Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003388

Physical Location & Seq

Genomic Coordinates Forward (+)

11205652 .. 11206725

Gene Structure 1074 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0129800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGCAGATTGTTAATGAGCCCAGAGTACTAGGGTTTGGAGTGCTTTTGGTTGTTGTCATTGCACTGTTGAGCCCATCATTGGTTGCTGGGCTCAAAGATGAGCATGACATTGCTGGGTTTAGTGCTAATGATAATGTCCACAATCTGACTTCCTCTGATGACCATGCTTTAGTCAAGAGTAACTACAATGGAGGTGGAAGTAGTGGAGGCGGTGGTGGTGGCGGAGGTGGAGGAGGTGGTGGGGGAGCGAGTGGAGGTGGTGGAAGTGGCCAGGGAGCAGGGGGAGGGAGTGGTGGAGCGAGTGGAGGTGGAAAAGGTAAGAGTAAAGGTAAAGGCCATAAGAAAAAAGGAAAGGAAAATGGCAAGGGTAAAAGAAATGGCGGTGCAGGGGCTGGTGGAGGTGGAGGAGGAGGAGGTGGTGGTGGTGGTGGTGGAGGGGGTGGAGGAAATGGCAATGGCCATGGAAGTGGTGGAGGAAGCGGTGGCGGGGGTGGTGGGGGAGGAGGTGGTAAAGGTGGTGGCGGCGGCGGCGGCGGAGGAGGAGGAGGTGGTGGCGGAGGAGGTGGTGGGGGAGGAGGAGGTGGTCAAGGTGGAGGTTGGGGTTGGGGAGGAGGAAATGGGGGTGGTAAAGGTTGTTGGGCTTGGGGCTGTGGTGGCCATCCGAAATCAATTGGAGGTCGGAAAGTTAATCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005849 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

RRM_1

Protein Analysis

231

Amino Acids

19.48

Weight (kDa)

9.97

Isoelectric Point (pI)

