Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003388

Physical Location & Seq

Genomic Coordinates Reverse (-)

30712315 .. 30716146

Gene Structure 3832 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0283100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGGCGAACAATCCGTCGCAGCTACTCCCCTCAGAGTTGATCGACCGGTGCATAGGGTCGAAGATATGGGTGATCATGAAGGGCGACAAGGAGCTCGTCGGAACTCTCAGGGGTTTCGATGTCTACGTCAACATGGTTCTTGAAGACGTCACTGAATACGAGATTACTGCCGAAGGAAGAAGGATAACCAAGCTTGATCAGATTTTACTCAACGGAAACAACATTGCCATTCTGGTCCCAGGTGGCTCCCCTGAATCAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005849 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

RRM_1

Protein Analysis

87

Amino Acids

9.6

Weight (kDa)

4.6

Isoelectric Point (pI)

49.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LSM	PF01423	13 - 80	3.3e-20	LSM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003388)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36960 AT4G36960
fragaria_vesca	FvH4_1g16100 FvH4_1g16100 FvH4_1g16100 FvH4_1g16100 FvH4_1g16100 FvH4_1g16100 FvH4_1g16100
malus_domestica	MD02G1172600.v1.1 MD15G1284600.v1.1
prunus_persica	Prupe.7G132900_v2.0.a1
pyrus_communis	pycom02g13910 pycom15g24730
rosa_chinensis	RchiOBHm_Chr2g0105721
rosa_laevigata	RLG00000017453
rosa_multiflora	Rmu_sc0000594.1_g000060 Rmu_sc0001051.1_g000061 Rmu_sc0039055.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002090 Rroxscaffold_1G00038100 Rroxscaffold_2G00137950 Rroxscaffold_5G00348070
rosa_rugosa	Rorug01G0167000 Rorug02G0129800 Rorug02G0283100
rosa_samantha	Rh2AG181200 Rh2BG190300 Rh2CG185400 Rh5BG197900 Rh5BG450300 Rh5CG472700 Rh5DG291600 Rh5DG464000 Rh6AG247300
rosa_wichuraiana	Rw2G014170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	150
AccI	GTMKAC	1 cut(s)	123
AcyI	GRCGYC	1 cut(s)	147
AgeI	ACCGGT	1 cut(s)	45
AgsI	TTSAA	1 cut(s)	143
AjnI	CCWGG	1 cut(s)	238
AluBI	AGCT	3 cut(s)	22, 94, 193
AluI	AGCT	3 cut(s)	22, 94, 193
Alw21I	GWGCWC	1 cut(s)	96
ApeKI	GCWGC	1 cut(s)	19
ArsI	GACNNNNNNTTYG	1 cut(s)	31
AsiGI	ACCGGT	1 cut(s)	45
AspS9I	GGNCC	1 cut(s)	235
AsuHPI	GGTGA	1 cut(s)	82
AvaII	GGWCC	1 cut(s)	235
BanII	GRGCYC	1 cut(s)	96
