pycom15g24730

Heterogeneous nuclear ribonucleoprotein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Reverse (-)
19006681 .. 19010209
3529 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g24730.13

Sequence Viewer

Length: 1128 bp
ATGGACCGCAAGCTCGTGGTTTTGGGCATTCCGTGGGAAATCGATACGGAAGGGTTGAAAGAGTATATGGTTAAATTTGGGGAATTGGAGGATTGCATTGTCATGAAGGATCGGTCAACTGGTCGGTCTCGTGGATTTGGATATGCGACATTTGTATCTGCTGAAGATGCCAAAACTGCAGCGTCAAGTGAACATTTTCTTGGCAATAGAATGCTGGAAGTTAAAATAGCTACCCCAAAGGAGGAGATGAGAGCACCTGCAAGAAAAGTTACCAGGATATTTGTTGCAAGGATCCCACAATCTGTGACAGAAGCAAACTTCAGAAGTCATTTTGAAAAATATGGTGAAATAACGGATTTATACATGCCGAAGGATCAAAGTTCAAAAGTGCATCGGGGAATTGGGTTTATAACTTTTGAAAATGCAGATTCTGTGGAAGATTTGATGGCTGATACTCATGAATTAGGCGGTTCCAATGTAGTTGTTGATCGAGCTACACCCAAGGAAGATGATTTCAGACCAGTTGGAAGAATGGCGCAACAGGGTGGCTATGGGGCATATAATGCTTATATCTCAGCAGCTACTAGATATGCAGCCCTCGGGGCTCCTACCTTGTATGACCACCCTGTACCAGGACCAGCTTTTCCAAGAGGGGAGTCTGCTCGAGGACTGGGCAAAAAGATTTTTGTTGGCAGGCTTCCTCAGGAAGCAACCTCTGATGATCTCCGACAGTATTTTGGAAGATTTGGTCGTATAGTAGATGTCTATGTTCCAAGGGACCCCAAAAGAACTGGGCATAGAGGGTTTGGTTTTGTAACTTTCGGGGAAGATGGTGTAGCAGAACGTGTATCACGAAGGTCTCATGAGATTTGTGGCCAGCAGGTTGCAATAGATACAGCCACACCTCCAGAGGATGCTGGTACAAGTGGAAATTTTATGATGAATAATGTAGAGCCCTTTGCCGGCTACGGTGGTCCTATGCGCTCCTATGGCAGGATGTATGGAAGTCTGGATTTTGATGATATGCCGTCCTGCATTAGTAGGGAATCGGCAGTGCGAGACCAGCAAGAGCAGATTGGAGGTACAGGCCATACTAGAGAGATGTGGCTCTGGAAAATTGGTACTTGA

Protein Analysis

376

Amino Acids

41.65

Weight (kDa)

6.12

Isoelectric Point (pI)

