AT4G36960

RNA-binding protein Musashi homolog

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
17426918 .. 17429765
2848 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G36960.2

Sequence Viewer

Length: 1140 bp
ATGGAACGGAAGCTTGTGGTTTTGGGAATCCCGTGGGATATTGATTCCGATGGGCTTAAGGATTACATGTCAAAATTTGGAGACTTGGAGGATTGTATTGTCATGAAGGATCGATCAACTGGAAGATCTCGTGGATTTGGATATGTCACTTTTGCTTCAGCTGAAGATGCAAAGAATGCTTTGAAAGGTGAACACTTTTTAGGGAACAGGATCTTGGAAGTTAAAGTGGCTACACCAAAGGAAGAGATGAGACAGCCTGCAAAAAAAGTGACGAGGATCTTCGTTGCTCGAATCCCTTCATCAGTCTCTGAATCAGATTTCCGAAGCCATTTTGAGAGGTATGGGGAAATAACAGACTTATACATGCCTAAGGACTACAACTCGAAGCAGCACCGAGGAATAGGGTTTATCACATTCTCTAGTGCTGATTCAGTGGAGGATCTGATGGAGGACACTCATGATCTGGGAGGTACAACAGTTGCTGTTGATCGGGCAACACCAAAAGAGGATGATCATCCGCCTAGGCCACCGCCAGTGGCTAGAATGTCGCGCCCACCCGTGGCTATTGCAGGTGGATTTGGAGCTCCAGGTGGTTATGGAGCTTATGATGCTTACATTTCTGCAGCTACAAGATACGCAGCGCTTGGTGCCCCTACTTTGTATGATAATCCCGCCACGTTTTATGGAAGAGGGGAACCAACCACAAGGGGAATAGGAAACAAGATCTTTGTTGGACGGCTTCCTCAAGAAGCATCCGTTGATGATCTTCGCGATTATTTTGGGAGATTTGGCCATATTCAAGATGCTTATATTCCAAAGGACCCAAAGAGAAGTGGACATAGAGGTTTTGGATTTGTTACCTTTGCTGAAAATGGTGTTGCAGATCGTGTAGCCCGAAGATCTCATGAAATCTGTGGACAAGAGGTAGCAATAGATTCAGCAACGCCTCTTGATGAAGCTGGACCTAGCGCTGGCGCAAGTTCCATGTTAAGTTCTTCTCGTCCTGAATATTTTGGTGGCTATGGAGGTCCTATGCGCGCATTTGGTCGAATGTATGGAGGCATGAGCTTGGACGATTGGGGATATGGAATGCCAAACGCAAGACCATCAAGACCAGACCGGAGGTACCGGCCATACTAA

Protein Analysis

379

Amino Acids

41.69

Weight (kDa)

6.73

Isoelectric Point (pI)

