Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000594.1

Orthogroup ID

OG0003388

Physical Location & Seq

Genomic Coordinates Reverse (-)

218088 .. 219806

Gene Structure 1719 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000594.1_g000060.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

atgcaccgccacgcaccgtcccaatacagcatcagaagctccagaagctggggactgaagcatatcagtcccacatcgaaaacgtggagaagatcagctctctcttcacctaaaaaaggtagcggaaactctgagaatatcataggtgaatttgttagaagtgagatcgagccaattcccttagagcgaagcactattgacgaaatctgcgaagactcagaactcggagctgactcagccggtcgagcgtgttgggtggaatcagaccaacaaggccaacaccgggaaggtgacatgagtacacatacagctggtttctgtcgctgtcagagctccaggtttgaagaagctgagctatggcgagattacgggcattcagttcgagtagttgggaagataagggttttgggcattccatgggatattgatacagacgggttgagagagtatatgagcaaatatgtggaattggaggattgtattgtaatgaaggagcggtcaactggccgatctcgtcgatttggatatgtaaagtttgcatcagctgaagatgccaagcttagttatcttatagcttctggttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005849 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

RRM_1

Protein Analysis

194

Amino Acids

21.94

Weight (kDa)

6.6

Isoelectric Point (pI)

74.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003388)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36960 AT4G36960
fragaria_vesca	FvH4_1g16100 FvH4_1g16100 FvH4_1g16100 FvH4_1g16100 FvH4_1g16100 FvH4_1g16100 FvH4_1g16100
malus_domestica	MD02G1172600.v1.1 MD15G1284600.v1.1
prunus_persica	Prupe.7G132900_v2.0.a1
pyrus_communis	pycom02g13910 pycom15g24730
rosa_chinensis	RchiOBHm_Chr2g0105721
rosa_laevigata	RLG00000017453
rosa_multiflora	Rmu_sc0000594.1_g000060 Rmu_sc0001051.1_g000061 Rmu_sc0039055.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002090 Rroxscaffold_1G00038100 Rroxscaffold_2G00137950 Rroxscaffold_5G00348070
rosa_rugosa	Rorug01G0167000 Rorug02G0129800 Rorug02G0283100
rosa_samantha	Rh2AG181200 Rh2BG190300 Rh2CG185400 Rh5BG197900 Rh5BG450300 Rh5CG472700 Rh5DG291600 Rh5DG464000 Rh6AG247300
rosa_wichuraiana	Rw2G014170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	48
AccBSI	CCGCTC	1 cut(s)	496
AciI	CCGC	3 cut(s)	7, 123, 496
AcoI	YGGCCR	1 cut(s)	505
AcsI	RAATTY	1 cut(s)	149
AcuI	CTGAAG	2 cut(s)	77, 567
AfaI	GTAC	1 cut(s)	301
AfiI	CCNNNNNNNGG	3 cut(s)	48, 116, 283
AgsI	TTSAA	1 cut(s)	344
AjnI	CCWGG	1 cut(s)	335
Alw21I	GWGCWC	1 cut(s)	335
AlwNI	CAGNNNCTG	1 cut(s)	48
AoxI	GGCC	2 cut(s)	274, 505
ApoI	RAATTY	1 cut(s)	149
AsuC2I	CCSGG	1 cut(s)	284
AsuHPI	GGTGA	3 cut(s)	99, 158, 302
BanII	GRGCYC	1 cut(s)	335
BbsI	GAAGAC	1 cut(s)	219
Bbv12I	GWGCWC	1 cut(s)	335
BcgI	CGANNNNNNTGC	2 cut(s)	362, 396
BciT130I	CCWGG	1 cut(s)	337
