RLG00000017453

Heterogeneous nuclear ribonucleoprotein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
16966011 .. 16969037
3027 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017453

Sequence Viewer

Length: 1152 bp
ATGGACCGCAAGCTTGTGGTTTTGGGCATTCCATGGGATATTGATACAGACGGGTTGAGAGAGTATATGAGCAAATATGGGGAATTGGAGGATTGTATTGTAATGAAGGAGCGGTCAACTGGCCGATCTCGTGGATTTGGATATGTAACGTTTGCATCAGCTGAGGATGCCAAGAGCGTGTCATCAAGTGAGCACTTTCTTGGTAATAGAATGCTGGAAGTTAAAGTGGCTACCCCAAAGGAAGAGATGAGAGCACCTGCAAGAAAAGTTACCAGGATATTTGTTGCAAGGATCCCACAATCTGTGACAGAAGCAAACTTTCGAGGTCATTTTGGGAAATATGGAGAGATAACAGATTTATACATGCCGAAGGATCAAGGCTCAAAAATGCATCGAGGAATTGGGTTTATTACCTTTGAAAATGCAGACTCCGTGGAAAATTTAATGGCTGATACTCATGAATTGGGGGGTTCCAATGTAGTTGTTGATCGAGCAACACCCAAGGCAAATGACTTTAAACCAGTGGGCAGAATGCCAGCACCACAGGGTGGATATGGTGCATACAATGCGTATATCTCTGCAGCCACTAGATATGCAGCCCTTGGGGCTCCGACTTTGTATGATAATCCACCACATCCAGGGCCCGTTTATGGAAGAGGGGAATCTGCTCGAGGATTGAGCAAAAAGATTTTTGTTGGAAGGCTGCCTCAGGAGGCAACTGCTGAAGATCTCCGCCAGTATTTTGGCAGATTTGGCCGTATATTAGATGTCTATGTTCCCAGGGATCCCAAAAGAACTGGCCATAGAGGATTTGGTTTTGTAACATTCGGGGAAGACGGTGTAGCAGATCGTGTATCACGAAGATCTCATGAGATCTGTGGACAGCAGGTTGCAATAGATACAGCCACACCTCTTGATGAAGCTGGTACAAGTGGGAACTTTATGATGAACAATGTAGAACCATATGGCGGATATGGTGGTCCTATGCGCCCTTATGGCAGGATGTATGGAAGTCTGGATTTTGATGACGTGAGTATATCTCATATGAATTTTATAATATGTTCGCCTGATGGTGATCACCCGTATGCAAGATCTCTCTTCATGCATACACGATTTTCATCAACTAATGGTTTCCAGAATACCGGTTTATAG

Protein Analysis

384

Amino Acids

42.33

Weight (kDa)

7.16

Isoelectric Point (pI)

