Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0003388

Physical Location & Seq

Genomic Coordinates Reverse (-)

15077312 .. 15081444

Gene Structure 4133 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1172600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGACCGTAAGCTCGTGGTTTTGGGCATTCCGTGGGATATCGATACGGAAGGGCTGAAAGAGTATATGGTCAAATTTGGGGAATTGGAGGATTGTATTGTCATGAAGGATCGGTCAACTGGTCGGTCTCGTGGATTTGGATATGCAACATTTGTATCTGCTGAAGATGCGAAGAATGCAGCATCAAGTGAGCACTTTCTTGGCAATCGAATGCTGGAAGTTAAAATAGCTACTCCAAAGGAGGAGATGAGAGCACCTGCAAGAAAAGTTACCAGGATATTTGTTGCAAGGATCCCACAATCTGTGACAGAAGCAAACTTTAGAAGTCATTTTGAGAAATATGGTGAAATAACGGATTTATACATGCCGAAGGATCAAGGCTCAAAAGCACATCGTGGAATTGGGTTTATAACATTTGAAAATGCAGATTCCGTGGAAACATTGATGGCTGATACTCATGAATTAGGCGGTTCCAATGTAGTTGTTGATCGAGCTACACCCAAGGAAGAAGATTTCAGACCAGTTGGAAGAATGGCGCAACAGGGTGGCTATGGTGCATATAATGCTTACATCTCAGCAGCAACTAGATATGCAGCCCTCGGGGCTCCTACTTTGTATGACCATCCTGTACCAGGACCAGCTTTTCCAAGAGGGGAATCTTCTCGAGGACTAGGCAAAAAGATCTTTGTTGGCAGGCTTCCTCAGGAAGCAACCTCTGATGATCTCCGCCAGTATTTTGGGAGATTTGGTCGTATAGTAGATGTCTATGTTCCAAGGGACCCCAAAAGAACTGGGCATAGAGGATTTGGTTTTGTAACTTTTGGGGAAGATGGTGTAGCCGAACGTGTATCACGAAGGTCTCATGAGATTTGTGGCCAGGAGGTTGCAATAGACACAGCCACACCTCCCGAGGATGCTGGTATGAGTGGAAATTTTATGATGAATAATGTAGAGCCCTTTGCCGGCTATGGTGGTCCTATGCGCTCCTATGGCAGGATGTATGGAAGTCTGGATTTTGATGATTGGGGTTATGGAATTGGCAGTGGGGTCGGCGTTGCAAGACCATCAAGAGCAAACTGGAGGTACAGGCCATACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005849 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

RRM_1

Protein Analysis

366

Amino Acids

40.47

Weight (kDa)

7.07

Isoelectric Point (pI)

