Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003388

Physical Location & Seq

Genomic Coordinates Forward (+)

2532123 .. 2534674

Gene Structure 2552 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00002090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGTCCACTCTCGAAGCCCGAATCTCCCTCGTCACCGCTCTCGCCACCCAAGCCTCCTCCGGTTTCTCTGCACTTGATATATCCATGGACCGCACGCTTGTGGTTTTGGGCATTCTATGGGATATTGATACGGACGGGTTGCGAGAGTATATGAGAAAATATGGGGAATTGGAGGATTGTATTGTAATGAAGGAGCGGTCAACTGGCCGATCTCGTGGATTTGGATATGTAACGTTTGCATCAGGCGAGGATGCCAAGGAAGAGATGAGAGCACCTACAAGAAAAGTTACCAGGATATTTGTTGCAAGGATCCCACAATTTGTGACAGAAGCAAACTTTCGAGGTCATTTTGGGAAATATGGAGAGATAACAGATTTATACATGCCGAAGGTTCTCTATCTAAGTATGTGTACTTTCTTTTGGTACTTTTCAAGACACATGCACTCAAGTCATTCTAAGATCAAGGCTCAAAAATGCATAGAGGAATTGGGTTTATTACCTTTGAAAATGCAGGAAGATGACTTTAAACCAGTGGGCAGAATGCCAGCACCACAGGGTGGATATGGTGCATGCAATGCGTATATCTCTGCAGCCACTAGATATGCAGCCCTTGGGGCTCCAACTTTGTATGATAATCAATTGCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005849 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

RRM_1

Protein Analysis

215

Amino Acids

24.19

Weight (kDa)

8.29

Isoelectric Point (pI)

