cut(s)	277
BseXI	GCAGC	3 cut(s)	578, 670, 692
BseYI	CCCAGC	1 cut(s)	161
Bsh1236I	CGCG	2 cut(s)	23, 66
BshFI	GGCC	2 cut(s)	192, 390
BsiHKAI	GWGCWC	2 cut(s)	277, 364
BsiSI	CCGG	3 cut(s)	186, 213, 378
BslFI	GGGAC	1 cut(s)	71
BslI	CCNNNNNNNGG	2 cut(s)	245, 352
BsmAI	GTCTC	2 cut(s)	552, 623
BsmFI	GGGAC	1 cut(s)	71
BsnI	GGCC	2 cut(s)	192, 390
Bsp1286I	GDGCHC	3 cut(s)	277, 346, 364
Bsp143I	GATC	1 cut(s)	499
BspACI	CCGC	6 cut(s)	5, 64, 82, 301, 511, 686
BspANI	GGCC	2 cut(s)	192, 390
BspFNI	CGCG	2 cut(s)	23, 66
BspLI	GGNNCC	3 cut(s)	9, 59, 343
BspPI	GGATC	1 cut(s)	494
BssECI	CCNNGG	1 cut(s)	392
BssMI	GATC	1 cut(s)	499
BssT1I	CCWWGG	1 cut(s)	392
Bst4CI	ACNGT	2 cut(s)	336, 585
BstAPI	GCANNNNNTGC	1 cut(s)	659
BstC8I	GCNNGC	1 cut(s)	159
BstEII	GGTNACC	1 cut(s)	181
BstENI	CCTNNNNNAGG	1 cut(s)	243
BstF5I	GGATG	5 cut(s)	124, 364, 502, 544, 550
BstFNI	CGCG	2 cut(s)	23, 66
BstHHI	GCGC	3 cut(s)	25, 68, 92
BstKTI	GATC	1 cut(s)	502
BstMAI	GTCTC	2 cut(s)	552, 623
BstMBI	GATC	1 cut(s)	499
BstMWI	GCNNNNNNNGC	3 cut(s)	387, 659, 680
BstPAI	GACNNNNGTC	1 cut(s)	641
BstPI	GGTNACC	1 cut(s)	181
BstSCI	CCNGG	1 cut(s)	211
BstSLI	GKGCMC	1 cut(s)	277
BstUI	CGCG	2 cut(s)	23, 66
BstV1I	GCAGC	3 cut(s)	578, 670, 692
BstXI	CCANNNNNNTGG	1 cut(s)	161
BsuRI	GGCC	2 cut(s)	192, 390
BtsCI	GGATG	5 cut(s)	124, 364, 502, 544, 550
BtsIMutI	CAGTG	1 cut(s)	332
Cac8I	GCNNGC	1 cut(s)	159
CaiI	CAGNNNCTG	1 cut(s)	31
CfoI	GCGC	3 cut(s)	25, 68, 92
Cfr13I	GGNCC	4 cut(s)	58, 191, 375, 389
CseI	GACGC	1 cut(s)	29
Csp6I	GTAC	1 cut(s)	28
CviAII	CATG	2 cut(s)	100, 304
CviQI	GTAC	1 cut(s)	28
DpnI	GATC	1 cut(s)	501
DpnII	GATC	1 cut(s)	499
DraIII	CACNNNGTG	1 cut(s)	659
EciI	GGCGGA	2 cut(s)	20, 500
Eco130I	CCWWGG	1 cut(s)	392
Eco24I	GRGCYC	1 cut(s)	346
Eco47I	GGWCC	2 cut(s)	58, 375
Eco57I	CTGAAG	3 cut(s)	89, 261, 431
Eco91I	GGTNACC	1 cut(s)	181
EcoNI	CCTNNNNNAGG	1 cut(s)	243
EcoO109I	RGGNCCY	2 cut(s)	58, 191
EcoO65I	GGTNACC	1 cut(s)	181
EcoT14I	CCWWGG	1 cut(s)	392
EcoT22I	ATGCAT	1 cut(s)	550
EcoT38I	GRGCYC	1 cut(s)	346
ErhI	CCWWGG	1 cut(s)	392
FaeI	CATG	2 cut(s)	103, 307
FalI	AAGNNNNNCTT	4 cut(s)	237, 269, 278, 310
FaqI	GGGAC	1 cut(s)	71
FatI	CATG	2 cut(s)	99, 303
FauNDI	CATATG	1 cut(s)	139
FblI	GTMKAC	1 cut(s)	18
Fnu4HI	GCNGC	3 cut(s)	567, 681, 684
FokI	GGATG	5 cut(s)	111, 351, 509, 551, 557
FriOI	GRGCYC	1 cut(s)	346
Fsp4HI	GCNGC	3 cut(s)	567, 681, 684
FspBI	CTAG	3 cut(s)	593, 615, 639
GlaI	GCGC	3 cut(s)	24, 67, 91
GluI	GCNGC	3 cut(s)	567, 681, 684
GsaI	CCCAGC	1 cut(s)	165
GsuI	CTGGAG	1 cut(s)	360
HaeIII	GGCC	2 cut(s)	192, 390
HapII	CCGG	3 cut(s)	186, 213, 378
HgaI	GACGC	1 cut(s)	29
HhaI	GCGC	3 cut(s)	25, 68, 92
Hin1II	CATG	2 cut(s)	103, 307
Hin6I	GCGC	3 cut(s)	23, 66, 90
HinP1I	GCGC	3 cut(s)	23, 66, 90
HinfI	GANTC	4 cut(s)	224, 233, 452, 694
HpaII	CCGG	3 cut(s)	186, 213, 378
HphI	GGTGA	2 cut(s)	175, 703
Hpy166II	GTNNAC	2 cut(s)	19, 275