36.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	5 - 63	1e-11	RNA recognition motif
RRM_1	PF00076	93 - 150	7.5e-12	RNA recognition motif
RRM_1	PF00076	228 - 282	2.4e-13	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003388)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36960 AT4G36960
fragaria_vesca	FvH4_1g16100 FvH4_1g16100 FvH4_1g16100 FvH4_1g16100 FvH4_1g16100 FvH4_1g16100 FvH4_1g16100
malus_domestica	MD02G1172600.v1.1 MD15G1284600.v1.1
prunus_persica	Prupe.7G132900_v2.0.a1
pyrus_communis	pycom02g13910 pycom15g24730
rosa_chinensis	RchiOBHm_Chr2g0105721
rosa_laevigata	RLG00000017453
rosa_multiflora	Rmu_sc0000594.1_g000060 Rmu_sc0001051.1_g000061 Rmu_sc0039055.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002090 Rroxscaffold_1G00038100 Rroxscaffold_2G00137950 Rroxscaffold_5G00348070
rosa_rugosa	Rorug01G0167000 Rorug02G0129800 Rorug02G0283100
rosa_samantha	Rh2AG181200 Rh2BG190300 Rh2CG185400 Rh5BG197900 Rh5BG450300 Rh5CG472700 Rh5DG291600 Rh5DG464000 Rh6AG247300
rosa_wichuraiana	Rw2G014170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	410
AarI	CACCTGC	1 cut(s)	265
Acc36I	ACCTGC	1 cut(s)	265
AciI	CCGC	2 cut(s)	468, 727
AclWI	GGATC	4 cut(s)	117, 286, 299, 381
AcoI	YGGCCR	1 cut(s)	874
AcsI	RAATTY	2 cut(s)	74, 931
AcuI	CTGAAG	1 cut(s)	183
AdeI	CACNNNGTG	1 cut(s)	395
AfaI	GTAC	2 cut(s)	630, 1085
AfiI	CCNNNNNNNGG	3 cut(s)	632, 962, 993
AflIII	ACRYGT	1 cut(s)	844
AgsI	TTSAA	1 cut(s)	419
AjnI	CCWGG	3 cut(s)	272, 631, 876
AluBI	AGCT	4 cut(s)	13, 230, 494, 641
AluI	AGCT	4 cut(s)	13, 230, 494, 641
Alw21I	GWGCWC	2 cut(s)	195, 256
Alw26I	GTCTC	2 cut(s)	132, 864
AlwI	GGATC	4 cut(s)	117, 286, 299, 381
Ama87I	CYCGRG	3 cut(s)	599, 663, 908
AoxI	GGCC	2 cut(s)	874, 1088
ApeKI	GCWGC	3 cut(s)	179, 578, 593
ApoI	RAATTY	2 cut(s)	74, 931
AspLEI	GCGC	2 cut(s)	538, 984
AspS9I	GGNCC	4 cut(s)	4, 635, 778, 974
AsuHPI	GGTGA	1 cut(s)	356
AvaI	CYCGRG	3 cut(s)	599, 663, 908
AvaII	GGWCC	4 cut(s)	4, 635, 778, 974
AxyI	CCTNAGG	1 cut(s)	702
BaeI	ACNNNNGTAYC	2 cut(s)	138, 171
BalI	TGGCCA	1 cut(s)	876
BamHI	GGATCC	1 cut(s)	291
BanII	GRGCYC	2 cut(s)	607, 957
BauI	CACGAG	2 cut(s)	14, 129
Bbv12I	GWGCWC	2 cut(s)	195, 256