45.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	35 - 87	1.4e-10	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003388)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36960 AT4G36960
fragaria_vesca	FvH4_1g16100 FvH4_1g16100 FvH4_1g16100 FvH4_1g16100 FvH4_1g16100 FvH4_1g16100 FvH4_1g16100
malus_domestica	MD02G1172600.v1.1 MD15G1284600.v1.1
prunus_persica	Prupe.7G132900_v2.0.a1
pyrus_communis	pycom02g13910 pycom15g24730
rosa_chinensis	RchiOBHm_Chr2g0105721
rosa_laevigata	RLG00000017453
rosa_multiflora	Rmu_sc0000594.1_g000060 Rmu_sc0001051.1_g000061 Rmu_sc0039055.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002090 Rroxscaffold_1G00038100 Rroxscaffold_2G00137950 Rroxscaffold_5G00348070
rosa_rugosa	Rorug01G0167000 Rorug02G0129800 Rorug02G0283100
rosa_samantha	Rh2AG181200 Rh2BG190300 Rh2CG185400 Rh5BG197900 Rh5BG450300 Rh5CG472700 Rh5DG291600 Rh5DG464000 Rh6AG247300
rosa_wichuraiana	Rw2G014170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	557
AccBSI	CCGCTC	2 cut(s)	38, 196
AciI	CCGC	3 cut(s)	36, 91, 196
AclI	AACGTT	1 cut(s)	233
AclWI	GGATC	2 cut(s)	304, 317
AcoI	YGGCCR	1 cut(s)	205
AdeI	CACNNNGTG	1 cut(s)	557
AfaI	GTAC	2 cut(s)	412, 425
AfiI	CCNNNNNNNGG	1 cut(s)	557
AgsI	TTSAA	2 cut(s)	432, 505
AjnI	CCWGG	1 cut(s)	290
AleI	CACNNNNGTG	1 cut(s)	98
Alw21I	GWGCWC	1 cut(s)	274
AlwI	GGATC	2 cut(s)	304, 317
AoxI	GGCC	1 cut(s)	205
ApeKI	GCWGC	2 cut(s)	590, 605
AspS9I	GGNCC	1 cut(s)	88
AsuHPI	GGTGA	1 cut(s)	25
AvaII	GGWCC	1 cut(s)	88
BamHI	GGATCC	1 cut(s)	309
BanII	GRGCYC	1 cut(s)	619
BauI	CACGAG	1 cut(s)	213
Bbv12I	GWGCWC	1 cut(s)	274
BbvI	GCAGC	2 cut(s)	602, 617
BciT130I	CCWGG	1 cut(s)	292
BfaI	CTAG	1 cut(s)	597
BfmI	CTRYAG	1 cut(s)	588
BglI	GCCNNNNNGGC	1 cut(s)	614
BisI	GCNGC	2 cut(s)	591, 606
BlsI	GCNGC	2 cut(s)	592, 607
Bme1390I	CCNGG	1 cut(s)	292
Bme18I	GGWCC	1 cut(s)	88
BmgT120I	GGNCC	1 cut(s)	88
BmiI	GGNNCC	2 cut(s)	311, 618
BmrFI	CCNGG	1 cut(s)	292
BmsI	GCATC	2 cut(s)	241, 248
BpuEI	CTTGAG	1 cut(s)	430
BsaJI	CCNNGG	3 cut(s)	84, 255, 610
BsaWI	WCCGGW	1 cut(s)	59
Bsc4I	CCNNNNNNNGG	1 cut(s)	557
Bse1I	ACTGG	2 cut(s)	208, 530
Bse3DI	GCAATG	1 cut(s)	580
BseBI	CCWGG	1 cut(s)	292
BseDI	CCNNGG	3 cut(s)	84, 255, 610
BseGI	GGATG	1 cut(s)	256
BseLI	CCNNNNNNNGG	1 cut(s)	557
BseMI	GCAATG	1 cut(s)	580
BseNI	ACTGG	2 cut(s)	208, 530
BseRI	GAGGAG	1 cut(s)	46
BseXI	GCAGC	2 cut(s)	602, 617
BsgI	GTGCAG	1 cut(s)	54
BshFI	GGCC	1 cut(s)	207
BsiHKAI	GWGCWC	1 cut(s)	274
BsiSI	CCGG	1 cut(s)	60
BslI	CCNNNNNNNGG	1 cut(s)	557
BsmI	GAATGC	2 cut(s)	111, 546
BsnI	GGCC	1 cut(s)	207
Bsp1286I	GDGCHC	2 cut(s)	274, 619
Bsp143I	GATC	3 cut(s)	209, 309, 459