34.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 5 - 60 2.1e-12 RNA recognition motif
RRM_1 PF00076 93 - 153 2.1e-11 RNA recognition motif
RRM_1 PF00076 230 - 278 1.1e-12 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1055
AarI CACCTGC 1 cut(s) 265
Acc36I ACCTGC 2 cut(s) 265, 877
AccB7I CCANNNNNTGG 1 cut(s) 548
AccBSI CCGCTC 1 cut(s) 112
AciI CCGC 4 cut(s) 7, 112, 733, 969
AclI AACGTT 1 cut(s) 149
AclWI GGATC 5 cut(s) 286, 299, 381, 779, 792
AcoI YGGCCR 3 cut(s) 121, 754, 799
AcsI RAATTY 2 cut(s) 439, 1048
AcuI CTGAAG 1 cut(s) 744
AdeI CACNNNGTG 1 cut(s) 548
AfaI GTAC 1 cut(s) 928
AfiI CCNNNNNNNGG 4 cut(s) 548, 638, 650, 968
AgeI ACCGGT 1 cut(s) 1142
AgsI TTSAA 1 cut(s) 419
AjiI CACGTC 1 cut(s) 1030
AjnI CCWGG 3 cut(s) 272, 637, 779
AluBI AGCT 3 cut(s) 13, 161, 923
AluI AGCT 3 cut(s) 13, 161, 923
Alw21I GWGCWC 2 cut(s) 195, 256
AlwI GGATC 5 cut(s) 286, 299, 381, 779, 792
Ama87I CYCGRG 1 cut(s) 669
AoxI GGCC 4 cut(s) 121, 641, 754, 799
ApaI GGGCCC 1 cut(s) 645
ApeKI GCWGC 3 cut(s) 581, 596, 703
ApoI RAATTY 2 cut(s) 439, 1048
AsiGI ACCGGT 1 cut(s) 1142
AspLEI GCGC 1 cut(s) 990
AspS9I GGNCC 4 cut(s) 4, 641, 642, 980
AsuHPI GGTGA 2 cut(s) 1070, 1085
AvaI CYCGRG 1 cut(s) 669
AvaII GGWCC 2 cut(s) 4, 980
AxyI CCTNAGG 1 cut(s) 708
BaeGI GKGCMC 1 cut(s) 645
BalI TGGCCA 1 cut(s) 801
BamHI GGATCC 2 cut(s) 291, 784
BanII GRGCYC 2 cut(s) 610, 645
BauI CACGAG 1 cut(s) 129
BbsI GAAGAC 1 cut(s) 840
Bbv12I GWGCWC 2 cut(s) 195, 256
BbvCI CCTCAGC 1 cut(s) 162
BbvI GCAGC 3 cut(s) 593, 608, 690
BccI CCATC 1 cut(s) 1064
BceAI ACGGC 1 cut(s) 741
BciT130I CCWGG 3 cut(s) 274, 639, 781
BclI TGATCA 1 cut(s) 1075
BfaI CTAG 1 cut(s) 588
BfmI CTRYAG 1 cut(s) 579
BfuAI ACCTGC 2 cut(s) 265, 877
BglI GCCNNNNNGGC 2 cut(s) 605, 996
BglII AGATCT 4 cut(s) 727, 863, 873, 1091
BisI GCNGC 3 cut(s) 582, 597, 704
BlsI GCNGC 3 cut(s) 583, 598, 705
Bme1390I CCNGG 3 cut(s) 274, 639, 781
Bme18I GGWCC 2 cut(s) 4, 980
BmeT110I CYCGRG 1 cut(s) 669
BmgBI CACGTC 1 cut(s) 1030
BmgT120I GGNCC 4 cut(s) 4, 641, 642, 980
BmiI GGNNCC 5 cut(s) 293, 472, 609, 643, 786
BmrFI CCNGG 3 cut(s) 274, 639, 781
BmsI GCATC 3 cut(s) 157, 164, 400
BpiI GAAGAC 1 cut(s) 840
BplI GAGNNNNNCTC 2 cut(s) 1024, 1056
Bpu10I CCTNAGC 1 cut(s) 162
BsaBI GATNNNNATC 2 cut(s) 1074, 1117
BsaJI CCNNGG 7 cut(s) 32, 432, 501, 601, 638, 779, 780
BsaWI WCCGGW 1 cut(s) 1142
Bsc4I CCNNNNNNNGG 4 cut(s) 548, 638, 650, 968
Bse118I RCCGGY 1 cut(s) 1142
Bse1I ACTGG 4 cut(s) 124, 521, 736, 802
Bse21I CCTNAGG 1 cut(s) 708
Bse8I GATNNNNATC 2 cut(s) 1074, 1117