47.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 5 - 69 2.3e-15 RNA recognition motif
RRM_1 PF00076 93 - 152 1.1e-11 RNA recognition motif
RRM_1 PF00076 242 - 299 1.5e-12 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 560
Acc36I ACCTGC 1 cut(s) 560
Acc65I GGTACC 1 cut(s) 1125
AccB1I GGYRCC 2 cut(s) 647, 1125
AccII CGCG 3 cut(s) 550, 771, 1038
AciI CCGC 3 cut(s) 518, 530, 672
AclWI GGATC 4 cut(s) 117, 218, 284, 447
AcoI YGGCCR 2 cut(s) 790, 1130
AcsI RAATTY 1 cut(s) 74
AcuI CTGAAG 2 cut(s) 141, 183
AfaI GTAC 2 cut(s) 472, 1127
AfeI AGCGCT 2 cut(s) 642, 970
AfiI CCNNNNNNNGG 2 cut(s) 559, 971
AflII CTTAAG 1 cut(s) 56
AflIII ACRYGT 1 cut(s) 66
AgsI TTSAA 2 cut(s) 184, 800
AjnI CCWGG 1 cut(s) 586
AjuI GAANNNNNNNTTGG 2 cut(s) 197, 229
AluBI AGCT 7 cut(s) 13, 161, 584, 602, 626, 959, 1068
AluI AGCT 7 cut(s) 13, 161, 584, 602, 626, 959, 1068
Alw21I GWGCWC 1 cut(s) 586
Alw26I GTCTC 3 cut(s) 75, 244, 310
AlwI GGATC 4 cut(s) 117, 218, 284, 447
AlwNI CAGNNNCTG 2 cut(s) 308, 482
Aor51HI AGCGCT 2 cut(s) 642, 970
AoxI GGCC 3 cut(s) 524, 790, 1130
ApeKI GCWGC 3 cut(s) 388, 623, 638
ApoI RAATTY 1 cut(s) 74
Asp700I GAANNNNTTC 1 cut(s) 295
Asp718I GGTACC 1 cut(s) 1125
AspA2I CCTAGG 1 cut(s) 521
AspLEI GCGC 6 cut(s) 552, 643, 971, 977, 1038, 1040
AspS9I GGNCC 3 cut(s) 820, 962, 1028
AsuHPI GGTGA 1 cut(s) 200
AvaII GGWCC 3 cut(s) 820, 962, 1028
AvrII CCTAGG 1 cut(s) 521
AxyI CCTNAGG 1 cut(s) 369
BaeGI GKGCMC 1 cut(s) 652
BaeI ACNNNNGTAYC 2 cut(s) 462, 495
BalI TGGCCA 1 cut(s) 792
BanI GGYRCC 2 cut(s) 647, 1125
BanII GRGCYC 1 cut(s) 586
BauI CACGAG 1 cut(s) 129
Bbv12I GWGCWC 1 cut(s) 586
BbvI GCAGC 3 cut(s) 400, 635, 650
BccI CCATC 3 cut(s) 44, 439, 1114
BceAI ACGGC 1 cut(s) 752
BciT130I CCWGG 1 cut(s) 588
BclI TGATCA 1 cut(s) 511
BcoDI GTCTC 3 cut(s) 75, 244, 310
BfaI CTAG 4 cut(s) 420, 522, 540, 966
BfmI CTRYAG 1 cut(s) 621
BfoI RGCGCY 2 cut(s) 644, 972
BfrI CTTAAG 1 cut(s) 56
BfuAI ACCTGC 1 cut(s) 560
BglII AGATCT 3 cut(s) 125, 723, 899
BisI GCNGC 3 cut(s) 389, 624, 639
BlnI CCTAGG 1 cut(s) 521
BlsI GCNGC 3 cut(s) 390, 625, 640
Bme1390I CCNGG 1 cut(s) 588
Bme18I GGWCC 3 cut(s) 820, 962, 1028
BmgT120I GGNCC 3 cut(s) 820, 962, 1028
BmiI GGNNCC 4 cut(s) 649, 696, 822, 1127
BmrFI CCNGG 1 cut(s) 588
BmsI GCATC 4 cut(s) 157, 598, 761, 793
BpmI CTGGAG 1 cut(s) 570
BpuEI CTTGAG 1 cut(s) 729
Bsa29I ATCGAT 1 cut(s) 112
BsaBI GATNNNNATC 1 cut(s) 513
BsaJI CCNNGG 4 cut(s) 32, 394, 521, 558
BsaWI WCCGGW 1 cut(s) 1119
Bsc4I CCNNNNNNNGG 2 cut(s) 559, 971
Bse118I RCCGGY 1 cut(s) 1128
Bse1I ACTGG 2 cut(s) 124, 533
Bse21I CCTNAGG 1 cut(s) 369
Bse8I GATNNNNATC 1 cut(s) 513
