Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0003986

Physical Location & Seq

Genomic Coordinates Reverse (-)

1264679 .. 1266879

Gene Structure 2201 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG013000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGTAGCAGGCTGTGGAGTGATATTTACACTATCACTTACCAGAGGGCAGACAGTCAAGCTGAGAGGGCATCTGTTGGAGGGGCAAGTTCAACGCCTCCGTCGAAATCTAGCAAATCAGGTGCTTCCAATTCTAATTCCTATTCCCAATTGCATCGGATGTCTCTTCTTGATAGCATTTTGCCGGGAGAACTTCCTTGTGATTTGGAAAAATCTAATCCTACTTATAATATACTGGCACTGCTGGCGTTTGGAATCCAATTATAGGTGCACACATCTGAGGGACATCTTCTATCGAATGGGGTTATCTGACAAGGATGTTATTGCACTCTCTGGGGCTCATACGCTGGGAACAGCACATCCAGAGAGATCTGGTTTTGATGGTCCTTGGACTCAGGAACCCCTGAAGTTTGATAACTCATACTTCATAGAATTGCTGAAAGGGGAATCAGAGGGATTGCTGAAACTCCCATCAGATACAGCTCTGTTAGATGACGCTGAGCTCTGTAAATATGTTGAGCTATATGCAAAGGATGAGGAGGCCTTTTTCAAAGATTATGCTGAATCACATAAGAAACTCTCTGAGCTTGGGTTTACTTCAAGTTCCTCCAAGATTATTGCAAAGTATAGCACCATACTGGCAGAAGGTGCAGTTGGAGTTGCAGTTTGTGCTGCTATTGTGATCCTGGGCTACTTATATGAAGTTCGCAAAAGAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004130 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0005778 GO:0005911 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009636 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0016020 GO:0016209 GO:0016491 GO:0016684 GO:0016688 GO:0016999 GO:0017001 GO:0017144 GO:0030054 GO:0031090 GO:0031903 GO:0031967 GO:0031975 GO:0033554 GO:0034599 GO:0042221 GO:0042579 GO:0042737 GO:0042743 GO:0042744 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051186 GO:0051187 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0072593 GO:0097237 GO:0098588 GO:0098754 GO:0098805 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko00480 map00053 map00480

Pfam Domains

Protein Families

peroxidase

Protein Analysis

239

Amino Acids

27.0

Weight (kDa)

7.57

Isoelectric Point (pI)