BseBI CCWGG 3 cut(s) 274, 639, 781
BseDI CCNNGG 7 cut(s) 32, 432, 501, 601, 638, 779, 780
BseGI GGATG 3 cut(s) 172, 634, 1008
BseJI GATNNNNATC 2 cut(s) 1074, 1117
BseLI CCNNNNNNNGG 4 cut(s) 548, 638, 650, 968
BseMII CTCAG 2 cut(s) 153, 722
BseNI ACTGG 4 cut(s) 124, 521, 736, 802
BseSI GKGCMC 1 cut(s) 645
BseXI GCAGC 3 cut(s) 593, 608, 690
BshFI GGCC 4 cut(s) 123, 643, 756, 801
BshTI ACCGGT 1 cut(s) 1142
BsiHKAI GWGCWC 2 cut(s) 195, 256
BsiHKCI CYCGRG 1 cut(s) 669
BsiSI CCGG 1 cut(s) 1143
BslI CCNNNNNNNGG 4 cut(s) 548, 638, 650, 968
BsmI GAATGC 3 cut(s) 27, 216, 537
BsnI GGCC 4 cut(s) 123, 643, 756, 801
BsoBI CYCGRG 1 cut(s) 669
Bsp120I GGGCCC 1 cut(s) 641
Bsp1286I GDGCHC 4 cut(s) 195, 256, 610, 645
Bsp19I CCATGG 1 cut(s) 32
BspACI CCGC 4 cut(s) 7, 112, 733, 969
BspANI GGCC 4 cut(s) 123, 643, 756, 801
BspCNI CTCAG 2 cut(s) 154, 721
BspHI TCATGA 2 cut(s) 457, 868
BspLI GGNNCC 5 cut(s) 293, 472, 609, 643, 786
BspMAI CTGCAG 1 cut(s) 583
BspMI ACCTGC 2 cut(s) 265, 877
BspPI GGATC 5 cut(s) 286, 299, 381, 779, 792
BsrBI CCGCTC 1 cut(s) 112
BsrFI RCCGGY 1 cut(s) 1142
BsrI ACTGG 4 cut(s) 124, 521, 736, 802
BssAI RCCGGY 1 cut(s) 1142
BssECI CCNNGG 7 cut(s) 32, 432, 501, 601, 638, 779, 780
BssSI CACGAG 1 cut(s) 129
BssT1I CCWWGG 3 cut(s) 32, 501, 601
Bst2BI CACGAG 1 cut(s) 129
Bst2UI CCWGG 3 cut(s) 274, 639, 781
Bst4CI ACNGT 1 cut(s) 839
Bst6I CTCTTC 3 cut(s) 237, 649, 1103
BstAPI GCANNNNNTGC 1 cut(s) 566
BstC8I GCNNGC 2 cut(s) 11, 537
BstDEI CTNAG 2 cut(s) 162, 708
BstDSI CCRYGG 2 cut(s) 32, 432
BstF5I GGATG 3 cut(s) 172, 634, 1008
BstHHI GCGC 1 cut(s) 990
BstMWI GCNNNNNNNGC 5 cut(s) 167, 566, 605, 753, 996
BstNI CCWGG 3 cut(s) 274, 639, 781
BstNSI RCATGY 1 cut(s) 367
BstSCI CCNGG 3 cut(s) 272, 637, 779
BstSFI CTRYAG 1 cut(s) 579
BstSLI GKGCMC 1 cut(s) 645
BstV1I GCAGC 3 cut(s) 593, 608, 690
BstV2I GAAGAC 1 cut(s) 840
BstX2I RGATCY 6 cut(s) 291, 727, 784, 863, 873, 1091
BstXI CCANNNNNNTGG 1 cut(s) 743
BstYI RGATCY 6 cut(s) 291, 727, 784, 863, 873, 1091
Bsu36I CCTNAGG 1 cut(s) 708
BsuRI GGCC 4 cut(s) 123, 643, 756, 801
BtgI CCRYGG 2 cut(s) 32, 432
BtrI CACGTC 1 cut(s) 1030
BtsCI GGATG 3 cut(s) 172, 634, 1008
BtsIMutI CAGTG 1 cut(s) 528
BveI ACCTGC 2 cut(s) 265, 877
Cac8I GCNNGC 2 cut(s) 11, 537
CciI TCATGA 2 cut(s) 457, 868
CfoI GCGC 1 cut(s) 990
Cfr10I RCCGGY 1 cut(s) 1142
Cfr13I GGNCC 4 cut(s) 4, 641, 642, 980
Csp6I GTAC 1 cut(s) 927
CspAI ACCGGT 1 cut(s) 1142
CspCI CAANNNNNGTGG 2 cut(s) 895, 930
CviAII CATG 5 cut(s) 33, 364, 458, 869, 1102
CviQI GTAC 1 cut(s) 927
