Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0003388

Physical Location & Seq

Genomic Coordinates Forward (+)

22034087 .. 22038980

Gene Structure 4894 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG197900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGACCGCAGGCTTGTGGTTTTGGGCATTCCATGGGATATTGATACAGACGGGTTGAGAGAGTATATGATCAAATATGGGGAATTGGAGGATTGTATTGTAATGAAGGAGCGGTCAACTGGCCGATCTCGTGGATTTGGATATGTAACGTTTGCATCAGCTGAGGATGCCAAGAGCGTGTCATTCAGTGAGCACTTTCTTGGTAATAGAATGCTGGAAGTTAAAGTGGCTACCCCAAAGGAAGAGATGAGAGCACCTGCAAGAAAAGTTACCAGGATATTTGTTGCAAGGATCCCACAATTTGTGACAGAAGCAAACTTTCGAGGGATCAAGGCTCAAAAATGCATAGAGGAATTGGGTTTATTACCTTTGAAAATGCAGGAAGATGACTTTAAACCAGTGGGCAGAATGCCAGCACCACAGGGTGGATATGGTGCATGCAATGCATTAGAAGTTTCAAAACATAAATTTTCTCTTTGGTCCAACAATGCAATAATTACAATATGGGTTAGCAGTATATCATTTGATACATATGCTGATATTGCATCTGAGGGCACAGCTGATGTGGGAGTAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005849 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

RRM_1

Protein Analysis

192

Amino Acids

21.41

Weight (kDa)

6.18

Isoelectric Point (pI)