BseBI CCWGG 1 cut(s) 588
BseCI ATCGAT 1 cut(s) 112
BseDI CCNNGG 4 cut(s) 32, 394, 521, 558
BseGI GGATG 3 cut(s) 514, 514, 752
BseJI GATNNNNATC 1 cut(s) 513
BseLI CCNNNNNNNGG 2 cut(s) 559, 971
BseNI ACTGG 2 cut(s) 124, 533
BsePI GCGCGC 1 cut(s) 1036
BseSI GKGCMC 1 cut(s) 652
BseXI GCAGC 3 cut(s) 400, 635, 650
Bsh1236I CGCG 3 cut(s) 550, 771, 1038
BshFI GGCC 3 cut(s) 526, 792, 1132
BshNI GGYRCC 2 cut(s) 647, 1125
BshVI ATCGAT 1 cut(s) 112
BsiHKAI GWGCWC 1 cut(s) 586
BsiSI CCGG 2 cut(s) 1120, 1129
BslI CCNNNNNNNGG 2 cut(s) 559, 971
BsmAI GTCTC 3 cut(s) 75, 244, 310
BsmI GAATGC 2 cut(s) 181, 1095
BsnI GGCC 3 cut(s) 526, 792, 1132
Bsp1286I GDGCHC 2 cut(s) 586, 652
Bsp68I TCGCGA 1 cut(s) 771
BspACI CCGC 3 cut(s) 518, 530, 672
BspANI GGCC 3 cut(s) 526, 792, 1132
BspDI ATCGAT 1 cut(s) 112
BspFNI CGCG 3 cut(s) 550, 771, 1038
BspHI TCATGA 3 cut(s) 102, 457, 904
BspLI GGNNCC 4 cut(s) 649, 696, 822, 1127
BspMAI CTGCAG 1 cut(s) 625
BspMI ACCTGC 1 cut(s) 560
BspPI GGATC 4 cut(s) 117, 218, 284, 447
BspT107I GGYRCC 2 cut(s) 647, 1125
BspTI CTTAAG 1 cut(s) 56
BsrFI RCCGGY 1 cut(s) 1128
BsrI ACTGG 2 cut(s) 124, 533
BssAI RCCGGY 1 cut(s) 1128
BssECI CCNNGG 4 cut(s) 32, 394, 521, 558
BssHII GCGCGC 1 cut(s) 1036
BssSI CACGAG 1 cut(s) 129
BssT1I CCWWGG 1 cut(s) 521
Bst2BI CACGAG 1 cut(s) 129
Bst2UI CCWGG 1 cut(s) 588
Bst4CI ACNGT 1 cut(s) 478
Bst6I CTCTTC 2 cut(s) 237, 682
BstAFI CTTAAG 1 cut(s) 56
BstAPI GCANNNNNTGC 1 cut(s) 176
BstC8I GCNNGC 3 cut(s) 258, 973, 1038
BstDEI CTNAG 1 cut(s) 369
BstDSI CCRYGG 2 cut(s) 32, 558
BstF5I GGATG 3 cut(s) 514, 514, 752
BstFNI CGCG 3 cut(s) 550, 771, 1038
BstH2I RGCGCY 2 cut(s) 644, 972
BstHHI GCGC 6 cut(s) 552, 643, 971, 977, 1038, 1040
BstMAI GTCTC 3 cut(s) 75, 244, 310
BstMWI GCNNNNNNNGC 4 cut(s) 167, 176, 608, 647
BstNI CCWGG 1 cut(s) 588
BstNSI RCATGY 2 cut(s) 70, 367
BstSCI CCNGG 1 cut(s) 586
BstSFI CTRYAG 1 cut(s) 621
BstSLI GKGCMC 1 cut(s) 652
BstUI CGCG 3 cut(s) 550, 771, 1038
BstV1I GCAGC 3 cut(s) 400, 635, 650
BstX2I RGATCY 6 cut(s) 125, 210, 276, 439, 723, 899
BstYI RGATCY 6 cut(s) 125, 210, 276, 439, 723, 899
Bsu15I ATCGAT 1 cut(s) 112
Bsu36I CCTNAGG 1 cut(s) 369
BsuRI GGCC 3 cut(s) 526, 792, 1132
BsuTUI ATCGAT 1 cut(s) 112
BtgI CCRYGG 2 cut(s) 32, 558
BtsCI GGATG 3 cut(s) 514, 514, 752
BtsIMutI CAGTG 2 cut(s) 438, 540
BtuMI TCGCGA 1 cut(s) 771
BveI ACCTGC 1 cut(s) 560
Cac8I GCNNGC 3 cut(s) 258, 973, 1038
CaiI CAGNNNCTG 2 cut(s) 308, 482
CciI TCATGA 3 cut(s) 102, 457, 904
CfoI GCGC 6 cut(s) 552, 643, 971, 977, 1038, 1040
Cfr10I RCCGGY 1 cut(s) 1128
Cfr13I GGNCC 3 cut(s) 820, 962, 1028
ClaI ATCGAT 1 cut(s) 112
Csp6I GTAC 2 cut(s) 471, 1126