31.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	89 - 178	6.1e-16	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35000
fragaria_vesca	FvH4_1g11491 FvH4_2g01310
malus_domestica	MD05G1120800.v1.1 MD15G1242900.v1.1
prunus_persica	Prupe.7G171200_v2.0.a1 Prupe.8G164400_v2.0.a1 Prupe.8G164400_v2.0.a1
pyrus_communis	pycom05g11470 pycom10g10600
rosa_chinensis	RchiOBHm_Chr2g0099101 RchiOBHm_Chr6g0252051 RchiOBHm_Chr6g0252201
rosa_laevigata	RLG00000015403 RLG00000016848
rosa_multiflora	Rmu_ssc0000165.1_g000002
rosa_roxburghii	Rroxscaffold_2G00143440 Rroxscaffold_7G00216250
rosa_rugosa	Rorug02G0076700 Rorug05G0506000.1
rosa_samantha	Rh2AG125800 Rh2BG129100 Rh2CG130100 Rh2DG130500 Rh6AG019900 Rh6BG015300 Rh6CG011600 Rh6CG012300 Rh6DG013000 Rh6DG013600
rosa_wichuraiana	Rw2G009690 Rw6G000090 Rw6G001630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	227
AclWI	GGATC	1 cut(s)	676
AcuI	CTGAAG	1 cut(s)	425
AfiI	CCNNNNNNNGG	1 cut(s)	264
AgsI	TTSAA	3 cut(s)	92, 550, 600
AjnI	CCWGG	1 cut(s)	684
AjuI	GAANNNNNNNTTGG	2 cut(s)	636, 668
AloI	GAACNNNNNNTCC	2 cut(s)	343, 375
AluBI	AGCT	5 cut(s)	61, 482, 502, 520, 586
AluI	AGCT	5 cut(s)	61, 482, 502, 520, 586
Alw21I	GWGCWC	2 cut(s)	272, 504
Alw26I	GTCTC	1 cut(s)	167
Alw44I	GTGCAC	1 cut(s)	268
AlwI	GGATC	1 cut(s)	676
AoxI	GGCC	1 cut(s)	540
ApaLI	GTGCAC	1 cut(s)	268
ApeKI	GCWGC	1 cut(s)	671
AspS9I	GGNCC	1 cut(s)	383
AsuC2I	CCSGG	1 cut(s)	185
AvaII	GGWCC	1 cut(s)	383
BaeGI	GKGCMC	1 cut(s)	272
BanII	GRGCYC	2 cut(s)	340, 504
Bbv12I	GWGCWC	2 cut(s)	272, 504
BbvI	GCAGC	1 cut(s)	658
BccI	CCATC	2 cut(s)	374, 478
BciT130I	CCWGG	1 cut(s)	686
BcnI	CCSGG	1 cut(s)	185
BcoDI	GTCTC	1 cut(s)	167
BfaI	CTAG	1 cut(s)	110
BglII	AGATCT	1 cut(s)	368
BisI	GCNGC	1 cut(s)	672
BlpI	GCTNAGC	1 cut(s)	498
BlsI	GCNGC	1 cut(s)	673
Bme1390I	CCNGG	2 cut(s)	185, 686
Bme18I	GGWCC	1 cut(s)	383
BmgT120I	GGNCC	1 cut(s)	383
BmiI	GGNNCC	1 cut(s)	399
BmrFI	CCNGG	2 cut(s)	185, 686
BmsI	GCATC	2 cut(s)	79, 162
Bpu1102I	GCTNAGC	1 cut(s)	498
BpuMI	CCSGG	1 cut(s)	185
BsaJI	CCNNGG	2 cut(s)	386, 685
BsaXI	ACNNNNNCTCC	2 cut(s)	648, 678
Bsc4I	CCNNNNNNNGG	1 cut(s)	264
Bse1I	ACTGG	2 cut(s)	239, 642
BseBI	CCWGG	1 cut(s)	686
BseDI	CCNNGG	2 cut(s)	386, 685
BseGI	GGATG	4 cut(s)	164, 322, 358, 538
BseLI	CCNNNNNNNGG	1 cut(s)	264
BseMII	CTCAG	5 cut(s)	53, 269, 407, 489, 573
BseNI	ACTGG	2 cut(s)	239, 642