48.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003388)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36960 AT4G36960
fragaria_vesca	FvH4_1g16100 FvH4_1g16100 FvH4_1g16100 FvH4_1g16100 FvH4_1g16100 FvH4_1g16100 FvH4_1g16100
malus_domestica	MD02G1172600.v1.1 MD15G1284600.v1.1
prunus_persica	Prupe.7G132900_v2.0.a1
pyrus_communis	pycom02g13910 pycom15g24730
rosa_chinensis	RchiOBHm_Chr2g0105721
rosa_laevigata	RLG00000017453
rosa_multiflora	Rmu_sc0000594.1_g000060 Rmu_sc0001051.1_g000061 Rmu_sc0039055.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002090 Rroxscaffold_1G00038100 Rroxscaffold_2G00137950 Rroxscaffold_5G00348070
rosa_rugosa	Rorug01G0167000 Rorug02G0129800 Rorug02G0283100
rosa_samantha	Rh2AG181200 Rh2BG190300 Rh2CG185400 Rh5BG197900 Rh5BG450300 Rh5CG472700 Rh5DG291600 Rh5DG464000 Rh6AG247300
rosa_wichuraiana	Rw2G014170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	3 cut(s)	268, 457, 655
AfaI	GTAC	1 cut(s)	27
AfiI	CCNNNNNNNGG	1 cut(s)	79
AjnI	CCWGG	1 cut(s)	270
AlwNI	CAGNNNCTG	1 cut(s)	392
AoxI	GGCC	4 cut(s)	268, 334, 457, 655
BalI	TGGCCA	3 cut(s)	270, 459, 657
BanII	GRGCYC	3 cut(s)	21, 74, 93
BccI	CCATC	2 cut(s)	82, 666
BciT130I	CCWGG	1 cut(s)	272
BfaI	CTAG	1 cut(s)	29
BisI	GCNGC	4 cut(s)	523, 526, 529, 532
BlsI	GCNGC	4 cut(s)	524, 527, 530, 533
BmcAI	AGTACT	1 cut(s)	27
Bme1390I	CCNGG	1 cut(s)	272
BmrFI	CCNGG	1 cut(s)	272
BsaJI	CCNNGG	2 cut(s)	271, 460
Bsc4I	CCNNNNNNNGG	1 cut(s)	79
Bse3DI	GCAATG	3 cut(s)	57, 108, 460
BseBI	CCWGG	1 cut(s)	272
BseDI	CCNNGG	2 cut(s)	271, 460
BseGI	GGATG	1 cut(s)	658
BseLI	CCNNNNNNNGG	1 cut(s)	79
BseMI	GCAATG	3 cut(s)	57, 108, 460
BseYI	CCCAGC	2 cut(s)	86, 113
BsgI	GTGCAG	1 cut(s)	405
BshFI	GGCC	4 cut(s)	270, 336, 459, 657
BslI	CCNNNNNNNGG	1 cut(s)	79
BsnI	GGCC	4 cut(s)	270, 336, 459, 657
Bsp1286I	GDGCHC	3 cut(s)	21, 74, 93
Bsp19I	CCATGG	1 cut(s)	460
BspANI	GGCC	4 cut(s)	270, 336, 459, 657
BsrDI	GCAATG	3 cut(s)	57, 108, 460
BssECI	CCNNGG	2 cut(s)	271, 460
BssT1I	CCWWGG	1 cut(s)	460
Bst2UI	CCWGG	1 cut(s)	272
Bst4CI	ACNGT	1 cut(s)	66
BstDSI	CCRYGG	1 cut(s)	460
BstF5I	GGATG	1 cut(s)	658
BstMWI	GCNNNNNNNGC	3 cut(s)	528, 531, 654
BstNI	CCWGG	1 cut(s)	272
BstSCI	CCNGG	1 cut(s)	270
BstXI	CCANNNNNNTGG	1 cut(s)	467
BsuRI	GGCC	4 cut(s)	270, 336, 459, 657
BtgI	CCRYGG	1 cut(s)	460
BtsCI	GGATG	1 cut(s)	658
BtsIMutI	CAGTG	1 cut(s)	62
CaiI	CAGNNNCTG	1 cut(s)	392
Csp6I	GTAC	1 cut(s)	26
CspCI	CAANNNNNGTGG	2 cut(s)	175, 210
CviAII	CATG	3 cut(s)	104, 164, 461
CviQI	GTAC	1 cut(s)	26
EaeI	YGGCCR	3 cut(s)	268, 457, 655
EciI	GGCGGA	3 cut(s)	237, 549, 570
Eco130I	CCWWGG	1 cut(s)	460
Eco24I	GRGCYC	3 cut(s)	21, 74, 93
EcoRII	CCWGG	1 cut(s)	270
EcoT14I	CCWWGG	1 cut(s)	460
EcoT38I	GRGCYC	3 cut(s)	21, 74, 93
ErhI	CCWWGG	1 cut(s)	460
FaeI	CATG	3 cut(s)	107, 167, 464
FaiI	YATR	4 cut(s)	105, 165, 339, 462
FatI	CATG	3 cut(s)	103, 163, 460
FauI	CCCGC	1 cut(s)	479
Fnu4HI	GCNGC	4 cut(s)	523, 526, 529, 532
FokI	GGATG	1 cut(s)	645
FriOI	GRGCYC	3 cut(s)	21, 74, 93
Fsp4HI	GCNGC	4 cut(s)	523, 526, 529, 532
FspBI	CTAG	1 cut(s)	29
GluI	GCNGC	4 cut(s)	523, 526, 529, 532
GsaI	CCCAGC	2 cut(s)	90, 117
HaeIII	GGCC	4 cut(s)	270, 336, 459, 657
Hin1II	CATG	3 cut(s)	107, 167, 464
Hpy166II	GTNNAC	1 cut(s)	139
Hpy188I	TCNGA	4 cut(s)	147, 157, 663, 681
Hpy188III	TCNNGA	1 cut(s)	175
Hpy8I	GTNNAC	1 cut(s)	139
HpyCH4III	ACNGT	1 cut(s)	66
HpyCH4V	TGCA	3 cut(s)	4, 62, 386
HpyF10VI	GCNNNNNNNGC	3 cut(s)	528, 531, 654
Hsp92II	CATG	3 cut(s)	107, 167, 464
LmnI	GCTCC	3 cut(s)	245, 275, 296
LpnPI	CCDG	8 cut(s)	34, 72, 99, 257, 264, 284, 372, 378
MaeI	CTAG	1 cut(s)	29
MaeIII	GTNAC	1 cut(s)	179
MfeI	CAATTG	1 cut(s)	669
MhlI	GDGCHC	3 cut(s)	21, 74, 93
MlsI	TGGCCA	3 cut(s)	270, 459, 657
MluCI	AATT	1 cut(s)	669
MluNI	TGGCCA	3 cut(s)	270, 459, 657
MmeI	TCCRAC	1 cut(s)	659
Mox20I	TGGCCA	3 cut(s)	270, 459, 657
MscI	TGGCCA	3 cut(s)	270, 459, 657
MseI	TTAA	2 cut(s)	12, 687
MslI	CAYNNNNRTG	1 cut(s)	465
Msp20I	TGGCCA	3 cut(s)	270, 459, 657
MspR9I	CCNGG	1 cut(s)	272
MunI	CAATTG	1 cut(s)	669
MvaI	CCWGG	1 cut(s)	272
MwoI	GCNNNNNNNGC	3 cut(s)	528, 531, 654
NcoI	CCATGG	1 cut(s)	460
NlaIII	CATG	3 cut(s)	107, 167, 464
PkrI	GCNGC	4 cut(s)	524, 527, 530, 533
Psp6I	CCWGG	1 cut(s)	270
PspFI	CCCAGC	2 cut(s)	86, 113
PspGI	CCWGG	1 cut(s)	270
PstNI	CAGNNNCTG	1 cut(s)	392
RsaI	GTAC	1 cut(s)	27
RsaNI	GTAC	1 cut(s)	26
RseI	CAYNNNNRTG	1 cut(s)	465
SaqAI	TTAA	2 cut(s)	12, 687
SatI	GCNGC	4 cut(s)	523, 526, 529, 532
ScaI	AGTACT	1 cut(s)	27
ScrFI	CCNGG	1 cut(s)	272
SduI	GDGCHC	3 cut(s)	21, 74, 93
SmiMI	CAYNNNNRTG	1 cut(s)	465
Sse9I	AATT	1 cut(s)	669
SspMI	CTAG	1 cut(s)	29
StyD4I	CCNGG	1 cut(s)	270
StyI	CCWWGG	1 cut(s)	460
TaaI	ACNGT	1 cut(s)	66
TasI	AATT	1 cut(s)	669
TatI	WGTACW	1 cut(s)	25
TauI	GCSGC	4 cut(s)	525, 528, 531, 534
Tru1I	TTAA	2 cut(s)	12, 687
Tru9I	TTAA	2 cut(s)	12, 687
TscAI	CASTG	1 cut(s)	69
TspRI	CASTG	1 cut(s)	69
XcmI	CCANNNNNNNNNTGG	1 cut(s)	467
XspI	CTAG	1 cut(s)	29
ZrmI	AGTACT	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.