DdeI CTNAG 2 cut(s) 162, 708
DraI TTTAAA 1 cut(s) 517
DraIII CACNNNGTG 1 cut(s) 548
EaeI YGGCCR 3 cut(s) 121, 754, 799
Eam1104I CTCTTC 3 cut(s) 237, 649, 1103
EarI CTCTTC 3 cut(s) 237, 649, 1103
EciI GGCGGA 2 cut(s) 722, 984
Eco130I CCWWGG 3 cut(s) 32, 501, 601
Eco24I GRGCYC 2 cut(s) 610, 645
Eco47I GGWCC 2 cut(s) 4, 980
Eco57I CTGAAG 1 cut(s) 744
Eco81I CCTNAGG 1 cut(s) 708
Eco88I CYCGRG 1 cut(s) 669
EcoO109I RGGNCCY 1 cut(s) 641
EcoRII CCWGG 3 cut(s) 272, 637, 779
EcoT14I CCWWGG 3 cut(s) 32, 501, 601
EcoT22I ATGCAT 2 cut(s) 393, 1107
EcoT38I GRGCYC 2 cut(s) 610, 645
ErhI CCWWGG 3 cut(s) 32, 501, 601
FaeI CATG 5 cut(s) 36, 367, 461, 872, 1105
FatI CATG 5 cut(s) 32, 363, 457, 868, 1101
FauNDI CATATG 2 cut(s) 964, 1044
FbaI TGATCA 1 cut(s) 1075
Fnu4HI GCNGC 3 cut(s) 582, 597, 704
FokI GGATG 3 cut(s) 179, 621, 1015
FriOI GRGCYC 2 cut(s) 610, 645
Fsp4HI GCNGC 3 cut(s) 582, 597, 704
FspBI CTAG 1 cut(s) 588
GlaI GCGC 1 cut(s) 989
GluI GCNGC 3 cut(s) 582, 597, 704
HaeIII GGCC 4 cut(s) 123, 643, 756, 801
HapII CCGG 1 cut(s) 1143
HhaI GCGC 1 cut(s) 990
Hin1II CATG 5 cut(s) 36, 367, 461, 872, 1105
Hin6I GCGC 1 cut(s) 988
HinP1I GCGC 1 cut(s) 988
HincII GTYRAC 1 cut(s) 117
HindII GTYRAC 1 cut(s) 117
HindIII AAGCTT 1 cut(s) 11
HinfI GANTC 2 cut(s) 428, 662
HpaII CCGG 1 cut(s) 1143
HphI GGTGA 2 cut(s) 1070, 1085
Hpy166II GTNNAC 2 cut(s) 117, 881
Hpy188I TCNGA 1 cut(s) 612
Hpy188III TCNNGA 7 cut(s) 458, 710, 858, 869, 914, 1016, 1135
Hpy8I GTNNAC 2 cut(s) 117, 881
HpyAV CCTTC 3 cut(s) 100, 364, 693
HpyCH4III ACNGT 1 cut(s) 839
HpyCH4IV ACGT 2 cut(s) 149, 1029
HpyF10VI GCNNNNNNNGC 5 cut(s) 167, 566, 605, 753, 996
HpyF3I CTNAG 2 cut(s) 162, 708
HpySE526I ACGT 2 cut(s) 149, 1029
Hsp92II CATG 5 cut(s) 36, 367, 461, 872, 1105
HspAI GCGC 1 cut(s) 988
Ksp22I TGATCA 1 cut(s) 1075
LmnI GCTCC 2 cut(s) 109, 613
Lsp1109I GCAGC 3 cut(s) 593, 608, 690
LweI GCATC 3 cut(s) 157, 164, 400
MaeI CTAG 1 cut(s) 588
MaeII ACGT 2 cut(s) 149, 1029
MaeIII GTNAC 4 cut(s) 145, 268, 304, 820
MbiI CCGCTC 1 cut(s) 112
MboII GAAGA 6 cut(s) 254, 666, 737, 845, 873, 1090
MflI RGATCY 6 cut(s) 291, 727, 784, 863, 873, 1091
MhlI GDGCHC 4 cut(s) 195, 256, 610, 645
MlsI TGGCCA 1 cut(s) 801
MluCI AATT 5 cut(s) 83, 399, 439, 461, 1048
MluNI TGGCCA 1 cut(s) 801
MlyI GAGTC 1 cut(s) 422
MmeI TCCRAC 2 cut(s) 635, 676
Mox20I TGGCCA 1 cut(s) 801
Mph1103I ATGCAT 2 cut(s) 393, 1107
MscI TGGCCA 1 cut(s) 801
MseI TTAA 3 cut(s) 222, 443, 516
MslI CAYNNNNRTG 1 cut(s) 1083
Msp20I TGGCCA 1 cut(s) 801
MspA1I CMGCKG 1 cut(s) 161
MspI CCGG 1 cut(s) 1143
