Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039055.1

Orthogroup ID

OG0003388

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1424

Gene Structure 1424 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039055.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 260 bp

atggaccgcaggcttgtggttttgggcattccatgggatattgatacagacgggttgagagagtatatgagcaaatatggggaattggaggattgtattgtaatgaaggagcggtcaactggccgatcttgtggatttggatatgtaacgtttgcatcagctgaggatgccaaggaagagatgagagcacctgcaagaaaagttaccaggatatttgttgcaaggatcccacaatttgtgacagaagcaaactttcgagg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005849 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

RRM_1

Protein Analysis

87

Amino Acids

9.96

Weight (kDa)

6.26

Isoelectric Point (pI)

43.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003388)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36960 AT4G36960
fragaria_vesca	FvH4_1g16100 FvH4_1g16100 FvH4_1g16100 FvH4_1g16100 FvH4_1g16100 FvH4_1g16100 FvH4_1g16100
malus_domestica	MD02G1172600.v1.1 MD15G1284600.v1.1
prunus_persica	Prupe.7G132900_v2.0.a1
pyrus_communis	pycom02g13910 pycom15g24730
rosa_chinensis	RchiOBHm_Chr2g0105721
rosa_laevigata	RLG00000017453
rosa_multiflora	Rmu_sc0000594.1_g000060 Rmu_sc0001051.1_g000061 Rmu_sc0039055.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002090 Rroxscaffold_1G00038100 Rroxscaffold_2G00137950 Rroxscaffold_5G00348070
rosa_rugosa	Rorug01G0167000 Rorug02G0129800 Rorug02G0283100
rosa_samantha	Rh2AG181200 Rh2BG190300 Rh2CG185400 Rh5BG197900 Rh5BG450300 Rh5CG472700 Rh5DG291600 Rh5DG464000 Rh6AG247300
rosa_wichuraiana	Rw2G014170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	199
Acc36I	ACCTGC	1 cut(s)	199
AccBSI	CCGCTC	1 cut(s)	112
AciI	CCGC	2 cut(s)	7, 112
AclI	AACGTT	1 cut(s)	149
AclWI	GGATC	2 cut(s)	220, 233
AcoI	YGGCCR	1 cut(s)	121
AjnI	CCWGG	1 cut(s)	206
AluBI	AGCT	1 cut(s)	161
AluI	AGCT	1 cut(s)	161
Alw21I	GWGCWC	1 cut(s)	190
AlwI	GGATC	2 cut(s)	220, 233
AoxI	GGCC	1 cut(s)	121
AspS9I	GGNCC	1 cut(s)	4
AvaII	GGWCC	1 cut(s)	4
BamHI	GGATCC	1 cut(s)	225
Bbv12I	GWGCWC	1 cut(s)	190
BbvCI	CCTCAGC	1 cut(s)	162
BciT130I	CCWGG	1 cut(s)	208
BfuAI	ACCTGC	1 cut(s)	199
Bme1390I	CCNGG	1 cut(s)	208
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	227
BmrFI	CCNGG	1 cut(s)	208
BmsI	GCATC	2 cut(s)	157, 164
Bpu10I	CCTNAGC	1 cut(s)	162
BsaJI	CCNNGG	2 cut(s)	32, 171
Bse1I	ACTGG	1 cut(s)	124
BseBI	CCWGG	1 cut(s)	208
BseDI	CCNNGG	2 cut(s)	32, 171
BseGI	GGATG	1 cut(s)	172
BseMII	CTCAG	1 cut(s)	153
BseNI	ACTGG	1 cut(s)	124
BshFI	GGCC	1 cut(s)	123
BsiHKAI	GWGCWC	1 cut(s)	190
BsmI	GAATGC	1 cut(s)	27
BsnI	GGCC	1 cut(s)	123
Bsp1286I	GDGCHC	1 cut(s)	190
Bsp143I	GATC	2 cut(s)	125, 225
Bsp19I	CCATGG	1 cut(s)	32
BspACI	CCGC	2 cut(s)	7, 112
BspANI	GGCC	1 cut(s)	123
BspCNI	CTCAG	1 cut(s)	154
BspLI	GGNNCC	1 cut(s)	227
BspMI	ACCTGC	1 cut(s)	199
BspPI	GGATC	2 cut(s)	220, 233
BsrBI	CCGCTC	1 cut(s)	112
BsrI	ACTGG	1 cut(s)	124