BseRI	GAGGAG	1 cut(s)	551
BseSI	GKGCMC	1 cut(s)	272
BseXI	GCAGC	1 cut(s)	658
BseYI	CCCAGC	1 cut(s)	346
BsgI	GTGCAG	1 cut(s)	669
BshFI	GGCC	1 cut(s)	542
BsiHKAI	GWGCWC	2 cut(s)	272, 504
BsiSI	CCGG	1 cut(s)	184
BslFI	GGGAC	1 cut(s)	296
BslI	CCNNNNNNNGG	1 cut(s)	264
BsmAI	GTCTC	1 cut(s)	167
BsmFI	GGGAC	1 cut(s)	296
BsnI	GGCC	1 cut(s)	542
Bsp1286I	GDGCHC	3 cut(s)	272, 340, 504
Bsp143I	GATC	2 cut(s)	368, 681
Bsp1720I	GCTNAGC	1 cut(s)	498
BspANI	GGCC	1 cut(s)	542
BspCNI	CTCAG	5 cut(s)	54, 270, 406, 490, 574
BspLI	GGNNCC	1 cut(s)	399
BspPI	GGATC	1 cut(s)	676
BsrI	ACTGG	2 cut(s)	239, 642
BssECI	CCNNGG	2 cut(s)	386, 685
BssMI	GATC	2 cut(s)	368, 681
BssT1I	CCWWGG	1 cut(s)	386
Bst2UI	CCWGG	1 cut(s)	686
Bst4CI	ACNGT	1 cut(s)	55
Bst6I	CTCTTC	1 cut(s)	170
BstAPI	GCANNNNNTGC	2 cut(s)	647, 668
BstC8I	GCNNGC	2 cut(s)	10, 245
BstDEI	CTNAG	5 cut(s)	62, 278, 393, 498, 582
BstF5I	GGATG	4 cut(s)	164, 322, 358, 538
BstKTI	GATC	2 cut(s)	371, 684
BstMAI	GTCTC	1 cut(s)	167
BstMBI	GATC	2 cut(s)	368, 681
BstMWI	GCNNNNNNNGC	4 cut(s)	67, 244, 647, 668
BstNI	CCWGG	1 cut(s)	686
BstSCI	CCNGG	2 cut(s)	183, 684
BstSLI	GKGCMC	1 cut(s)	272
BstV1I	GCAGC	1 cut(s)	658
BstX2I	RGATCY	1 cut(s)	368
BstYI	RGATCY	1 cut(s)	368
BsuRI	GGCC	1 cut(s)	542
BtsCI	GGATG	4 cut(s)	164, 322, 358, 538
BtsI	GCAGTG	1 cut(s)	238
BtsIMutI	CAGTG	1 cut(s)	238
Cac8I	GCNNGC	2 cut(s)	10, 245
Cfr13I	GGNCC	1 cut(s)	383
CseI	GACGC	1 cut(s)	503
CviJI	RGCY	9 cut(s)	12, 61, 338, 482, 502, 520, 542, 586, 690
CviKI_1	RGCY	9 cut(s)	12, 61, 338, 482, 502, 520, 542, 586, 690
DdeI	CTNAG	5 cut(s)	62, 278, 393, 498, 582
DpnI	GATC	2 cut(s)	370, 683
DpnII	GATC	2 cut(s)	368, 681
Eam1104I	CTCTTC	1 cut(s)	170
EarI	CTCTTC	1 cut(s)	170
Ecl136II	GAGCTC	1 cut(s)	502
Eco130I	CCWWGG	1 cut(s)	386
Eco147I	AGGCCT	1 cut(s)	542
Eco24I	GRGCYC	2 cut(s)	340, 504
Eco47I	GGWCC	1 cut(s)	383
Eco53kI	GAGCTC	1 cut(s)	502
Eco57I	CTGAAG	1 cut(s)	425
EcoICRI	GAGCTC	1 cut(s)	502
EcoRII	CCWGG	1 cut(s)	684
EcoT14I	CCWWGG	1 cut(s)	386
EcoT38I	GRGCYC	2 cut(s)	340, 504
ErhI	CCWWGG	1 cut(s)	386
FaqI	GGGAC	1 cut(s)	296
Fnu4HI	GCNGC	1 cut(s)	672
FokI	GGATG	4 cut(s)	171, 329, 345, 545
FriOI	GRGCYC	2 cut(s)	340, 504
Fsp4HI	GCNGC	1 cut(s)	672
FspBI	CTAG	1 cut(s)	110
GluI	GCNGC	1 cut(s)	672
GsaI	CCCAGC	1 cut(s)	350
HaeIII	GGCC	1 cut(s)	542
HapII	CCGG	1 cut(s)	184
HgaI	GACGC	1 cut(s)	503
HinfI	GANTC	4 cut(s)	254, 391, 446, 563