Hpy188I	TCNGA	6 cut(s)	129, 316, 411, 457, 557, 589
Hpy188III	TCNNGA	7 cut(s)	43, 56, 107, 239, 257, 339, 368
Hpy8I	GTNNAC	2 cut(s)	19, 275
Hpy99I	CGWCG	1 cut(s)	57
HpyAV	CCTTC	5 cut(s)	40, 214, 239, 243, 280
HpyCH4III	ACNGT	2 cut(s)	336, 585
HpyCH4IV	ACGT	1 cut(s)	519
HpyCH4V	TGCA	7 cut(s)	173, 275, 533, 548, 566, 674, 680
HpyF10VI	GCNNNNNNNGC	3 cut(s)	387, 659, 680
HpySE526I	ACGT	1 cut(s)	519
Hsp92II	CATG	2 cut(s)	103, 307
HspAI	GCGC	3 cut(s)	23, 66, 90
Kzo9I	GATC	1 cut(s)	499
LmnI	GCTCC	3 cut(s)	97, 341, 436
Lsp1109I	GCAGC	3 cut(s)	578, 670, 692
LweI	GCATC	3 cut(s)	250, 535, 578
MaeI	CTAG	3 cut(s)	593, 615, 639
MaeII	ACGT	1 cut(s)	519
MaeIII	GTNAC	2 cut(s)	181, 701
MalI	GATC	1 cut(s)	501
MboI	GATC	1 cut(s)	499
MboII	GAAGA	2 cut(s)	254, 589
MhlI	GDGCHC	3 cut(s)	277, 346, 364
MluCI	AATT	1 cut(s)	421
MmeI	TCCRAC	1 cut(s)	102
MnlI	CCTC	7 cut(s)	71, 172, 182, 417, 451, 535, 618
Mph1103I	ATGCAT	1 cut(s)	550
MslI	CAYNNNNRTG	1 cut(s)	723
MspA1I	CMGCKG	1 cut(s)	683
MspI	CCGG	3 cut(s)	186, 213, 378
MspR9I	CCNGG	1 cut(s)	213
MvnI	CGCG	2 cut(s)	23, 66
MwoI	GCNNNNNNNGC	3 cut(s)	387, 659, 680
NciI	CCSGG	1 cut(s)	213
NdeI	CATATG	1 cut(s)	139
NdeII	GATC	1 cut(s)	499
NlaIII	CATG	2 cut(s)	103, 307
NlaIV	GGNNCC	3 cut(s)	9, 59, 343
NmuCI	GTSAC	1 cut(s)	181
NsiI	ATGCAT	1 cut(s)	550
PfeI	GAWTC	4 cut(s)	224, 233, 452, 694
PflMI	CCANNNNNTGG	1 cut(s)	352
PkrI	GCNGC	3 cut(s)	568, 682, 685
PpuMI	RGGWCCY	1 cut(s)	58
PshAI	GACNNNNGTC	1 cut(s)	641
Psp5II	RGGWCCY	1 cut(s)	58
PspEI	GGTNACC	1 cut(s)	181
PspFI	CCCAGC	1 cut(s)	161
PspN4I	GGNNCC	3 cut(s)	9, 59, 343
PspPI	GGNCC	4 cut(s)	58, 191, 375, 389
PspPPI	RGGWCCY	1 cut(s)	58
PstNI	CAGNNNCTG	1 cut(s)	31
PvuII	CAGCTG	1 cut(s)	683
RsaI	GTAC	1 cut(s)	29
RsaNI	GTAC	1 cut(s)	28
RseI	CAYNNNNRTG	1 cut(s)	723
SatI	GCNGC	3 cut(s)	567, 681, 684
Sau3AI	GATC	1 cut(s)	499
Sau96I	GGNCC	4 cut(s)	58, 191, 375, 389
ScrFI	CCNGG	1 cut(s)	213
SduI	GDGCHC	3 cut(s)	277, 346, 364
SfaNI	GCATC	3 cut(s)	250, 535, 578
SinI	GGWCC	2 cut(s)	58, 375
SmiMI	CAYNNNNRTG	1 cut(s)	723
SmlI	CTYRAG	1 cut(s)	620
SmoI	CTYRAG	1 cut(s)	620
SpeI	ACTAGT	1 cut(s)	638
Sse9I	AATT	1 cut(s)	421
SsiI	CCGC	6 cut(s)	5, 64, 82, 301, 511, 686
SspMI	CTAG	3 cut(s)	593, 615, 639
StyD4I	CCNGG	1 cut(s)	211
StyI	CCWWGG	1 cut(s)	392
TaaI	ACNGT	2 cut(s)	336, 585
TaiI	ACGT	1 cut(s)	522
TaqI	TCGA	2 cut(s)	42, 177
TasI	AATT	1 cut(s)	421
TfiI	GAWTC	4 cut(s)	224, 233, 452, 694
TscAI	CASTG	1 cut(s)	339
TseFI	GTSAC	1 cut(s)	181
TseI	GCWGC	3 cut(s)	566, 680, 683
Tsp45I	GTSAC	1 cut(s)	181
TspDTI	ATGAA	3 cut(s)	216, 414, 707
TspRI	CASTG	1 cut(s)	339
Van91I	CCANNNNNTGG	1 cut(s)	352
VneI	GTGCAC	1 cut(s)	273
VpaK11BI	GGWCC	2 cut(s)	58, 375
XagI	CCTNNNNNAGG	1 cut(s)	243
XmiI	GTMKAC	1 cut(s)	18
XspI	CTAG	3 cut(s)	593, 615, 639
Zsp2I	ATGCAT	1 cut(s)	550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.