MspR9I CCNGG 3 cut(s) 274, 639, 781
Mva1269I GAATGC 3 cut(s) 27, 216, 537
MvaI CCWGG 3 cut(s) 274, 639, 781
MwoI GCNNNNNNNGC 5 cut(s) 167, 566, 605, 753, 996
NcoI CCATGG 1 cut(s) 32
NdeI CATATG 2 cut(s) 964, 1044
NlaIII CATG 5 cut(s) 36, 367, 461, 872, 1105
NlaIV GGNNCC 5 cut(s) 293, 472, 609, 643, 786
NmuCI GTSAC 1 cut(s) 304
NsiI ATGCAT 2 cut(s) 393, 1107
NspI RCATGY 1 cut(s) 367
PaeR7I CTCGAG 1 cut(s) 669
PagI TCATGA 2 cut(s) 457, 868
PaqCI CACCTGC 1 cut(s) 265
PasI CCCWGGG 1 cut(s) 780
PcsI WCGNNNNNNNCGW 1 cut(s) 856
PctI GAATGC 3 cut(s) 27, 216, 537
PfeI GAWTC 1 cut(s) 662
PflMI CCANNNNNTGG 1 cut(s) 548
PinAI ACCGGT 1 cut(s) 1142
PkrI GCNGC 3 cut(s) 583, 598, 705
PleI GAGTC 1 cut(s) 422
PpsI GAGTC 1 cut(s) 422
PsiI TTATAA 1 cut(s) 1055
Psp1406I AACGTT 1 cut(s) 149
Psp6I CCWGG 3 cut(s) 272, 637, 779
PspGI CCWGG 3 cut(s) 272, 637, 779
PspN4I GGNNCC 5 cut(s) 293, 472, 609, 643, 786
PspOMI GGGCCC 1 cut(s) 641
PspPI GGNCC 4 cut(s) 4, 641, 642, 980
PspXI VCTCGAGB 1 cut(s) 669
PstI CTGCAG 1 cut(s) 583
PsuI RGATCY 6 cut(s) 291, 727, 784, 863, 873, 1091
PvuII CAGCTG 1 cut(s) 161
RsaI GTAC 1 cut(s) 928
RsaNI GTAC 1 cut(s) 927
RseI CAYNNNNRTG 1 cut(s) 1083
SaqAI TTAA 3 cut(s) 222, 443, 516
SatI GCNGC 3 cut(s) 582, 597, 704
Sau96I GGNCC 4 cut(s) 4, 641, 642, 980
SchI GAGTC 1 cut(s) 422
ScrFI CCNGG 3 cut(s) 274, 639, 781
SduI GDGCHC 4 cut(s) 195, 256, 610, 645
SfaNI GCATC 3 cut(s) 157, 164, 400
SfcI CTRYAG 1 cut(s) 579
Sfr274I CTCGAG 1 cut(s) 669
SinI GGWCC 2 cut(s) 4, 980
SlaI CTCGAG 1 cut(s) 669
SmiMI CAYNNNNRTG 1 cut(s) 1083
SmlI CTYRAG 1 cut(s) 669
SmoI CTYRAG 1 cut(s) 669
Sse9I AATT 5 cut(s) 83, 399, 439, 461, 1048
SsiI CCGC 4 cut(s) 7, 112, 733, 969
SspMI CTAG 1 cut(s) 588
StyD4I CCNGG 3 cut(s) 272, 637, 779
StyI CCWWGG 3 cut(s) 32, 501, 601
TaaI ACNGT 1 cut(s) 839
TaiI ACGT 2 cut(s) 152, 1032
TaqI TCGA 4 cut(s) 322, 394, 490, 670
TasI AATT 5 cut(s) 83, 399, 439, 461, 1048
TfiI GAWTC 1 cut(s) 662
Tru1I TTAA 3 cut(s) 222, 443, 516
Tru9I TTAA 3 cut(s) 222, 443, 516
TscAI CASTG 1 cut(s) 528
TseFI GTSAC 1 cut(s) 304
TseI GCWGC 3 cut(s) 581, 596, 703
Tsp45I GTSAC 1 cut(s) 304
TspDTI ATGAA 7 cut(s) 119, 474, 933, 962, 1061, 1090, 1107
TspGWI ACGGA 1 cut(s) 421
TspRI CASTG 1 cut(s) 528
Van91I CCANNNNNTGG 1 cut(s) 548
VpaK11BI GGWCC 2 cut(s) 4, 980
XapI RAATTY 2 cut(s) 439, 1048
XceI RCATGY 1 cut(s) 367
XcmI CCANNNNNNNNNTGG 1 cut(s) 809
XhoI CTCGAG 1 cut(s) 669
XspI CTAG 1 cut(s) 588
Zsp2I ATGCAT 2 cut(s) 393, 1107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.