HpaII	CCGG	1 cut(s)	184
Hpy166II	GTNNAC	2 cut(s)	270, 594
Hpy188I	TCNGA	6 cut(s)	158, 279, 310, 451, 475, 583
Hpy188III	TCNNGA	3 cut(s)	169, 362, 395
Hpy8I	GTNNAC	2 cut(s)	270, 594
Hpy99I	CGWCG	1 cut(s)	105
HpyAV	CCTTC	1 cut(s)	638
HpyCH4III	ACNGT	1 cut(s)	55
HpyCH4V	TGCA	7 cut(s)	153, 270, 326, 527, 620, 650, 662
HpyF10VI	GCNNNNNNNGC	4 cut(s)	67, 244, 647, 668
HpyF3I	CTNAG	5 cut(s)	62, 278, 393, 498, 582
Kzo9I	GATC	2 cut(s)	368, 681
Lsp1109I	GCAGC	1 cut(s)	658
LweI	GCATC	2 cut(s)	79, 162
MaeI	CTAG	1 cut(s)	110
MalI	GATC	2 cut(s)	370, 683
MboI	GATC	2 cut(s)	368, 681
MboII	GAAGA	2 cut(s)	157, 280
MfeI	CAATTG	1 cut(s)	148
MflI	RGATCY	1 cut(s)	368
MhlI	GDGCHC	3 cut(s)	272, 340, 504
MluCI	AATT	5 cut(s)	129, 135, 148, 259, 431
MlyI	GAGTC	1 cut(s)	385
MmeI	TCCRAC	2 cut(s)	57, 634
MnlI	CCTC	9 cut(s)	38, 59, 73, 107, 273, 445, 529, 532, 616
MspI	CCGG	1 cut(s)	184
MspR9I	CCNGG	2 cut(s)	185, 686
MunI	CAATTG	1 cut(s)	148
MvaI	CCWGG	1 cut(s)	686
MwoI	GCNNNNNNNGC	4 cut(s)	67, 244, 647, 668
NciI	CCSGG	1 cut(s)	185
NdeII	GATC	2 cut(s)	368, 681
NlaIV	GGNNCC	1 cut(s)	399
PceI	AGGCCT	1 cut(s)	542
PcsI	WCGNNNNNNNCGW	1 cut(s)	100
PfeI	GAWTC	3 cut(s)	254, 446, 563
PkrI	GCNGC	1 cut(s)	673
PleI	GAGTC	1 cut(s)	385
PpsI	GAGTC	1 cut(s)	385
PsiI	TTATAA	1 cut(s)	227
Psp124BI	GAGCTC	1 cut(s)	504
Psp6I	CCWGG	1 cut(s)	684
PspFI	CCCAGC	1 cut(s)	346
PspGI	CCWGG	1 cut(s)	684
PspN4I	GGNNCC	1 cut(s)	399
PspPI	GGNCC	1 cut(s)	383
PsuI	RGATCY	1 cut(s)	368
SacI	GAGCTC	1 cut(s)	504
SatI	GCNGC	1 cut(s)	672
Sau3AI	GATC	2 cut(s)	368, 681
Sau96I	GGNCC	1 cut(s)	383
SchI	GAGTC	1 cut(s)	385
ScrFI	CCNGG	2 cut(s)	185, 686
SduI	GDGCHC	3 cut(s)	272, 340, 504
SetI	ASST	8 cut(s)	63, 123, 269, 484, 504, 522, 588, 649
SfaNI	GCATC	2 cut(s)	79, 162
SinI	GGWCC	1 cut(s)	383
Sse9I	AATT	5 cut(s)	129, 135, 148, 259, 431
SseBI	AGGCCT	1 cut(s)	542
SspMI	CTAG	1 cut(s)	110
SstI	GAGCTC	1 cut(s)	504
StuI	AGGCCT	1 cut(s)	542
StyD4I	CCNGG	2 cut(s)	183, 684
StyI	CCWWGG	1 cut(s)	386
TaaI	ACNGT	1 cut(s)	55
TaqI	TCGA	2 cut(s)	103, 295
TasI	AATT	5 cut(s)	129, 135, 148, 259, 431
TfiI	GAWTC	3 cut(s)	254, 446, 563
TscAI	CASTG	1 cut(s)	245
TseI	GCWGC	1 cut(s)	671
TspDTI	ATGAA	2 cut(s)	415, 714
TspGWI	ACGGA	1 cut(s)	89
TspRI	CASTG	1 cut(s)	245
VneI	GTGCAC	1 cut(s)	268
VpaK11BI	GGWCC	1 cut(s)	383
XspI	CTAG	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.