BbvI	GCAGC	3 cut(s)	191, 590, 605
BccI	CCATC	4 cut(s)	439, 630, 824, 1072
BcgI	CGANNNNNNTGC	2 cut(s)	1030, 1064
BciT130I	CCWGG	3 cut(s)	274, 633, 878
BcoDI	GTCTC	2 cut(s)	132, 864
BfaI	CTAG	3 cut(s)	585, 671, 1096
BfuAI	ACCTGC	1 cut(s)	265
BglI	GCCNNNNNGGC	1 cut(s)	602
BglII	AGATCT	1 cut(s)	681
BisI	GCNGC	3 cut(s)	180, 579, 594
BlsI	GCNGC	3 cut(s)	181, 580, 595
Bme1390I	CCNGG	3 cut(s)	274, 633, 878
Bme18I	GGWCC	4 cut(s)	4, 635, 778, 974
BmeT110I	CYCGRG	3 cut(s)	599, 663, 908
BmgT120I	GGNCC	4 cut(s)	4, 635, 778, 974
BmiI	GGNNCC	5 cut(s)	293, 472, 606, 779, 780
BmrFI	CCNGG	3 cut(s)	274, 633, 878
BmrI	ACTGGG	1 cut(s)	801
BmsI	GCATC	3 cut(s)	157, 191, 904
BmuI	ACTGGG	1 cut(s)	801
Bsa29I	ATCGAT	1 cut(s)	42
BsaI	GGTCTC	2 cut(s)	132, 864
BsaJI	CCNNGG	6 cut(s)	32, 432, 501, 598, 773, 909
BsaXI	ACNNNNNCTCC	2 cut(s)	733, 763
Bsc4I	CCNNNNNNNGG	3 cut(s)	632, 962, 993
Bse118I	RCCGGY	1 cut(s)	962
Bse1I	ACTGG	5 cut(s)	124, 521, 730, 796, 1082
Bse21I	CCTNAGG	1 cut(s)	702
BseBI	CCWGG	3 cut(s)	274, 633, 878
BseCI	ATCGAT	1 cut(s)	42
BseDI	CCNNGG	6 cut(s)	32, 432, 501, 598, 773, 909
BseGI	GGATG	3 cut(s)	622, 919, 1002
BseLI	CCNNNNNNNGG	3 cut(s)	632, 962, 993
BseMII	CTCAG	2 cut(s)	588, 716
BseNI	ACTGG	5 cut(s)	124, 521, 730, 796, 1082
BseRI	GAGGAG	1 cut(s)	257
BseXI	GCAGC	3 cut(s)	191, 590, 605
BshFI	GGCC	2 cut(s)	876, 1090
BshVI	ATCGAT	1 cut(s)	42
BsiHKAI	GWGCWC	2 cut(s)	195, 256
BsiHKCI	CYCGRG	3 cut(s)	599, 663, 908
BsiSI	CCGG	1 cut(s)	963
BslFI	GGGAC	1 cut(s)	791
BslI	CCNNNNNNNGG	3 cut(s)	632, 962, 993
BsmAI	GTCTC	2 cut(s)	132, 864
BsmFI	GGGAC	1 cut(s)	791
BsmI	GAATGC	3 cut(s)	27, 181, 216
BsnI	GGCC	2 cut(s)	876, 1090
Bso31I	GGTCTC	2 cut(s)	132, 864
BsoBI	CYCGRG	3 cut(s)	599, 663, 908
Bsp1286I	GDGCHC	4 cut(s)	195, 256, 607, 957
Bsp143I	GATC	6 cut(s)	109, 291, 373, 487, 681, 721
BspACI	CCGC	2 cut(s)	468, 727
BspANI	GGCC	2 cut(s)	876, 1090
BspCNI	CTCAG	2 cut(s)	587, 715
BspDI	ATCGAT	1 cut(s)	42
BspHI	TCATGA	3 cut(s)	102, 457, 862
BspLI	GGNNCC	5 cut(s)	293, 472, 606, 779, 780
BspMI	ACCTGC	1 cut(s)	265
BspPI	GGATC	4 cut(s)	117, 286, 299, 381
BspTNI	GGTCTC	2 cut(s)	132, 864
BsrFI	RCCGGY	1 cut(s)	962