39.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 410
AarI CACCTGC 1 cut(s) 265
Acc36I ACCTGC 2 cut(s) 265, 871
AciI CCGC 2 cut(s) 7, 468
AclWI GGATC 4 cut(s) 117, 286, 299, 381
AcoI YGGCCR 1 cut(s) 874
AcsI RAATTY 2 cut(s) 74, 931
AcuI CTGAAG 2 cut(s) 183, 304
AfaI GTAC 4 cut(s) 630, 922, 1084, 1123
AfiI CCNNNNNNNGG 4 cut(s) 241, 632, 962, 993
AflIII ACRYGT 1 cut(s) 844
AgsI TTSAA 4 cut(s) 58, 335, 384, 419
AjnI CCWGG 2 cut(s) 272, 631
AjuI GAANNNNNNNTTGG 2 cut(s) 183, 215
AluBI AGCT 5 cut(s) 13, 230, 494, 581, 641
AluI AGCT 5 cut(s) 13, 230, 494, 581, 641
Alw21I GWGCWC 1 cut(s) 256
Alw26I GTCTC 3 cut(s) 132, 864, 1053
AlwI GGATC 4 cut(s) 117, 286, 299, 381
AlwNI CAGNNNCTG 1 cut(s) 431
Ama87I CYCGRG 2 cut(s) 599, 663
AoxI GGCC 2 cut(s) 874, 1087
ApeKI GCWGC 3 cut(s) 179, 578, 593
ApoI RAATTY 2 cut(s) 74, 931
Asp700I GAANNNNTTC 1 cut(s) 195
AspLEI GCGC 2 cut(s) 538, 984
AspS9I GGNCC 4 cut(s) 4, 635, 778, 974
AsuHPI GGTGA 1 cut(s) 356
AvaI CYCGRG 2 cut(s) 599, 663
AvaII GGWCC 4 cut(s) 4, 635, 778, 974
AxyI CCTNAGG 1 cut(s) 702
BaeI ACNNNNGTAYC 2 cut(s) 138, 171
BalI TGGCCA 1 cut(s) 876
BamHI GGATCC 1 cut(s) 291
BanII GRGCYC 2 cut(s) 607, 957
BauI CACGAG 2 cut(s) 14, 129
Bbv12I GWGCWC 1 cut(s) 256
BbvI GCAGC 3 cut(s) 191, 590, 605
BccI CCATC 2 cut(s) 439, 824
BceAI ACGGC 1 cut(s) 1012
BciT130I CCWGG 2 cut(s) 274, 633
BcoDI GTCTC 3 cut(s) 132, 864, 1053
BfaI CTAG 2 cut(s) 585, 1095
BfmI CTRYAG 1 cut(s) 177
BfuAI ACCTGC 2 cut(s) 265, 871
BglI GCCNNNNNGGC 1 cut(s) 602
BisI GCNGC 3 cut(s) 180, 579, 594
BlsI GCNGC 3 cut(s) 181, 580, 595
Bme1390I CCNGG 2 cut(s) 274, 633
Bme18I GGWCC 4 cut(s) 4, 635, 778, 974
BmeT110I CYCGRG 2 cut(s) 599, 663
BmgT120I GGNCC 4 cut(s) 4, 635, 778, 974
BmiI GGNNCC 5 cut(s) 293, 472, 606, 779, 780
BmrFI CCNGG 2 cut(s) 274, 633
BmrI ACTGGG 2 cut(s) 680, 801
BmsI GCATC 3 cut(s) 157, 400, 904
BmuI ACTGGG 2 cut(s) 680, 801
BpmI CTGGAG 1 cut(s) 891
Bsa29I ATCGAT 1 cut(s) 42
BsaI GGTCTC 3 cut(s) 132, 864, 1053
BsaJI CCNNGG 4 cut(s) 32, 501, 598, 773
Bsc4I CCNNNNNNNGG 4 cut(s) 241, 632, 962, 993
Bse118I RCCGGY 1 cut(s) 962
Bse1I ACTGG 4 cut(s) 124, 521, 675, 796
Bse21I CCTNAGG 1 cut(s) 702
BseBI CCWGG 2 cut(s) 274, 633
BseCI ATCGAT 1 cut(s) 42
BseDI CCNNGG 4 cut(s) 32, 501, 598, 773
BseGI GGATG 2 cut(s) 919, 1002
BseLI CCNNNNNNNGG 4 cut(s) 241, 632, 962, 993
BseMII CTCAG 2 cut(s) 588, 716
BseNI ACTGG 4 cut(s) 124, 521, 675, 796
BseRI GAGGAG 1 cut(s) 257
BseXI GCAGC 3 cut(s) 191, 590, 605
BshFI GGCC 2 cut(s) 876, 1089
BshVI ATCGAT 1 cut(s) 42