BcnI	CCSGG	1 cut(s)	284
BlpI	GCTNAGC	1 cut(s)	351
Bme1390I	CCNGG	2 cut(s)	284, 337
BmrFI	CCNGG	2 cut(s)	284, 337
BmsI	GCATC	3 cut(s)	39, 541, 548
BpiI	GAAGAC	1 cut(s)	219
BpmI	CTGGAG	2 cut(s)	25, 319
Bpu1102I	GCTNAGC	1 cut(s)	351
BpuMI	CCSGG	1 cut(s)	284
BsaJI	CCNNGG	1 cut(s)	416
Bsc4I	CCNNNNNNNGG	3 cut(s)	48, 116, 283
Bse118I	RCCGGY	1 cut(s)	239
Bse1I	ACTGG	1 cut(s)	508
BseBI	CCWGG	1 cut(s)	337
BseDI	CCNNGG	1 cut(s)	416
BseLI	CCNNNNNNNGG	3 cut(s)	48, 116, 283
BseMII	CTCAG	4 cut(s)	123, 231, 249, 342
BseNI	ACTGG	1 cut(s)	508
BseYI	CCCAGC	1 cut(s)	48
Bsh1285I	CGRYCG	1 cut(s)	244
BshFI	GGCC	2 cut(s)	276, 507
BsiEI	CGRYCG	1 cut(s)	244
BsiHKAI	GWGCWC	1 cut(s)	335
BsiSI	CCGG	2 cut(s)	240, 283
BslFI	GGGAC	3 cut(s)	4, 54, 66
BslI	CCNNNNNNNGG	3 cut(s)	48, 116, 283
BsmFI	GGGAC	3 cut(s)	4, 54, 66
BsmI	GAATGC	2 cut(s)	373, 411
BsnI	GGCC	2 cut(s)	276, 507
Bsp1286I	GDGCHC	1 cut(s)	335
Bsp143I	GATC	3 cut(s)	92, 165, 509
Bsp1720I	GCTNAGC	1 cut(s)	351
Bsp19I	CCATGG	1 cut(s)	416
BspACI	CCGC	3 cut(s)	7, 123, 496
BspANI	GGCC	2 cut(s)	276, 507
BspCNI	CTCAG	4 cut(s)	124, 230, 248, 343
BsrBI	CCGCTC	1 cut(s)	496
BsrFI	RCCGGY	1 cut(s)	239
BsrI	ACTGG	1 cut(s)	508
BssAI	RCCGGY	1 cut(s)	239
BssECI	CCNNGG	1 cut(s)	416
BssMI	GATC	3 cut(s)	92, 165, 509
BssT1I	CCWWGG	1 cut(s)	416
Bst2UI	CCWGG	1 cut(s)	337
Bst4CI	ACNGT	1 cut(s)	18
Bst6I	CTCTTC	1 cut(s)	109
BstDEI	CTNAG	6 cut(s)	132, 181, 217, 235, 351, 560
BstDSI	CCRYGG	1 cut(s)	416
BstENI	CCTNNNNNAGG	1 cut(s)	114
BstKTI	GATC	3 cut(s)	95, 168, 512
BstMBI	GATC	3 cut(s)	92, 165, 509
BstMCI	CGRYCG	1 cut(s)	244
BstMWI	GCNNNNNNNGC	6 cut(s)	36, 45, 236, 245, 330, 551
BstNI	CCWGG	1 cut(s)	337
BstSCI	CCNGG	2 cut(s)	282, 335
BstV2I	GAAGAC	1 cut(s)	219
BsuRI	GGCC	2 cut(s)	276, 507
BtgI	CCRYGG	1 cut(s)	416
CaiI	CAGNNNCTG	1 cut(s)	48
Cfr10I	RCCGGY	1 cut(s)	239
Csp6I	GTAC	1 cut(s)	300
CviAII	CATG	2 cut(s)	295, 417
CviQI	GTAC	1 cut(s)	300
DdeI	CTNAG	6 cut(s)	132, 181, 217, 235, 351, 560
DpnI	GATC	3 cut(s)	94, 167, 511
DpnII	GATC	3 cut(s)	92, 165, 509
EaeI	YGGCCR	1 cut(s)	505
Eam1104I	CTCTTC	1 cut(s)	109
EarI	CTCTTC	1 cut(s)	109
Ecl136II	GAGCTC	1 cut(s)	333
Eco130I	CCWWGG	1 cut(s)	416
Eco24I	GRGCYC	1 cut(s)	335
Eco53kI	GAGCTC	1 cut(s)	333
Eco57I	CTGAAG	2 cut(s)	77, 567
EcoICRI	GAGCTC	1 cut(s)	333
EcoNI	CCTNNNNNAGG	1 cut(s)	114
EcoRII	CCWGG	1 cut(s)	335
EcoT14I	CCWWGG	1 cut(s)	416
EcoT38I	GRGCYC	1 cut(s)	335
ErhI	CCWWGG	1 cut(s)	416
FaeI	CATG	2 cut(s)	298, 420
FaqI	GGGAC	3 cut(s)	4, 54, 66
FatI	CATG	2 cut(s)	294, 416
FriOI	GRGCYC	1 cut(s)	335
GsaI	CCCAGC	1 cut(s)	52
GsuI	CTGGAG	2 cut(s)	25, 319
HaeIII	GGCC	2 cut(s)	276, 507