BsrI	ACTGG	5 cut(s)	124, 521, 730, 796, 1082
BssAI	RCCGGY	1 cut(s)	962
BssECI	CCNNGG	6 cut(s)	32, 432, 501, 598, 773, 909
BssMI	GATC	6 cut(s)	109, 291, 373, 487, 681, 721
BssSI	CACGAG	2 cut(s)	14, 129
BssT1I	CCWWGG	2 cut(s)	501, 773
Bst2BI	CACGAG	2 cut(s)	14, 129
Bst2UI	CCWGG	3 cut(s)	274, 633, 878
Bst4CI	ACNGT	1 cut(s)	8
BstAPI	GCANNNNNTGC	1 cut(s)	563
BstC8I	GCNNGC	2 cut(s)	695, 964
BstDEI	CTNAG	2 cut(s)	574, 702
BstDSI	CCRYGG	2 cut(s)	32, 432
BstENI	CCTNNNNNAGG	2 cut(s)	630, 991
BstF5I	GGATG	3 cut(s)	622, 919, 1002
BstHHI	GCGC	2 cut(s)	538, 984
BstKTI	GATC	6 cut(s)	112, 294, 376, 490, 684, 724
BstMAI	GTCTC	2 cut(s)	132, 864
BstMBI	GATC	6 cut(s)	109, 291, 373, 487, 681, 721
BstMWI	GCNNNNNNNGC	5 cut(s)	167, 176, 563, 602, 990
BstNI	CCWGG	3 cut(s)	274, 633, 878
BstNSI	RCATGY	1 cut(s)	367
BstSCI	CCNGG	3 cut(s)	272, 631, 876
BstV1I	GCAGC	3 cut(s)	191, 590, 605
BstX2I	RGATCY	2 cut(s)	291, 681
BstXI	CCANNNNNNTGG	1 cut(s)	737
BstYI	RGATCY	2 cut(s)	291, 681
Bsu15I	ATCGAT	1 cut(s)	42
Bsu36I	CCTNAGG	1 cut(s)	702
BsuRI	GGCC	2 cut(s)	876, 1090
BsuTUI	ATCGAT	1 cut(s)	42
BtgI	CCRYGG	2 cut(s)	32, 432
BtsCI	GGATG	3 cut(s)	622, 919, 1002
BtsI	GCAGTG	1 cut(s)	1048
BtsIMutI	CAGTG	1 cut(s)	1048
BveI	ACCTGC	1 cut(s)	265
Cac8I	GCNNGC	2 cut(s)	695, 964
CciI	TCATGA	3 cut(s)	102, 457, 862
CfoI	GCGC	2 cut(s)	538, 984
Cfr10I	RCCGGY	1 cut(s)	962
Cfr13I	GGNCC	4 cut(s)	4, 635, 778, 974
ClaI	ATCGAT	1 cut(s)	42
Csp6I	GTAC	2 cut(s)	629, 1084
CviAII	CATG	4 cut(s)	103, 364, 458, 863
CviQI	GTAC	2 cut(s)	629, 1084
DdeI	CTNAG	2 cut(s)	574, 702
DpnI	GATC	6 cut(s)	111, 293, 375, 489, 683, 723
DpnII	GATC	6 cut(s)	109, 291, 373, 487, 681, 721
DraIII	CACNNNGTG	1 cut(s)	395
EaeI	YGGCCR	1 cut(s)	874
EciI	GGCGGA	1 cut(s)	716
Eco130I	CCWWGG	2 cut(s)	501, 773
Eco24I	GRGCYC	2 cut(s)	607, 957
Eco31I	GGTCTC	2 cut(s)	132, 864
Eco32I	GATATC	1 cut(s)	40
Eco47I	GGWCC	4 cut(s)	4, 635, 778, 974
Eco57I	CTGAAG	1 cut(s)	183
Eco81I	CCTNAGG	1 cut(s)	702
Eco88I	CYCGRG	3 cut(s)	599, 663, 908
EcoNI	CCTNNNNNAGG	2 cut(s)	630, 991
EcoO109I	RGGNCCY	1 cut(s)	778
EcoRII	CCWGG	3 cut(s)	272, 631, 876
EcoRV	GATATC	1 cut(s)	40
EcoT14I	CCWWGG	2 cut(s)	501, 773
EcoT38I	GRGCYC	2 cut(s)	607, 957