BsiHKAI GWGCWC 1 cut(s) 256
BsiHKCI CYCGRG 2 cut(s) 599, 663
BsiSI CCGG 1 cut(s) 963
BslFI GGGAC 1 cut(s) 791
BslI CCNNNNNNNGG 4 cut(s) 241, 632, 962, 993
BsmAI GTCTC 3 cut(s) 132, 864, 1053
BsmFI GGGAC 1 cut(s) 791
BsmI GAATGC 2 cut(s) 27, 216
BsnI GGCC 2 cut(s) 876, 1089
Bso31I GGTCTC 3 cut(s) 132, 864, 1053
BsoBI CYCGRG 2 cut(s) 599, 663
Bsp1286I GDGCHC 3 cut(s) 256, 607, 957
Bsp143I GATC 5 cut(s) 109, 291, 373, 487, 721
BspACI CCGC 2 cut(s) 7, 468
BspANI GGCC 2 cut(s) 876, 1089
BspCNI CTCAG 2 cut(s) 587, 715
BspDI ATCGAT 1 cut(s) 42
BspHI TCATGA 3 cut(s) 102, 457, 862
BspLI GGNNCC 5 cut(s) 293, 472, 606, 779, 780
BspMAI CTGCAG 1 cut(s) 181
BspMI ACCTGC 2 cut(s) 265, 871
BspPI GGATC 4 cut(s) 117, 286, 299, 381
BspTNI GGTCTC 3 cut(s) 132, 864, 1053
BsrFI RCCGGY 1 cut(s) 962
BsrI ACTGG 4 cut(s) 124, 521, 675, 796
BssAI RCCGGY 1 cut(s) 962
BssECI CCNNGG 4 cut(s) 32, 501, 598, 773
BssMI GATC 5 cut(s) 109, 291, 373, 487, 721
BssSI CACGAG 2 cut(s) 14, 129
BssT1I CCWWGG 2 cut(s) 501, 773
Bst2BI CACGAG 2 cut(s) 14, 129
Bst2UI CCWGG 2 cut(s) 274, 633
Bst4CI ACNGT 2 cut(s) 732, 971
BstAPI GCANNNNNTGC 1 cut(s) 563
BstC8I GCNNGC 4 cut(s) 11, 695, 878, 964
BstDEI CTNAG 2 cut(s) 574, 702
BstDSI CCRYGG 1 cut(s) 32
BstENI CCTNNNNNAGG 2 cut(s) 630, 991
BstF5I GGATG 2 cut(s) 919, 1002
BstHHI GCGC 2 cut(s) 538, 984
BstKTI GATC 5 cut(s) 112, 294, 376, 490, 724
BstMAI GTCTC 3 cut(s) 132, 864, 1053
BstMBI GATC 5 cut(s) 109, 291, 373, 487, 721
BstMWI GCNNNNNNNGC 6 cut(s) 167, 176, 563, 602, 990, 1063
BstNI CCWGG 2 cut(s) 274, 633
BstNSI RCATGY 1 cut(s) 367
BstSCI CCNGG 2 cut(s) 272, 631
BstSFI CTRYAG 1 cut(s) 177
BstV1I GCAGC 3 cut(s) 191, 590, 605
BstX2I RGATCY 1 cut(s) 291
BstYI RGATCY 1 cut(s) 291
Bsu15I ATCGAT 1 cut(s) 42
Bsu36I CCTNAGG 1 cut(s) 702
BsuRI GGCC 2 cut(s) 876, 1089
BsuTUI ATCGAT 1 cut(s) 42
BtgI CCRYGG 1 cut(s) 32
BtsCI GGATG 2 cut(s) 919, 1002
BtsI GCAGTG 1 cut(s) 1059
BtsIMutI CAGTG 1 cut(s) 1059
BveI ACCTGC 2 cut(s) 265, 871
Cac8I GCNNGC 4 cut(s) 11, 695, 878, 964
CaiI CAGNNNCTG 1 cut(s) 431
CciI TCATGA 3 cut(s) 102, 457, 862
CfoI GCGC 2 cut(s) 538, 984
Cfr10I RCCGGY 1 cut(s) 962
Cfr13I GGNCC 4 cut(s) 4, 635, 778, 974
ClaI ATCGAT 1 cut(s) 42
CseI GACGC 1 cut(s) 171
Csp6I GTAC 4 cut(s) 629, 921, 1083, 1122
CviAII CATG 4 cut(s) 103, 364, 458, 863
CviQI GTAC 4 cut(s) 629, 921, 1083, 1122
DdeI CTNAG 2 cut(s) 574, 702
DpnI GATC 5 cut(s) 111, 293, 375, 489, 723
DpnII GATC 5 cut(s) 109, 291, 373, 487, 721
EaeI YGGCCR 1 cut(s) 874
Eco130I CCWWGG 2 cut(s) 501, 773