CviAII CATG 7 cut(s) 67, 103, 364, 458, 905, 985, 1063
CviQI GTAC 2 cut(s) 471, 1126
DdeI CTNAG 1 cut(s) 369
EaeI YGGCCR 2 cut(s) 790, 1130
Eam1104I CTCTTC 2 cut(s) 237, 682
EarI CTCTTC 2 cut(s) 237, 682
EciI GGCGGA 1 cut(s) 507
Ecl136II GAGCTC 1 cut(s) 584
Eco130I CCWWGG 1 cut(s) 521
Eco24I GRGCYC 1 cut(s) 586
Eco47I GGWCC 3 cut(s) 820, 962, 1028
Eco47III AGCGCT 2 cut(s) 642, 970
Eco53kI GAGCTC 1 cut(s) 584
Eco57I CTGAAG 2 cut(s) 141, 183
Eco81I CCTNAGG 1 cut(s) 369
EcoICRI GAGCTC 1 cut(s) 584
EcoO109I RGGNCCY 2 cut(s) 820, 1028
EcoRII CCWGG 1 cut(s) 586
EcoT14I CCWWGG 1 cut(s) 521
EcoT38I GRGCYC 1 cut(s) 586
ErhI CCWWGG 1 cut(s) 521
FaeI CATG 7 cut(s) 70, 106, 367, 461, 908, 988, 1066
FatI CATG 7 cut(s) 66, 102, 363, 457, 904, 984, 1062
FauI CCCGC 1 cut(s) 679
FbaI TGATCA 1 cut(s) 511
Fnu4HI GCNGC 3 cut(s) 389, 624, 639
FokI GGATG 3 cut(s) 501, 521, 739
FriOI GRGCYC 1 cut(s) 586
Fsp4HI GCNGC 3 cut(s) 389, 624, 639
FspBI CTAG 4 cut(s) 420, 522, 540, 966
GlaI GCGC 6 cut(s) 551, 642, 970, 976, 1037, 1039
GluI GCNGC 3 cut(s) 389, 624, 639
GsuI CTGGAG 1 cut(s) 570
HaeII RGCGCY 2 cut(s) 644, 972
HaeIII GGCC 3 cut(s) 526, 792, 1132
HapII CCGG 2 cut(s) 1120, 1129
HhaI GCGC 6 cut(s) 552, 643, 971, 977, 1038, 1040
Hin1II CATG 7 cut(s) 70, 106, 367, 461, 908, 988, 1066
Hin6I GCGC 6 cut(s) 550, 641, 969, 975, 1036, 1038
HinP1I GCGC 6 cut(s) 550, 641, 969, 975, 1036, 1038
HindIII AAGCTT 1 cut(s) 11
HinfI GANTC 6 cut(s) 27, 44, 291, 311, 428, 935
HpaII CCGG 2 cut(s) 1120, 1129
HphI GGTGA 1 cut(s) 200
Hpy166II GTNNAC 3 cut(s) 191, 836, 917
Hpy188I TCNGA 5 cut(s) 49, 310, 316, 323, 444
Hpy188III TCNNGA 9 cut(s) 103, 458, 746, 770, 800, 905, 950, 1004, 1110
Hpy8I GTNNAC 3 cut(s) 191, 836, 917
HpyAV CCTTC 2 cut(s) 100, 306
HpyCH4III ACNGT 1 cut(s) 478
HpyCH4IV ACGT 1 cut(s) 677
HpyCH4V TGCA 5 cut(s) 170, 260, 569, 623, 881
HpyF10VI GCNNNNNNNGC 4 cut(s) 167, 176, 608, 647
HpyF3I CTNAG 1 cut(s) 369
HpySE526I ACGT 1 cut(s) 677
Hsp92II CATG 7 cut(s) 70, 106, 367, 461, 908, 988, 1066
HspAI GCGC 6 cut(s) 550, 641, 969, 975, 1036, 1038
KpnI GGTACC 1 cut(s) 1129
Ksp22I TGATCA 1 cut(s) 511
LmnI GCTCC 3 cut(s) 581, 589, 599
Lsp1109I GCAGC 3 cut(s) 400, 635, 650
LweI GCATC 4 cut(s) 157, 598, 761, 793
MaeI CTAG 4 cut(s) 420, 522, 540, 966
MaeII ACGT 1 cut(s) 677
MaeIII GTNAC 3 cut(s) 145, 268, 856
MboII GAAGA 8 cut(s) 135, 176, 254, 271, 699, 758, 909, 987
MflI RGATCY 6 cut(s) 125, 210, 276, 439, 723, 899
MhlI GDGCHC 2 cut(s) 586, 652
MlsI TGGCCA 1 cut(s) 792
MluCI AATT 1 cut(s) 74
MluNI TGGCCA 1 cut(s) 792
MmeI TCCRAC 1 cut(s) 712
Mox20I TGGCCA 1 cut(s) 792