Bsp19I	CCATGG	1 cut(s)	84
BspACI	CCGC	3 cut(s)	36, 91, 196
BspANI	GGCC	1 cut(s)	207
BspLI	GGNNCC	2 cut(s)	311, 618
BspMAI	CTGCAG	1 cut(s)	592
BspPI	GGATC	2 cut(s)	304, 317
BsrBI	CCGCTC	2 cut(s)	38, 196
BsrDI	GCAATG	1 cut(s)	580
BsrI	ACTGG	2 cut(s)	208, 530
BssECI	CCNNGG	3 cut(s)	84, 255, 610
BssMI	GATC	3 cut(s)	209, 309, 459
BssSI	CACGAG	1 cut(s)	213
BssT1I	CCWWGG	3 cut(s)	84, 255, 610
Bst2BI	CACGAG	1 cut(s)	213
Bst2UI	CCWGG	1 cut(s)	292
Bst6I	CTCTTC	1 cut(s)	255
BstAPI	GCANNNNNTGC	1 cut(s)	575
BstC8I	GCNNGC	3 cut(s)	95, 546, 571
BstDEI	CTNAG	2 cut(s)	401, 456
BstDSI	CCRYGG	1 cut(s)	84
BstF5I	GGATG	1 cut(s)	256
BstKTI	GATC	3 cut(s)	212, 312, 462
BstMBI	GATC	3 cut(s)	209, 309, 459
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 575, 614
BstNI	CCWGG	1 cut(s)	292
BstNSI	RCATGY	3 cut(s)	385, 442, 573
BstSCI	CCNGG	1 cut(s)	290
BstSFI	CTRYAG	1 cut(s)	588
BstV1I	GCAGC	2 cut(s)	602, 617
BstX2I	RGATCY	1 cut(s)	309
BstYI	RGATCY	1 cut(s)	309
BsuRI	GGCC	1 cut(s)	207
BtgI	CCRYGG	1 cut(s)	84
BtsCI	GGATG	1 cut(s)	256
BtsIMutI	CAGTG	1 cut(s)	537
Cac8I	GCNNGC	3 cut(s)	95, 546, 571
Cfr13I	GGNCC	1 cut(s)	88
Csp6I	GTAC	2 cut(s)	411, 424
CviAII	CATG	4 cut(s)	85, 382, 439, 570
CviJI	RGCY	7 cut(s)	17, 53, 207, 467, 593, 608, 617
CviKI_1	RGCY	7 cut(s)	17, 53, 207, 467, 593, 608, 617
CviQI	GTAC	2 cut(s)	411, 424
DdeI	CTNAG	2 cut(s)	401, 456
DpnI	GATC	3 cut(s)	211, 311, 461
DpnII	GATC	3 cut(s)	209, 309, 459
DraI	TTTAAA	1 cut(s)	526
DraIII	CACNNNGTG	1 cut(s)	557
EaeI	YGGCCR	1 cut(s)	205
Eam1104I	CTCTTC	1 cut(s)	255
EarI	CTCTTC	1 cut(s)	255
Eco130I	CCWWGG	3 cut(s)	84, 255, 610
Eco24I	GRGCYC	1 cut(s)	619
Eco47I	GGWCC	1 cut(s)	88
EcoRII	CCWGG	1 cut(s)	290
EcoT14I	CCWWGG	3 cut(s)	84, 255, 610
EcoT22I	ATGCAT	1 cut(s)	479
EcoT38I	GRGCYC	1 cut(s)	619
ErhI	CCWWGG	3 cut(s)	84, 255, 610
FaeI	CATG	4 cut(s)	88, 385, 442, 573
FatI	CATG	4 cut(s)	84, 381, 438, 569
Fnu4HI	GCNGC	2 cut(s)	591, 606
FokI	GGATG	1 cut(s)	263
FriOI	GRGCYC	1 cut(s)	619
Fsp4HI	GCNGC	2 cut(s)	591, 606
FspBI	CTAG	1 cut(s)	597
GluI	GCNGC	2 cut(s)	591, 606
HaeIII	GGCC	1 cut(s)	207
HapII	CCGG	1 cut(s)	60
Hin1II	CATG	4 cut(s)	88, 385, 442, 573
HincII	GTYRAC	1 cut(s)	201
HindII	GTYRAC	1 cut(s)	201
HinfI	GANTC	1 cut(s)	21
HpaII	CCGG	1 cut(s)	60
HphI	GGTGA	1 cut(s)	25
Hpy166II	GTNNAC	3 cut(s)	6, 201, 411
Hpy188III	TCNNGA	2 cut(s)	11, 432
Hpy8I	GTNNAC	3 cut(s)	6, 201, 411
HpyAV	CCTTC	2 cut(s)	184, 382
HpyCH4IV	ACGT	1 cut(s)	233
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 575, 614
HpyF3I	CTNAG	2 cut(s)	401, 456
HpySE526I	ACGT	1 cut(s)	233
Hsp92II	CATG	4 cut(s)	88, 385, 442, 573
Kzo9I	GATC	3 cut(s)	209, 309, 459