Eco24I GRGCYC 2 cut(s) 607, 957
Eco31I GGTCTC 3 cut(s) 132, 864, 1053
Eco47I GGWCC 4 cut(s) 4, 635, 778, 974
Eco57I CTGAAG 2 cut(s) 183, 304
Eco81I CCTNAGG 1 cut(s) 702
Eco88I CYCGRG 2 cut(s) 599, 663
EcoNI CCTNNNNNAGG 2 cut(s) 630, 991
EcoO109I RGGNCCY 1 cut(s) 778
EcoRII CCWGG 2 cut(s) 272, 631
EcoT14I CCWWGG 2 cut(s) 501, 773
EcoT38I GRGCYC 2 cut(s) 607, 957
ErhI CCWWGG 2 cut(s) 501, 773
FaeI CATG 4 cut(s) 106, 367, 461, 866
FaqI GGGAC 1 cut(s) 791
FatI CATG 4 cut(s) 102, 363, 457, 862
Fnu4HI GCNGC 3 cut(s) 180, 579, 594
FokI GGATG 2 cut(s) 926, 1009
FriOI GRGCYC 2 cut(s) 607, 957
Fsp4HI GCNGC 3 cut(s) 180, 579, 594
FspBI CTAG 2 cut(s) 585, 1095
GlaI GCGC 2 cut(s) 537, 983
GluI GCNGC 3 cut(s) 180, 579, 594
GsuI CTGGAG 1 cut(s) 891
HaeIII GGCC 2 cut(s) 876, 1089
HapII CCGG 1 cut(s) 963
HgaI GACGC 1 cut(s) 171
HhaI GCGC 2 cut(s) 538, 984
Hin1II CATG 4 cut(s) 106, 367, 461, 866
Hin6I GCGC 2 cut(s) 536, 982
HinP1I GCGC 2 cut(s) 536, 982
HincII GTYRAC 1 cut(s) 117
HindII GTYRAC 1 cut(s) 117
HinfI GANTC 3 cut(s) 428, 656, 1046
HpaII CCGG 1 cut(s) 963
HphI GGTGA 1 cut(s) 356
Hpy166II GTNNAC 2 cut(s) 117, 191
Hpy188I TCNGA 4 cut(s) 323, 518, 718, 728
Hpy188III TCNNGA 8 cut(s) 103, 458, 704, 852, 863, 908, 1010, 1111
Hpy8I GTNNAC 2 cut(s) 117, 191
HpyAV CCTTC 4 cut(s) 44, 100, 364, 849
HpyCH4III ACNGT 2 cut(s) 732, 971
HpyCH4IV ACGT 1 cut(s) 844
HpyCH4V TGCA 9 cut(s) 96, 179, 260, 287, 391, 425, 593, 887, 1035
HpyF10VI GCNNNNNNNGC 6 cut(s) 167, 176, 563, 602, 990, 1063
HpyF3I CTNAG 2 cut(s) 574, 702
HpySE526I ACGT 1 cut(s) 844
Hsp92II CATG 4 cut(s) 106, 367, 461, 866
HspAI GCGC 2 cut(s) 536, 982
KflI GGGWCCC 1 cut(s) 778
KroI GCCGGC 1 cut(s) 962
KroNI GCCGGC 1 cut(s) 964
Kzo9I GATC 5 cut(s) 109, 291, 373, 487, 721
LmnI GCTCC 2 cut(s) 610, 989
Lsp1109I GCAGC 3 cut(s) 191, 590, 605
LweI GCATC 3 cut(s) 157, 400, 904
MaeI CTAG 2 cut(s) 585, 1095
MaeII ACGT 1 cut(s) 844
MaeIII GTNAC 3 cut(s) 268, 304, 814
MalI GATC 5 cut(s) 111, 293, 375, 489, 723
MboI GATC 5 cut(s) 109, 291, 373, 487, 721
MboII GAAGA 6 cut(s) 176, 449, 518, 540, 753, 839
MflI RGATCY 1 cut(s) 291
MhlI GDGCHC 3 cut(s) 256, 607, 957
MlsI TGGCCA 1 cut(s) 876
MluCI AATT 6 cut(s) 74, 83, 399, 461, 931, 1116
MluNI TGGCCA 1 cut(s) 876
MlyI GAGTC 1 cut(s) 665
MmeI TCCRAC 2 cut(s) 505, 751
Mox20I TGGCCA 1 cut(s) 876
MroNI GCCGGC 1 cut(s) 962
MroXI GAANNNNTTC 1 cut(s) 195
MscI TGGCCA 1 cut(s) 876
MseI TTAA 2 cut(s) 72, 222
MslI CAYNNNNRTG 1 cut(s) 101
Msp20I TGGCCA 1 cut(s) 876
MspI CCGG 1 cut(s) 963