HapII	CCGG	2 cut(s)	240, 283
Hin1II	CATG	2 cut(s)	298, 420
HincII	GTYRAC	1 cut(s)	501
HindII	GTYRAC	1 cut(s)	501
HindIII	AAGCTT	1 cut(s)	557
HinfI	GANTC	3 cut(s)	215, 233, 260
HpaII	CCGG	2 cut(s)	240, 283
HphI	GGTGA	3 cut(s)	99, 158, 302
Hpy166II	GTNNAC	2 cut(s)	302, 501
Hpy188I	TCNGA	6 cut(s)	35, 133, 220, 227, 265, 330
Hpy188III	TCNNGA	1 cut(s)	42
Hpy8I	GTNNAC	2 cut(s)	302, 501
Hpy99I	CGWCG	1 cut(s)	519
HpyAV	CCTTC	2 cut(s)	281, 484
HpyCH4III	ACNGT	1 cut(s)	18
HpyCH4IV	ACGT	1 cut(s)	83
HpyCH4V	TGCA	2 cut(s)	4, 539
HpyF10VI	GCNNNNNNNGC	6 cut(s)	36, 45, 236, 245, 330, 551
HpyF3I	CTNAG	6 cut(s)	132, 181, 217, 235, 351, 560
HpySE526I	ACGT	1 cut(s)	83
Hsp92II	CATG	2 cut(s)	298, 420
Kzo9I	GATC	3 cut(s)	92, 165, 509
LmnI	GCTCC	4 cut(s)	44, 227, 338, 493
LpnPI	CCDG	9 cut(s)	34, 55, 253, 296, 297, 322, 349, 489, 564
LweI	GCATC	3 cut(s)	39, 541, 548
MaeII	ACGT	1 cut(s)	83
MaeIII	GTNAC	1 cut(s)	290
MalI	GATC	3 cut(s)	94, 167, 511
MbiI	CCGCTC	1 cut(s)	496
MboI	GATC	3 cut(s)	92, 165, 509
MboII	GAAGA	6 cut(s)	96, 102, 224, 356, 406, 560
MhlI	GDGCHC	1 cut(s)	335
MluCI	AATT	3 cut(s)	149, 174, 467
MlyI	GAGTC	2 cut(s)	209, 227
MnlI	CCTC	1 cut(s)	466
MspA1I	CMGCKG	2 cut(s)	311, 545
MspI	CCGG	2 cut(s)	240, 283
MspR9I	CCNGG	2 cut(s)	284, 337
Mva1269I	GAATGC	2 cut(s)	373, 411
MvaI	CCWGG	1 cut(s)	337
MwoI	GCNNNNNNNGC	6 cut(s)	36, 45, 236, 245, 330, 551
NciI	CCSGG	1 cut(s)	284
NcoI	CCATGG	1 cut(s)	416
NdeII	GATC	3 cut(s)	92, 165, 509
NlaIII	CATG	2 cut(s)	298, 420
NmuCI	GTSAC	1 cut(s)	290
PcsI	WCGNNNNNNNCGW	1 cut(s)	207
PctI	GAATGC	2 cut(s)	373, 411
PfeI	GAWTC	1 cut(s)	260
PflMI	CCANNNNNTGG	1 cut(s)	48
PleI	GAGTC	2 cut(s)	209, 227
PpsI	GAGTC	2 cut(s)	209, 227
Psp124BI	GAGCTC	1 cut(s)	335
Psp6I	CCWGG	1 cut(s)	335
PspFI	CCCAGC	1 cut(s)	48
PspGI	CCWGG	1 cut(s)	335
PstNI	CAGNNNCTG	1 cut(s)	48
PvuII	CAGCTG	2 cut(s)	311, 545
RsaI	GTAC	1 cut(s)	301
RsaNI	GTAC	1 cut(s)	300
SacI	GAGCTC	1 cut(s)	335
Sau3AI	GATC	3 cut(s)	92, 165, 509
SchI	GAGTC	2 cut(s)	209, 227
ScrFI	CCNGG	2 cut(s)	284, 337
SduI	GDGCHC	1 cut(s)	335
SfaNI	GCATC	3 cut(s)	39, 541, 548
Sse9I	AATT	3 cut(s)	149, 174, 467
SsiI	CCGC	3 cut(s)	7, 123, 496
SstI	GAGCTC	1 cut(s)	335
StyD4I	CCNGG	2 cut(s)	282, 335
StyI	CCWWGG	1 cut(s)	416
TaaI	ACNGT	1 cut(s)	18
TaiI	ACGT	1 cut(s)	86
TaqI	TCGA	5 cut(s)	77, 168, 244, 382, 517
TasI	AATT	3 cut(s)	149, 174, 467
TatI	WGTACW	1 cut(s)	299
TfiI	GAWTC	1 cut(s)	260
TseFI	GTSAC	1 cut(s)	290
Tsp45I	GTSAC	1 cut(s)	290
TspDTI	ATGAA	1 cut(s)	503
Van91I	CCANNNNNTGG	1 cut(s)	48
XagI	CCTNNNNNAGG	1 cut(s)	114
XapI	RAATTY	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.