LmnI	GCTCC	2 cut(s)	193, 622
LpnPI	CCDG	9 cut(s)	73, 189, 228, 277, 304, 497, 539, 543, 558
Lsp1109I	GCAGC	2 cut(s)	602, 617
LweI	GCATC	2 cut(s)	241, 248
MaeI	CTAG	1 cut(s)	597
MaeII	ACGT	1 cut(s)	233
MaeIII	GTNAC	4 cut(s)	31, 229, 286, 322
MalI	GATC	3 cut(s)	211, 311, 461
MbiI	CCGCTC	2 cut(s)	38, 196
MboI	GATC	3 cut(s)	209, 309, 459
MboII	GAAGA	2 cut(s)	272, 527
MfeI	CAATTG	1 cut(s)	638
MflI	RGATCY	1 cut(s)	309
MhlI	GDGCHC	2 cut(s)	274, 619
MluCI	AATT	4 cut(s)	167, 317, 485, 638
MmeI	TCCRAC	1 cut(s)	644
MnlI	CCTC	7 cut(s)	38, 64, 67, 166, 241, 335, 475
Mph1103I	ATGCAT	1 cut(s)	479
MseI	TTAA	2 cut(s)	525, 646
MslI	CAYNNNNRTG	1 cut(s)	98
MspI	CCGG	1 cut(s)	60
MspR9I	CCNGG	1 cut(s)	292
MunI	CAATTG	1 cut(s)	638
Mva1269I	GAATGC	2 cut(s)	111, 546
MvaI	CCWGG	1 cut(s)	292
MwoI	GCNNNNNNNGC	3 cut(s)	50, 575, 614
NcoI	CCATGG	1 cut(s)	84
NdeII	GATC	3 cut(s)	209, 309, 459
NlaIII	CATG	4 cut(s)	88, 385, 442, 573
NlaIV	GGNNCC	2 cut(s)	311, 618
NmuCI	GTSAC	2 cut(s)	31, 322
NsiI	ATGCAT	1 cut(s)	479
NspI	RCATGY	3 cut(s)	385, 442, 573
OliI	CACNNNNGTG	1 cut(s)	98
PaeI	GCATGC	1 cut(s)	573
PctI	GAATGC	2 cut(s)	111, 546
PfeI	GAWTC	1 cut(s)	21
PflMI	CCANNNNNTGG	1 cut(s)	557
PkrI	GCNGC	2 cut(s)	592, 607
Psp1406I	AACGTT	1 cut(s)	233
Psp6I	CCWGG	1 cut(s)	290
PspGI	CCWGG	1 cut(s)	290
PspN4I	GGNNCC	2 cut(s)	311, 618
PspPI	GGNCC	1 cut(s)	88
PstI	CTGCAG	1 cut(s)	592
PsuI	RGATCY	1 cut(s)	309
RsaI	GTAC	2 cut(s)	412, 425
RsaNI	GTAC	2 cut(s)	411, 424
RseI	CAYNNNNRTG	1 cut(s)	98
SaqAI	TTAA	2 cut(s)	525, 646
SatI	GCNGC	2 cut(s)	591, 606
Sau3AI	GATC	3 cut(s)	209, 309, 459
Sau96I	GGNCC	1 cut(s)	88
ScrFI	CCNGG	1 cut(s)	292
SduI	GDGCHC	2 cut(s)	274, 619
SetI	ASST	5 cut(s)	236, 277, 346, 393, 502
SfaNI	GCATC	2 cut(s)	241, 248
SfcI	CTRYAG	1 cut(s)	588
SinI	GGWCC	1 cut(s)	88
SmiMI	CAYNNNNRTG	1 cut(s)	98
SmlI	CTYRAG	1 cut(s)	445
SmoI	CTYRAG	1 cut(s)	445
SphI	GCATGC	1 cut(s)	573
Sse9I	AATT	4 cut(s)	167, 317, 485, 638
SsiI	CCGC	3 cut(s)	36, 91, 196
SspMI	CTAG	1 cut(s)	597
StyD4I	CCNGG	1 cut(s)	290
StyI	CCWWGG	3 cut(s)	84, 255, 610
TaiI	ACGT	1 cut(s)	236
TaqI	TCGA	2 cut(s)	12, 340
TasI	AATT	4 cut(s)	167, 317, 485, 638
TatI	WGTACW	1 cut(s)	410
TfiI	GAWTC	1 cut(s)	21
Tru1I	TTAA	2 cut(s)	525, 646
Tru9I	TTAA	2 cut(s)	525, 646
TscAI	CASTG	1 cut(s)	537
TseFI	GTSAC	2 cut(s)	31, 322
TseI	GCWGC	2 cut(s)	590, 605
Tsp45I	GTSAC	2 cut(s)	31, 322
TspDTI	ATGAA	1 cut(s)	203
TspGWI	ACGGA	1 cut(s)	146
TspRI	CASTG	1 cut(s)	537
Van91I	CCANNNNNTGG	1 cut(s)	557
VpaK11BI	GGWCC	1 cut(s)	88
XceI	RCATGY	3 cut(s)	385, 442, 573
XspI	CTAG	1 cut(s)	597
Zsp2I	ATGCAT	1 cut(s)	479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.