BssECI	CCNNGG	2 cut(s)	32, 171
BssMI	GATC	2 cut(s)	125, 225
BssT1I	CCWWGG	2 cut(s)	32, 171
Bst2UI	CCWGG	1 cut(s)	208
Bst6I	CTCTTC	1 cut(s)	171
BstC8I	GCNNGC	1 cut(s)	11
BstDEI	CTNAG	1 cut(s)	162
BstDSI	CCRYGG	1 cut(s)	32
BstF5I	GGATG	1 cut(s)	172
BstKTI	GATC	2 cut(s)	128, 228
BstMBI	GATC	2 cut(s)	125, 225
BstMWI	GCNNNNNNNGC	1 cut(s)	167
BstNI	CCWGG	1 cut(s)	208
BstSCI	CCNGG	1 cut(s)	206
BstX2I	RGATCY	1 cut(s)	225
BstYI	RGATCY	1 cut(s)	225
BsuRI	GGCC	1 cut(s)	123
BtgI	CCRYGG	1 cut(s)	32
BtsCI	GGATG	1 cut(s)	172
BveI	ACCTGC	1 cut(s)	199
Cac8I	GCNNGC	1 cut(s)	11
Cfr13I	GGNCC	1 cut(s)	4
CviAII	CATG	1 cut(s)	33
CviJI	RGCY	3 cut(s)	13, 123, 161
CviKI_1	RGCY	3 cut(s)	13, 123, 161
DdeI	CTNAG	1 cut(s)	162
DpnI	GATC	2 cut(s)	127, 227
DpnII	GATC	2 cut(s)	125, 225
EaeI	YGGCCR	1 cut(s)	121
Eam1104I	CTCTTC	1 cut(s)	171
EarI	CTCTTC	1 cut(s)	171
Eco130I	CCWWGG	2 cut(s)	32, 171
Eco47I	GGWCC	1 cut(s)	4
EcoRII	CCWGG	1 cut(s)	206
EcoT14I	CCWWGG	2 cut(s)	32, 171
ErhI	CCWWGG	2 cut(s)	32, 171
FaeI	CATG	1 cut(s)	36
FaiI	YATR	5 cut(s)	34, 66, 68, 78, 144
FatI	CATG	1 cut(s)	32
FokI	GGATG	1 cut(s)	179
HaeIII	GGCC	1 cut(s)	123
Hin1II	CATG	1 cut(s)	36
HincII	GTYRAC	1 cut(s)	117
HindII	GTYRAC	1 cut(s)	117
Hpy166II	GTNNAC	1 cut(s)	117
Hpy8I	GTNNAC	1 cut(s)	117
HpyAV	CCTTC	1 cut(s)	100
HpyCH4IV	ACGT	1 cut(s)	149
HpyCH4V	TGCA	3 cut(s)	155, 194, 221
HpyF10VI	GCNNNNNNNGC	1 cut(s)	167
HpyF3I	CTNAG	1 cut(s)	162
HpySE526I	ACGT	1 cut(s)	149
Hsp92II	CATG	1 cut(s)	36
Kzo9I	GATC	2 cut(s)	125, 225
LmnI	GCTCC	1 cut(s)	109
LpnPI	CCDG	4 cut(s)	105, 193, 204, 220
LweI	GCATC	2 cut(s)	157, 164
MaeII	ACGT	1 cut(s)	149
MaeIII	GTNAC	3 cut(s)	145, 202, 238
MalI	GATC	2 cut(s)	127, 227
MbiI	CCGCTC	1 cut(s)	112
MboI	GATC	2 cut(s)	125, 225
MboII	GAAGA	1 cut(s)	188
MflI	RGATCY	1 cut(s)	225
MhlI	GDGCHC	1 cut(s)	190
MluCI	AATT	2 cut(s)	83, 233
MnlI	CCTC	3 cut(s)	82, 157, 251
MspA1I	CMGCKG	1 cut(s)	161
MspR9I	CCNGG	1 cut(s)	208
Mva1269I	GAATGC	1 cut(s)	27
MvaI	CCWGG	1 cut(s)	208
MwoI	GCNNNNNNNGC	1 cut(s)	167
NcoI	CCATGG	1 cut(s)	32
NdeII	GATC	2 cut(s)	125, 225
NlaIII	CATG	1 cut(s)	36
NlaIV	GGNNCC	1 cut(s)	227
NmuCI	GTSAC	1 cut(s)	238
PaqCI	CACCTGC	1 cut(s)	199
PctI	GAATGC	1 cut(s)	27
Psp1406I	AACGTT	1 cut(s)	149
Psp6I	CCWGG	1 cut(s)	206
PspGI	CCWGG	1 cut(s)	206
PspN4I	GGNNCC	1 cut(s)	227
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	1 cut(s)	225
PvuII	CAGCTG	1 cut(s)	161
Sau3AI	GATC	2 cut(s)	125, 225
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	1 cut(s)	208
SduI	GDGCHC	1 cut(s)	190
SetI	ASST	3 cut(s)	152, 163, 193
SfaNI	GCATC	2 cut(s)	157, 164
SinI	GGWCC	1 cut(s)	4
Sse9I	AATT	2 cut(s)	83, 233
SsiI	CCGC	2 cut(s)	7, 112
StyD4I	CCNGG	1 cut(s)	206
StyI	CCWWGG	2 cut(s)	32, 171
TaiI	ACGT	1 cut(s)	152
TaqI	TCGA	1 cut(s)	256
TasI	AATT	2 cut(s)	83, 233
TseFI	GTSAC	1 cut(s)	238
Tsp45I	GTSAC	1 cut(s)	238
TspDTI	ATGAA	1 cut(s)	119
VpaK11BI	GGWCC	1 cut(s)	4

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.