ErhI	CCWWGG	2 cut(s)	501, 773
FaeI	CATG	4 cut(s)	106, 367, 461, 866
FaqI	GGGAC	1 cut(s)	791
FatI	CATG	4 cut(s)	102, 363, 457, 862
Fnu4HI	GCNGC	3 cut(s)	180, 579, 594
FokI	GGATG	3 cut(s)	609, 926, 1009
FriOI	GRGCYC	2 cut(s)	607, 957
Fsp4HI	GCNGC	3 cut(s)	180, 579, 594
FspBI	CTAG	3 cut(s)	585, 671, 1096
GlaI	GCGC	2 cut(s)	537, 983
GluI	GCNGC	3 cut(s)	180, 579, 594
HaeIII	GGCC	2 cut(s)	876, 1090
HapII	CCGG	1 cut(s)	963
HhaI	GCGC	2 cut(s)	538, 984
Hin1II	CATG	4 cut(s)	106, 367, 461, 866
Hin6I	GCGC	2 cut(s)	536, 982
HinP1I	GCGC	2 cut(s)	536, 982
HincII	GTYRAC	1 cut(s)	117
HindII	GTYRAC	1 cut(s)	117
HinfI	GANTC	2 cut(s)	428, 656
HpaII	CCGG	1 cut(s)	963
HphI	GGTGA	1 cut(s)	356
Hpy166II	GTNNAC	1 cut(s)	117
Hpy188I	TCNGA	2 cut(s)	518, 718
Hpy188III	TCNNGA	9 cut(s)	103, 458, 663, 704, 852, 863, 908, 1010, 1068
Hpy8I	GTNNAC	1 cut(s)	117
HpyAV	CCTTC	4 cut(s)	44, 100, 364, 849
HpyCH4III	ACNGT	1 cut(s)	8
HpyCH4IV	ACGT	1 cut(s)	844
HpyCH4V	TGCA	9 cut(s)	146, 179, 260, 287, 425, 557, 593, 887, 1058
HpyF10VI	GCNNNNNNNGC	5 cut(s)	167, 176, 563, 602, 990
HpyF3I	CTNAG	2 cut(s)	574, 702
HpySE526I	ACGT	1 cut(s)	844
Hsp92II	CATG	4 cut(s)	106, 367, 461, 866
HspAI	GCGC	2 cut(s)	536, 982
KflI	GGGWCCC	1 cut(s)	778
KroI	GCCGGC	1 cut(s)	962
KroNI	GCCGGC	1 cut(s)	964
Kzo9I	GATC	6 cut(s)	109, 291, 373, 487, 681, 721
LmnI	GCTCC	2 cut(s)	610, 989
Lsp1109I	GCAGC	3 cut(s)	191, 590, 605
LweI	GCATC	3 cut(s)	157, 191, 904
MaeI	CTAG	3 cut(s)	585, 671, 1096
MaeII	ACGT	1 cut(s)	844
MaeIII	GTNAC	3 cut(s)	268, 304, 814
MalI	GATC	6 cut(s)	111, 293, 375, 489, 683, 723
MboI	GATC	6 cut(s)	109, 291, 373, 487, 681, 721
MboII	GAAGA	7 cut(s)	176, 184, 518, 521, 540, 651, 839
MflI	RGATCY	2 cut(s)	291, 681
MhlI	GDGCHC	4 cut(s)	195, 256, 607, 957
MlsI	TGGCCA	1 cut(s)	876
MluCI	AATT	6 cut(s)	74, 83, 399, 461, 931, 1035
MluNI	TGGCCA	1 cut(s)	876
MmeI	TCCRAC	1 cut(s)	505
Mox20I	TGGCCA	1 cut(s)	876
MroNI	GCCGGC	1 cut(s)	962
MscI	TGGCCA	1 cut(s)	876
MseI	TTAA	1 cut(s)	222
Msp20I	TGGCCA	1 cut(s)	876
MspI	CCGG	1 cut(s)	963
MspR9I	CCNGG	3 cut(s)	274, 633, 878
Mva1269I	GAATGC	3 cut(s)	27, 181, 216
MvaI	CCWGG	3 cut(s)	274, 633, 878