MspR9I CCNGG 2 cut(s) 274, 633
Mva1269I GAATGC 2 cut(s) 27, 216
MvaI CCWGG 2 cut(s) 274, 633
MwoI GCNNNNNNNGC 6 cut(s) 167, 176, 563, 602, 990, 1063
NaeI GCCGGC 1 cut(s) 964
NdeII GATC 5 cut(s) 109, 291, 373, 487, 721
NgoMIV GCCGGC 1 cut(s) 962
NlaIII CATG 4 cut(s) 106, 367, 461, 866
NlaIV GGNNCC 5 cut(s) 293, 472, 606, 779, 780
NmuCI GTSAC 1 cut(s) 304
NspI RCATGY 1 cut(s) 367
PaeR7I CTCGAG 1 cut(s) 663
PagI TCATGA 3 cut(s) 102, 457, 862
PaqCI CACCTGC 1 cut(s) 265
PcsI WCGNNNNNNNCGW 1 cut(s) 850
PctI GAATGC 2 cut(s) 27, 216
PdiI GCCGGC 1 cut(s) 964
PdmI GAANNNNTTC 1 cut(s) 195
PfeI GAWTC 2 cut(s) 428, 1046
PkrI GCNGC 3 cut(s) 181, 580, 595
PleI GAGTC 1 cut(s) 664
PpsI GAGTC 1 cut(s) 664
PpuMI RGGWCCY 1 cut(s) 778
PsiI TTATAA 1 cut(s) 410
Psp5II RGGWCCY 1 cut(s) 778
Psp6I CCWGG 2 cut(s) 272, 631
PspGI CCWGG 2 cut(s) 272, 631
PspN4I GGNNCC 5 cut(s) 293, 472, 606, 779, 780
PspPI GGNCC 4 cut(s) 4, 635, 778, 974
PspPPI RGGWCCY 1 cut(s) 778
PspXI VCTCGAGB 1 cut(s) 663
PstI CTGCAG 1 cut(s) 181
PstNI CAGNNNCTG 1 cut(s) 431
PsuI RGATCY 1 cut(s) 291
RsaI GTAC 4 cut(s) 630, 922, 1084, 1123
RsaNI GTAC 4 cut(s) 629, 921, 1083, 1122
RseI CAYNNNNRTG 1 cut(s) 101
SaqAI TTAA 2 cut(s) 72, 222
SatI GCNGC 3 cut(s) 180, 579, 594
Sau3AI GATC 5 cut(s) 109, 291, 373, 487, 721
Sau96I GGNCC 4 cut(s) 4, 635, 778, 974
SchI GAGTC 1 cut(s) 665
ScrFI CCNGG 2 cut(s) 274, 633
SduI GDGCHC 3 cut(s) 256, 607, 957
SfaNI GCATC 3 cut(s) 157, 400, 904
SfcI CTRYAG 1 cut(s) 177
Sfr274I CTCGAG 1 cut(s) 663
SinI GGWCC 4 cut(s) 4, 635, 778, 974
SlaI CTCGAG 1 cut(s) 663
SmiMI CAYNNNNRTG 1 cut(s) 101
SmlI CTYRAG 1 cut(s) 663
SmoI CTYRAG 1 cut(s) 663
Sse9I AATT 6 cut(s) 74, 83, 399, 461, 931, 1116
SsiI CCGC 2 cut(s) 7, 468
SspMI CTAG 2 cut(s) 585, 1095
StyD4I CCNGG 2 cut(s) 272, 631
StyI CCWWGG 2 cut(s) 501, 773
TaaI ACNGT 2 cut(s) 732, 971
TaiI ACGT 1 cut(s) 847
TaqI TCGA 3 cut(s) 42, 490, 664
TaqII GACCGA 2 cut(s) 102, 114
TasI AATT 6 cut(s) 74, 83, 399, 461, 931, 1116
TfiI GAWTC 2 cut(s) 428, 1046
Tru1I TTAA 2 cut(s) 72, 222
Tru9I TTAA 2 cut(s) 72, 222
TscAI CASTG 1 cut(s) 1059
TseFI GTSAC 1 cut(s) 304
TseI GCWGC 3 cut(s) 179, 578, 593
Tsp45I GTSAC 1 cut(s) 304
TspDTI ATGAA 3 cut(s) 119, 474, 956
TspGWI ACGGA 3 cut(s) 21, 62, 368
TspRI CASTG 1 cut(s) 1059
VpaK11BI GGWCC 4 cut(s) 4, 635, 778, 974
XagI CCTNNNNNAGG 2 cut(s) 630, 991
XapI RAATTY 2 cut(s) 74, 931
XceI RCATGY 1 cut(s) 367
XhoI CTCGAG 1 cut(s) 663
XmnI GAANNNNTTC 1 cut(s) 195
XspI CTAG 2 cut(s) 585, 1095
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.