Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003388

Physical Location & Seq

Genomic Coordinates Forward (+)

19970314 .. 19970851

Gene Structure 538 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00348070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGGGTTATAGATTTATAGGTTTTGGAATATGGATGAGGGGATTGGTTATTGATTGGTTTGATTTGACTTTTGTGATTGTGTTTCAGGTTTTGGGCATTCCATGGGATGTTGATACGGACGGGTTGAGAGAGTATATGAGCAAATATGTGGAATTGGAGGATTGTATTGTAATGAAGGAGCTGTCAACCGGTCGAACTCATGGATTTGGATATGTAAAGTTTGCATCAGCTGAAGATGCCAAGCTGAGTTGTCTTATAACTTCTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005849 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

RRM_1

Protein Analysis

89

Amino Acids

10.16

Weight (kDa)

4.72

Isoelectric Point (pI)

19.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	32 - 81	1e-09	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003388)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36960 AT4G36960
fragaria_vesca	FvH4_1g16100 FvH4_1g16100 FvH4_1g16100 FvH4_1g16100 FvH4_1g16100 FvH4_1g16100 FvH4_1g16100
malus_domestica	MD02G1172600.v1.1 MD15G1284600.v1.1
prunus_persica	Prupe.7G132900_v2.0.a1
pyrus_communis	pycom02g13910 pycom15g24730
rosa_chinensis	RchiOBHm_Chr2g0105721
rosa_laevigata	RLG00000017453
rosa_multiflora	Rmu_sc0000594.1_g000060 Rmu_sc0001051.1_g000061 Rmu_sc0039055.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002090 Rroxscaffold_1G00038100 Rroxscaffold_2G00137950 Rroxscaffold_5G00348070
rosa_rugosa	Rorug01G0167000 Rorug02G0129800 Rorug02G0283100
rosa_samantha	Rh2AG181200 Rh2BG190300 Rh2CG185400 Rh5BG197900 Rh5BG450300 Rh5CG472700 Rh5DG291600 Rh5DG464000 Rh6AG247300
rosa_wichuraiana	Rw2G014170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	257
AcuI	CTGAAG	1 cut(s)	252
AgeI	ACCGGT	1 cut(s)	188
AluBI	AGCT	3 cut(s)	181, 230, 244
AluI	AGCT	3 cut(s)	181, 230, 244
AsiGI	ACCGGT	1 cut(s)	188
BmsI	GCATC	2 cut(s)	226, 233
BsaJI	CCNNGG	1 cut(s)	101
BsaWI	WCCGGW	1 cut(s)	188
Bse118I	RCCGGY	1 cut(s)	188
BseDI	CCNNGG	1 cut(s)	101
BseGI	GGATG	2 cut(s)	39, 112
BseMII	CTCAG	1 cut(s)	236
Bsh1285I	CGRYCG	1 cut(s)	193
BshTI	ACCGGT	1 cut(s)	188
BsiEI	CGRYCG	1 cut(s)	193
BsiSI	CCGG	1 cut(s)	189
BsmI	GAATGC	1 cut(s)	96
Bsp19I	CCATGG	1 cut(s)	101
BspCNI	CTCAG	1 cut(s)	237
BsrFI	RCCGGY	1 cut(s)	188
BssAI	RCCGGY	1 cut(s)	188
BssECI	CCNNGG	1 cut(s)	101
BssT1I	CCWWGG	1 cut(s)	101
BstDEI	CTNAG	1 cut(s)	245
BstDSI	CCRYGG	1 cut(s)	101
BstF5I	GGATG	2 cut(s)	39, 112
BstMCI	CGRYCG	1 cut(s)	193
BstMWI	GCNNNNNNNGC	1 cut(s)	236
BtgI	CCRYGG	1 cut(s)	101
BtsCI	GGATG	2 cut(s)	39, 112
Cfr10I	RCCGGY	1 cut(s)	188
CspAI	ACCGGT	1 cut(s)	188
CviAII	CATG	2 cut(s)	102, 200
CviJI	RGCY	3 cut(s)	181, 230, 244
CviKI_1	RGCY	3 cut(s)	181, 230, 244
DdeI	CTNAG	1 cut(s)	245
Eco130I	CCWWGG	1 cut(s)	101
Eco57I	CTGAAG	1 cut(s)	252
EcoT14I	CCWWGG	1 cut(s)	101
ErhI	CCWWGG	1 cut(s)	101
FaeI	CATG	2 cut(s)	105, 203
FatI	CATG	2 cut(s)	101, 199
FokI	GGATG	2 cut(s)	46, 119
HapII	CCGG	1 cut(s)	189
Hin1II	CATG	2 cut(s)	105, 203
HincII	GTYRAC	1 cut(s)	186
HindII	GTYRAC	1 cut(s)	186
HpaII	CCGG	1 cut(s)	189
Hpy166II	GTNNAC	1 cut(s)	186
Hpy8I	GTNNAC	1 cut(s)	186
HpyAV	CCTTC	1 cut(s)	169
HpyCH4V	TGCA	1 cut(s)	224
HpyF10VI	GCNNNNNNNGC	1 cut(s)	236
HpyF3I	CTNAG	1 cut(s)	245
Hsp92II	CATG	2 cut(s)	105, 203
LmnI	GCTCC	1 cut(s)	178
LpnPI	CCDG	3 cut(s)	71, 202, 249
LweI	GCATC	2 cut(s)	226, 233
MboII	GAAGA	1 cut(s)	245
MluCI	AATT	1 cut(s)	152
MnlI	CCTC	2 cut(s)	30, 151
MspA1I	CMGCKG	1 cut(s)	230
MspI	CCGG	1 cut(s)	189
Mva1269I	GAATGC	1 cut(s)	96
MwoI	GCNNNNNNNGC	1 cut(s)	236
NcoI	CCATGG	1 cut(s)	101
NlaIII	CATG	2 cut(s)	105, 203
PctI	GAATGC	1 cut(s)	96
PinAI	ACCGGT	1 cut(s)	188
PsiI	TTATAA	1 cut(s)	257
PvuII	CAGCTG	1 cut(s)	230
SetI	ASST	5 cut(s)	22, 90, 183, 232, 246
SfaNI	GCATC	2 cut(s)	226, 233
SgeI	CNNG	6 cut(s)	98, 114, 133, 201, 212, 253
Sse9I	AATT	1 cut(s)	152
StyI	CCWWGG	1 cut(s)	101
TaqI	TCGA	1 cut(s)	193
TasI	AATT	1 cut(s)	152
TspDTI	ATGAA	1 cut(s)	188
TspGWI	ACGGA	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.