BbsI	GAAGAC	1 cut(s)	150
Bbv12I	GWGCWC	1 cut(s)	96
BbvI	GCAGC	1 cut(s)	31
BcgI	CGANNNNNNTGC	2 cut(s)	149, 183
BciT130I	CCWGG	1 cut(s)	240
BclI	TGATCA	2 cut(s)	72, 196
BisI	GCNGC	1 cut(s)	20
BlsI	GCNGC	1 cut(s)	21
Bme1390I	CCNGG	1 cut(s)	240
Bme18I	GGWCC	1 cut(s)	235
BmgT120I	GGNCC	1 cut(s)	235
BmiI	GGNNCC	2 cut(s)	237, 247
BmrFI	CCNGG	1 cut(s)	240
BpiI	GAAGAC	1 cut(s)	150
BsaHI	GRCGYC	1 cut(s)	147
BsaJI	CCNNGG	1 cut(s)	238
BsaWI	WCCGGW	1 cut(s)	45
Bse118I	RCCGGY	1 cut(s)	45
Bse3DI	GCAATG	1 cut(s)	222
BseBI	CCWGG	1 cut(s)	240
BseDI	CCNNGG	1 cut(s)	238
BseMI	GCAATG	1 cut(s)	222
BseMII	CTCAG	2 cut(s)	45, 121
BseXI	GCAGC	1 cut(s)	31
Bsh1285I	CGRYCG	1 cut(s)	46
BshTI	ACCGGT	1 cut(s)	45
BsiEI	CGRYCG	1 cut(s)	46
BsiHKAI	GWGCWC	1 cut(s)	96
BsiSI	CCGG	1 cut(s)	46
BslFI	GGGAC	1 cut(s)	221
BsmFI	GGGAC	1 cut(s)	221
Bsp1286I	GDGCHC	1 cut(s)	96
Bsp143I	GATC	3 cut(s)	39, 72, 196
BspCNI	CTCAG	2 cut(s)	44, 120
BspHI	TCATGA	1 cut(s)	75
BspLI	GGNNCC	2 cut(s)	237, 247
BsrDI	GCAATG	1 cut(s)	222
BsrFI	RCCGGY	1 cut(s)	45
BssAI	RCCGGY	1 cut(s)	45
BssECI	CCNNGG	1 cut(s)	238
BssMI	GATC	3 cut(s)	39, 72, 196
BssNI	GRCGYC	1 cut(s)	147
Bst2UI	CCWGG	1 cut(s)	240
BstACI	GRCGYC	1 cut(s)	147
BstDEI	CTNAG	2 cut(s)	31, 107
BstKTI	GATC	3 cut(s)	42, 75, 199
BstMBI	GATC	3 cut(s)	39, 72, 196
BstMCI	CGRYCG	1 cut(s)	46
BstNI	CCWGG	1 cut(s)	240
BstSCI	CCNGG	1 cut(s)	238
BstV1I	GCAGC	1 cut(s)	31
BstV2I	GAAGAC	1 cut(s)	150
BtsIMutI	CAGTG	1 cut(s)	150
CciI	TCATGA	1 cut(s)	75
Cfr10I	RCCGGY	1 cut(s)	45
Cfr13I	GGNCC	1 cut(s)	235
CspAI	ACCGGT	1 cut(s)	45
CviAII	CATG	2 cut(s)	76, 133
CviJI	RGCY	4 cut(s)	22, 94, 193, 246
CviKI_1	RGCY	4 cut(s)	22, 94, 193, 246
DdeI	CTNAG	2 cut(s)	31, 107
DpnI	GATC	3 cut(s)	41, 74, 198
DpnII	GATC	3 cut(s)	39, 72, 196
Ecl136II	GAGCTC	1 cut(s)	94
Eco24I	GRGCYC	1 cut(s)	96
Eco47I	GGWCC	1 cut(s)	235
Eco53kI	GAGCTC	1 cut(s)	94
EcoICRI	GAGCTC	1 cut(s)	94
EcoRII	CCWGG	1 cut(s)	238
EcoT38I	GRGCYC	1 cut(s)	96
FaeI	CATG	2 cut(s)	79, 136
FaiI	YATR	4 cut(s)	53, 67, 77, 134
FaqI	GGGAC	1 cut(s)	221
FatI	CATG	2 cut(s)	75, 132
FbaI	TGATCA	2 cut(s)	72, 196
FblI	GTMKAC	1 cut(s)	123
Fnu4HI	GCNGC	1 cut(s)	20
FriOI	GRGCYC	1 cut(s)	96