36.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	5 - 59	1.3e-11	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003388)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36960 AT4G36960
fragaria_vesca	FvH4_1g16100 FvH4_1g16100 FvH4_1g16100 FvH4_1g16100 FvH4_1g16100 FvH4_1g16100 FvH4_1g16100
malus_domestica	MD02G1172600.v1.1 MD15G1284600.v1.1
prunus_persica	Prupe.7G132900_v2.0.a1
pyrus_communis	pycom02g13910 pycom15g24730
rosa_chinensis	RchiOBHm_Chr2g0105721
rosa_laevigata	RLG00000017453
rosa_multiflora	Rmu_sc0000594.1_g000060 Rmu_sc0001051.1_g000061 Rmu_sc0039055.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002090 Rroxscaffold_1G00038100 Rroxscaffold_2G00137950 Rroxscaffold_5G00348070
rosa_rugosa	Rorug01G0167000 Rorug02G0129800 Rorug02G0283100
rosa_samantha	Rh2AG181200 Rh2BG190300 Rh2CG185400 Rh5BG197900 Rh5BG450300 Rh5CG472700 Rh5DG291600 Rh5DG464000 Rh6AG247300
rosa_wichuraiana	Rw2G014170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	265
Acc36I	ACCTGC	1 cut(s)	265
AccB7I	CCANNNNNTGG	1 cut(s)	425
AccBSI	CCGCTC	1 cut(s)	112
AciI	CCGC	2 cut(s)	7, 112
AclI	AACGTT	1 cut(s)	149
AclWI	GGATC	3 cut(s)	286, 299, 335
AcoI	YGGCCR	1 cut(s)	121
AcsI	RAATTY	1 cut(s)	467
AdeI	CACNNNGTG	1 cut(s)	425
AfiI	CCNNNNNNNGG	1 cut(s)	425
AgsI	TTSAA	2 cut(s)	373, 459
AjnI	CCWGG	1 cut(s)	272
AluBI	AGCT	2 cut(s)	161, 560
AluI	AGCT	2 cut(s)	161, 560
Alw21I	GWGCWC	2 cut(s)	195, 256
AlwI	GGATC	3 cut(s)	286, 299, 335
AoxI	GGCC	1 cut(s)	121
ApoI	RAATTY	1 cut(s)	467
AspS9I	GGNCC	2 cut(s)	4, 480
AvaII	GGWCC	2 cut(s)	4, 480
BaeGI	GKGCMC	1 cut(s)	557
BamHI	GGATCC	1 cut(s)	291
BauI	CACGAG	1 cut(s)	129
Bbv12I	GWGCWC	2 cut(s)	195, 256
BbvCI	CCTCAGC	1 cut(s)	162
BciT130I	CCWGG	1 cut(s)	274
BclI	TGATCA	1 cut(s)	69
BfuAI	ACCTGC	1 cut(s)	265
Bme1390I	CCNGG	1 cut(s)	274
Bme18I	GGWCC	2 cut(s)	4, 480
BmgT120I	GGNCC	2 cut(s)	4, 480
BmiI	GGNNCC	1 cut(s)	293
BmrFI	CCNGG	1 cut(s)	274
BmsI	GCATC	3 cut(s)	157, 164, 554
Bpu10I	CCTNAGC	1 cut(s)	162
BsaJI	CCNNGG	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	1 cut(s)	425
Bse1I	ACTGG	2 cut(s)	124, 398
Bse3DI	GCAATG	1 cut(s)	448
BseBI	CCWGG	1 cut(s)	274
BseDI	CCNNGG	1 cut(s)	32
BseGI	GGATG	1 cut(s)	172
BseLI	CCNNNNNNNGG	1 cut(s)	425
BseMI	GCAATG	1 cut(s)	448
BseMII	CTCAG	2 cut(s)	153, 540
BseNI	ACTGG	2 cut(s)	124, 398
BseSI	GKGCMC	1 cut(s)	557
BshFI	GGCC	1 cut(s)	123
BsiHKAI	GWGCWC	2 cut(s)	195, 256
BslI	CCNNNNNNNGG	1 cut(s)	425
BsmI	GAATGC	3 cut(s)	27, 216, 414
BsnI	GGCC	1 cut(s)	123
Bsp1286I	GDGCHC	3 cut(s)	195, 256, 557
Bsp143I	GATC	4 cut(s)	69, 125, 291, 327
Bsp19I	CCATGG	1 cut(s)	32
BspACI	CCGC	2 cut(s)	7, 112
BspANI	GGCC	1 cut(s)	123
BspCNI	CTCAG	2 cut(s)	154, 541
BspLI	GGNNCC	1 cut(s)	293
BspMI	ACCTGC	1 cut(s)	265
BspPI	GGATC	3 cut(s)	286, 299, 335
BsrBI	CCGCTC	1 cut(s)	112
BsrDI	GCAATG	1 cut(s)	448
BsrI	ACTGG	2 cut(s)	124, 398
BssECI	CCNNGG	1 cut(s)	32
BssMI	GATC	4 cut(s)	69, 125, 291, 327
BssSI	CACGAG	1 cut(s)	129
BssT1I	CCWWGG	1 cut(s)	32
Bst2BI	CACGAG	1 cut(s)	129
Bst2UI	CCWGG	1 cut(s)	274
Bst6I	CTCTTC	1 cut(s)	237
BstAPI	GCANNNNNTGC	1 cut(s)	443
BstC8I	GCNNGC	3 cut(s)	11, 414, 439
BstDEI	CTNAG	2 cut(s)	162, 549
BstDSI	CCRYGG	1 cut(s)	32
BstF5I	GGATG	1 cut(s)	172
BstKTI	GATC	4 cut(s)	72, 128, 294, 330
BstMBI	GATC	4 cut(s)	69, 125, 291, 327
BstMWI	GCNNNNNNNGC	3 cut(s)	167, 443, 542
BstNI	CCWGG	1 cut(s)	274
BstNSI	RCATGY	1 cut(s)	441
BstSCI	CCNGG	1 cut(s)	272
BstSLI	GKGCMC	1 cut(s)	557
BstX2I	RGATCY	1 cut(s)	291