MroXI GAANNNNTTC 1 cut(s) 295
MscI TGGCCA 1 cut(s) 792
MseI TTAA 3 cut(s) 57, 222, 989
Msp20I TGGCCA 1 cut(s) 792
MspA1I CMGCKG 1 cut(s) 161
MspCI CTTAAG 1 cut(s) 56
MspI CCGG 2 cut(s) 1120, 1129
MspR9I CCNGG 1 cut(s) 588
Mva1269I GAATGC 2 cut(s) 181, 1095
MvaI CCWGG 1 cut(s) 588
MvnI CGCG 3 cut(s) 550, 771, 1038
MwoI GCNNNNNNNGC 4 cut(s) 167, 176, 608, 647
NlaIII CATG 7 cut(s) 70, 106, 367, 461, 908, 988, 1066
NlaIV GGNNCC 4 cut(s) 649, 696, 822, 1127
NmuCI GTSAC 2 cut(s) 145, 268
NruI TCGCGA 1 cut(s) 771
NspI RCATGY 2 cut(s) 70, 367
PagI TCATGA 3 cut(s) 102, 457, 904
PaqCI CACCTGC 1 cut(s) 560
PauI GCGCGC 1 cut(s) 1036
PciI ACATGT 1 cut(s) 66
PcsI WCGNNNNNNNCGW 1 cut(s) 892
PctI GAATGC 2 cut(s) 181, 1095
PdmI GAANNNNTTC 1 cut(s) 295
PfeI GAWTC 6 cut(s) 27, 44, 291, 311, 428, 935
PkrI GCNGC 3 cut(s) 390, 625, 640
PpuMI RGGWCCY 2 cut(s) 820, 1028
PscI ACATGT 1 cut(s) 66
Psp124BI GAGCTC 1 cut(s) 586
Psp5II RGGWCCY 2 cut(s) 820, 1028
Psp6I CCWGG 1 cut(s) 586
PspGI CCWGG 1 cut(s) 586
PspN4I GGNNCC 4 cut(s) 649, 696, 822, 1127
PspPI GGNCC 3 cut(s) 820, 962, 1028
PspPPI RGGWCCY 2 cut(s) 820, 1028
PstI CTGCAG 1 cut(s) 625
PstNI CAGNNNCTG 2 cut(s) 308, 482
PsuI RGATCY 6 cut(s) 125, 210, 276, 439, 723, 899
PteI GCGCGC 1 cut(s) 1036
PvuII CAGCTG 1 cut(s) 161
RruI TCGCGA 1 cut(s) 771
RsaI GTAC 2 cut(s) 472, 1127
RsaNI GTAC 2 cut(s) 471, 1126
SacI GAGCTC 1 cut(s) 586
SaqAI TTAA 3 cut(s) 57, 222, 989
SatI GCNGC 3 cut(s) 389, 624, 639
Sau96I GGNCC 3 cut(s) 820, 962, 1028
ScrFI CCNGG 1 cut(s) 588
SduI GDGCHC 2 cut(s) 586, 652
SfaNI GCATC 4 cut(s) 157, 598, 761, 793
SfcI CTRYAG 1 cut(s) 621
SinI GGWCC 3 cut(s) 820, 962, 1028
SmlI CTYRAG 2 cut(s) 56, 744
SmoI CTYRAG 2 cut(s) 56, 744
Sse9I AATT 1 cut(s) 74
SsiI CCGC 3 cut(s) 518, 530, 672
SspI AATATT 1 cut(s) 1010
SspMI CTAG 4 cut(s) 420, 522, 540, 966
SstI GAGCTC 1 cut(s) 586
StyD4I CCNGG 1 cut(s) 586
StyI CCWWGG 1 cut(s) 521
TaaI ACNGT 1 cut(s) 478
TaiI ACGT 1 cut(s) 680
TaqI TCGA 4 cut(s) 112, 289, 383, 1048
TasI AATT 1 cut(s) 74
TfiI GAWTC 6 cut(s) 27, 44, 291, 311, 428, 935
Tru1I TTAA 3 cut(s) 57, 222, 989
Tru9I TTAA 3 cut(s) 57, 222, 989
TscAI CASTG 2 cut(s) 438, 540
TseFI GTSAC 2 cut(s) 145, 268
TseI GCWGC 3 cut(s) 388, 623, 638
Tsp45I GTSAC 2 cut(s) 145, 268
TspDTI ATGAA 4 cut(s) 119, 288, 921, 969
TspGWI ACGGA 2 cut(s) 22, 745
TspRI CASTG 2 cut(s) 438, 540
Vha464I CTTAAG 1 cut(s) 56
VpaK11BI GGWCC 3 cut(s) 820, 962, 1028
XapI RAATTY 1 cut(s) 74
XceI RCATGY 2 cut(s) 70, 367
XmaJI CCTAGG 1 cut(s) 521
XmnI GAANNNNTTC 1 cut(s) 295
XspI CTAG 4 cut(s) 420, 522, 540, 966
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.