Fsp4HI	GCNGC	1 cut(s)	20
GluI	GCNGC	1 cut(s)	20
HapII	CCGG	1 cut(s)	46
Hin1I	GRCGYC	1 cut(s)	147
Hin1II	CATG	2 cut(s)	79, 136
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HindIII	AAGCTT	1 cut(s)	191
HinfI	GANTC	1 cut(s)	254
HpaII	CCGG	1 cut(s)	46
HphI	GGTGA	1 cut(s)	82
Hpy166II	GTNNAC	2 cut(s)	124, 130
Hpy188I	TCNGA	4 cut(s)	34, 101, 201, 259
Hpy188III	TCNNGA	2 cut(s)	76, 140
Hpy8I	GTNNAC	2 cut(s)	124, 130
Hpy99I	CGWCG	2 cut(s)	19, 101
HpyAV	CCTTC	3 cut(s)	73, 167, 174
HpyCH4IV	ACGT	2 cut(s)	126, 147
HpyCH4V	TGCA	1 cut(s)	51
HpyF3I	CTNAG	2 cut(s)	31, 107
HpySE526I	ACGT	2 cut(s)	126, 147
Hsp92I	GRCGYC	1 cut(s)	147
Hsp92II	CATG	2 cut(s)	79, 136
Ksp22I	TGATCA	2 cut(s)	72, 196
Kzo9I	GATC	3 cut(s)	39, 72, 196
LmnI	GCTCC	2 cut(s)	91, 251
LpnPI	CCDG	5 cut(s)	59, 94, 218, 225, 252
Lsp1109I	GCAGC	1 cut(s)	31
MaeII	ACGT	2 cut(s)	126, 147
MaeIII	GTNAC	1 cut(s)	148
MalI	GATC	3 cut(s)	41, 74, 198
MboI	GATC	3 cut(s)	39, 72, 196
MboII	GAAGA	3 cut(s)	73, 155, 189
MhlI	GDGCHC	1 cut(s)	96
MmeI	TCCRAC	1 cut(s)	79
MnlI	CCTC	1 cut(s)	40
MspI	CCGG	1 cut(s)	46
MspR9I	CCNGG	1 cut(s)	240
MvaI	CCWGG	1 cut(s)	240
NdeII	GATC	3 cut(s)	39, 72, 196
NlaIII	CATG	2 cut(s)	79, 136
NlaIV	GGNNCC	2 cut(s)	237, 247
NmuCI	GTSAC	1 cut(s)	148
PagI	TCATGA	1 cut(s)	75
PcsI	WCGNNNNNNNCGW	1 cut(s)	123
PfeI	GAWTC	1 cut(s)	254
PinAI	ACCGGT	1 cut(s)	45
PkrI	GCNGC	1 cut(s)	21
Psp124BI	GAGCTC	1 cut(s)	96
Psp6I	CCWGG	1 cut(s)	238
PspGI	CCWGG	1 cut(s)	238
PspN4I	GGNNCC	2 cut(s)	237, 247
PspPI	GGNCC	1 cut(s)	235
SacI	GAGCTC	1 cut(s)	96
SatI	GCNGC	1 cut(s)	20
Sau3AI	GATC	3 cut(s)	39, 72, 196
Sau96I	GGNCC	1 cut(s)	235
ScrFI	CCNGG	1 cut(s)	240
SduI	GDGCHC	1 cut(s)	96
SetI	ASST	6 cut(s)	24, 96, 129, 150, 195, 244
SinI	GGWCC	1 cut(s)	235
SstI	GAGCTC	1 cut(s)	96
StyD4I	CCNGG	1 cut(s)	238
TaiI	ACGT	2 cut(s)	129, 150
TaqI	TCGA	3 cut(s)	42, 59, 117
TfiI	GAWTC	1 cut(s)	254
TscAI	CASTG	1 cut(s)	157
TseFI	GTSAC	1 cut(s)	148
TseI	GCWGC	1 cut(s)	19
Tsp45I	GTSAC	1 cut(s)	148
TspDTI	ATGAA	1 cut(s)	92
TspGWI	ACGGA	1 cut(s)	228
TspRI	CASTG	1 cut(s)	157
VpaK11BI	GGWCC	1 cut(s)	235
XmiI	GTMKAC	1 cut(s)	123
ZraI	GACGTC	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.