MwoI	GCNNNNNNNGC	5 cut(s)	167, 176, 563, 602, 990
NaeI	GCCGGC	1 cut(s)	964
NdeII	GATC	6 cut(s)	109, 291, 373, 487, 681, 721
NgoMIV	GCCGGC	1 cut(s)	962
NlaIII	CATG	4 cut(s)	106, 367, 461, 866
NlaIV	GGNNCC	5 cut(s)	293, 472, 606, 779, 780
NmuCI	GTSAC	1 cut(s)	304
NspI	RCATGY	1 cut(s)	367
PaeR7I	CTCGAG	1 cut(s)	663
PagI	TCATGA	3 cut(s)	102, 457, 862
PaqCI	CACCTGC	1 cut(s)	265
PcsI	WCGNNNNNNNCGW	1 cut(s)	850
PctI	GAATGC	3 cut(s)	27, 181, 216
PdiI	GCCGGC	1 cut(s)	964
PfeI	GAWTC	2 cut(s)	428, 656
PkrI	GCNGC	3 cut(s)	181, 580, 595
PpuMI	RGGWCCY	1 cut(s)	778
PsiI	TTATAA	1 cut(s)	410
Psp5II	RGGWCCY	1 cut(s)	778
Psp6I	CCWGG	3 cut(s)	272, 631, 876
PspGI	CCWGG	3 cut(s)	272, 631, 876
PspN4I	GGNNCC	5 cut(s)	293, 472, 606, 779, 780
PspPI	GGNCC	4 cut(s)	4, 635, 778, 974
PspPPI	RGGWCCY	1 cut(s)	778
PsuI	RGATCY	2 cut(s)	291, 681
RsaI	GTAC	2 cut(s)	630, 1085
RsaNI	GTAC	2 cut(s)	629, 1084
SaqAI	TTAA	1 cut(s)	222
SatI	GCNGC	3 cut(s)	180, 579, 594
Sau3AI	GATC	6 cut(s)	109, 291, 373, 487, 681, 721
Sau96I	GGNCC	4 cut(s)	4, 635, 778, 974
ScrFI	CCNGG	3 cut(s)	274, 633, 878
SduI	GDGCHC	4 cut(s)	195, 256, 607, 957
SfaNI	GCATC	3 cut(s)	157, 191, 904
Sfr274I	CTCGAG	1 cut(s)	663
SinI	GGWCC	4 cut(s)	4, 635, 778, 974
SlaI	CTCGAG	1 cut(s)	663
SmlI	CTYRAG	1 cut(s)	663
SmoI	CTYRAG	1 cut(s)	663
Sse9I	AATT	6 cut(s)	74, 83, 399, 461, 931, 1035
SsiI	CCGC	2 cut(s)	468, 727
SspMI	CTAG	3 cut(s)	585, 671, 1096
StyD4I	CCNGG	3 cut(s)	272, 631, 876
StyI	CCWWGG	2 cut(s)	501, 773
TaaI	ACNGT	1 cut(s)	8
TaiI	ACGT	1 cut(s)	847
TaqI	TCGA	4 cut(s)	42, 208, 490, 664
TaqII	GACCGA	2 cut(s)	102, 114
TasI	AATT	6 cut(s)	74, 83, 399, 461, 931, 1035
TfiI	GAWTC	2 cut(s)	428, 656
Tru1I	TTAA	1 cut(s)	222
Tru9I	TTAA	1 cut(s)	222
TscAI	CASTG	1 cut(s)	1048
TseFI	GTSAC	1 cut(s)	304
TseI	GCWGC	3 cut(s)	179, 578, 593
Tsp45I	GTSAC	1 cut(s)	304
TspDTI	ATGAA	3 cut(s)	119, 474, 956
TspGWI	ACGGA	4 cut(s)	21, 62, 368, 421
TspRI	CASTG	1 cut(s)	1048
VpaK11BI	GGWCC	4 cut(s)	4, 635, 778, 974
XagI	CCTNNNNNAGG	2 cut(s)	630, 991
XapI	RAATTY	2 cut(s)	74, 931
XceI	RCATGY	1 cut(s)	367
XhoI	CTCGAG	1 cut(s)	663
XspI	CTAG	3 cut(s)	585, 671, 1096

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.