BstYI	RGATCY	1 cut(s)	291
BsuRI	GGCC	1 cut(s)	123
BtgI	CCRYGG	1 cut(s)	32
BtsCI	GGATG	1 cut(s)	172
BtsIMutI	CAGTG	2 cut(s)	193, 405
BveI	ACCTGC	1 cut(s)	265
Cac8I	GCNNGC	3 cut(s)	11, 414, 439
Cfr13I	GGNCC	2 cut(s)	4, 480
CviAII	CATG	2 cut(s)	33, 438
CviJI	RGCY	6 cut(s)	13, 123, 161, 230, 335, 560
CviKI_1	RGCY	6 cut(s)	13, 123, 161, 230, 335, 560
DdeI	CTNAG	2 cut(s)	162, 549
DpnI	GATC	4 cut(s)	71, 127, 293, 329
DpnII	GATC	4 cut(s)	69, 125, 291, 327
DraI	TTTAAA	1 cut(s)	394
DraIII	CACNNNGTG	1 cut(s)	425
EaeI	YGGCCR	1 cut(s)	121
Eam1104I	CTCTTC	1 cut(s)	237
EarI	CTCTTC	1 cut(s)	237
Eco130I	CCWWGG	1 cut(s)	32
Eco47I	GGWCC	2 cut(s)	4, 480
EcoRII	CCWGG	1 cut(s)	272
EcoT14I	CCWWGG	1 cut(s)	32
EcoT22I	ATGCAT	2 cut(s)	347, 448
ErhI	CCWWGG	1 cut(s)	32
FaeI	CATG	2 cut(s)	36, 441
FatI	CATG	2 cut(s)	32, 437
FauNDI	CATATG	1 cut(s)	532
FbaI	TGATCA	1 cut(s)	69
FokI	GGATG	1 cut(s)	179
HaeIII	GGCC	1 cut(s)	123
Hin1II	CATG	2 cut(s)	36, 441
HincII	GTYRAC	1 cut(s)	117
HindII	GTYRAC	1 cut(s)	117
Hpy166II	GTNNAC	1 cut(s)	117
Hpy188I	TCNGA	1 cut(s)	550
Hpy8I	GTNNAC	1 cut(s)	117
HpyAV	CCTTC	1 cut(s)	100
HpyCH4IV	ACGT	1 cut(s)	149
HpyF10VI	GCNNNNNNNGC	3 cut(s)	167, 443, 542
HpyF3I	CTNAG	2 cut(s)	162, 549
HpySE526I	ACGT	1 cut(s)	149
Hsp92II	CATG	2 cut(s)	36, 441
Ksp22I	TGATCA	1 cut(s)	69
Kzo9I	GATC	4 cut(s)	69, 125, 291, 327
LmnI	GCTCC	1 cut(s)	109
LpnPI	CCDG	9 cut(s)	105, 200, 259, 270, 286, 365, 407, 411, 426
LweI	GCATC	3 cut(s)	157, 164, 554
MaeII	ACGT	1 cut(s)	149
MaeIII	GTNAC	3 cut(s)	145, 268, 304
MalI	GATC	4 cut(s)	71, 127, 293, 329
MbiI	CCGCTC	1 cut(s)	112
MboI	GATC	4 cut(s)	69, 125, 291, 327
MboII	GAAGA	2 cut(s)	254, 395
MflI	RGATCY	1 cut(s)	291
MhlI	GDGCHC	3 cut(s)	195, 256, 557
MluCI	AATT	5 cut(s)	83, 299, 353, 467, 495
MmeI	TCCRAC	1 cut(s)	507
MnlI	CCTC	5 cut(s)	82, 157, 317, 343, 544
Mph1103I	ATGCAT	2 cut(s)	347, 448
MseI	TTAA	2 cut(s)	222, 393
MspA1I	CMGCKG	2 cut(s)	161, 560
MspR9I	CCNGG	1 cut(s)	274
Mva1269I	GAATGC	3 cut(s)	27, 216, 414
MvaI	CCWGG	1 cut(s)	274
MwoI	GCNNNNNNNGC	3 cut(s)	167, 443, 542
NcoI	CCATGG	1 cut(s)	32
NdeI	CATATG	1 cut(s)	532
NdeII	GATC	4 cut(s)	69, 125, 291, 327
NlaIII	CATG	2 cut(s)	36, 441
NlaIV	GGNNCC	1 cut(s)	293
NmuCI	GTSAC	1 cut(s)	304
NsiI	ATGCAT	2 cut(s)	347, 448
NspI	RCATGY	1 cut(s)	441
PaeI	GCATGC	1 cut(s)	441
PaqCI	CACCTGC	1 cut(s)	265
PctI	GAATGC	3 cut(s)	27, 216, 414
PflMI	CCANNNNNTGG	1 cut(s)	425
Psp1406I	AACGTT	1 cut(s)	149
Psp6I	CCWGG	1 cut(s)	272
PspGI	CCWGG	1 cut(s)	272
PspN4I	GGNNCC	1 cut(s)	293
PspPI	GGNCC	2 cut(s)	4, 480
PsuI	RGATCY	1 cut(s)	291
PvuII	CAGCTG	2 cut(s)	161, 560
SaqAI	TTAA	2 cut(s)	222, 393
Sau3AI	GATC	4 cut(s)	69, 125, 291, 327
Sau96I	GGNCC	2 cut(s)	4, 480
ScrFI	CCNGG	1 cut(s)	274
SduI	GDGCHC	3 cut(s)	195, 256, 557
SetI	ASST	5 cut(s)	152, 163, 259, 370, 562
SfaNI	GCATC	3 cut(s)	157, 164, 554
SinI	GGWCC	2 cut(s)	4, 480
SphI	GCATGC	1 cut(s)	441
Sse9I	AATT	5 cut(s)	83, 299, 353, 467, 495
SsiI	CCGC	2 cut(s)	7, 112
StyD4I	CCNGG	1 cut(s)	272
StyI	CCWWGG	1 cut(s)	32
TaiI	ACGT	1 cut(s)	152
TaqI	TCGA	1 cut(s)	322
TasI	AATT	5 cut(s)	83, 299, 353, 467, 495
Tru1I	TTAA	2 cut(s)	222, 393
Tru9I	TTAA	2 cut(s)	222, 393
TscAI	CASTG	2 cut(s)	193, 405
TseFI	GTSAC	1 cut(s)	304
Tsp45I	GTSAC	1 cut(s)	304
TspDTI	ATGAA	1 cut(s)	119
TspRI	CASTG	2 cut(s)	193, 405
Van91I	CCANNNNNTGG	1 cut(s)	425
VpaK11BI	GGWCC	2 cut(s)	4, 480
XapI	RAATTY	1 cut(s)	467
XceI	RCATGY	1 cut(s)	441
Zsp2I	ATGCAT	2 cut(s)	347, 448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.