Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0003388

Physical Location & Seq

Genomic Coordinates Reverse (-)

9197358 .. 9201716

Gene Structure 4359 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g16100.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGACCGCAAGCTTGTGGTTTTGGGCATTCCATGGGATATTGATACGGAAGGGTTGAGAGAGTATATGTGCAAATATGGGGAATTGGAGGATTGCATTGTCATGAAGGAGCGGTCAACTGGCCGATCTCGTGGATTTGGATATGTGACGTTTGCGTCAGCTGAAGATGCCAAGAGTGTTGCATCGAGTGAACACTTTCTGGGAAATAGAATGCTGGAAGTTAAAGTGGCTACCCCAAAGGAAGAGATGAGAACACCTGCAAGAAAAGTTACCAGGATATTTGTTGCAAGGATCCCGCAATCTGTGACAGAAGCAAACTTTCGAAGTCATTTTGGGAAGTATGGAGAGATAACAGATCTATACATGCCAAAGGAGCAAGGCTCAAAAATGCATCGAGGAATTGGGTTCATAACGTTTGAAAATGCAGACTCTGTCGAAAGTTTGATGGTTGATACTCATGAGTTGGGAGGTTCCAATGTAGTTGTTGATCGAGCAACACCTAAGGAGGATGACTTCAAACCAGTGGCCAGAATGCCAGCAGCTCAGCAGGGTGGATATGGTGCATATAATGCGTATATCTCAGCAGCTACTAGATATGCAGCCCTTGGTGCTCCCACCTTGTATGATCATCCACCTCATCCAGGGCCTGCATATGGAAGAGGAGAGTCTGCTCGAGGATTGAGCAGAAAGATTTTTGTTGGGAGGCTTCCTCAGGAGGCAACTTCTGAAGATCTCCGCCAGTATTTTGGTAGATTTGGCCGTATATTGGATGTTTATGTTCCCAGAGATCCCAAAAGAACTGGCCATAGAGGATTTGGTTTTGTAACCTTTGGAGAAGATGGTGTAGCAGATCGTGTATCACGAAGATCTCATGAGATCTGCGGTCAGCAGGTTGCAATAGACACTGCCACACCTCTTGATGAAGCTGGTACAAGTGGAAACTTTATGATGAACAATGTAGAACCCTATGGTGGATATGGTGGTCCTGTGCGCTCCTATAGCAGGATGTATGGAAGTCTGGATTTTGATGATTGGGGCTATGGAATGAGCAGTGGGAGACCATCAAGAGCAGATTGGAGGTACAGGCCATACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005849 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

RRM_1

Protein Analysis

365

Amino Acids

40.58

Weight (kDa)

7.71

Isoelectric Point (pI)

38.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	5 - 62	2e-11	RNA recognition motif
RRM_1	PF00076	93 - 149	7.9e-11	RNA recognition motif
RRM_1	PF00076	231 - 279	5.1e-13	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003388)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36960 AT4G36960
fragaria_vesca	FvH4_1g16100 FvH4_1g16100 FvH4_1g16100 FvH4_1g16100 FvH4_1g16100 FvH4_1g16100 FvH4_1g16100
malus_domestica	MD02G1172600.v1.1 MD15G1284600.v1.1
prunus_persica	Prupe.7G132900_v2.0.a1
pyrus_communis	pycom02g13910 pycom15g24730
rosa_chinensis	RchiOBHm_Chr2g0105721
rosa_laevigata	RLG00000017453
rosa_multiflora	Rmu_sc0000594.1_g000060 Rmu_sc0001051.1_g000061 Rmu_sc0039055.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002090 Rroxscaffold_1G00038100 Rroxscaffold_2G00137950 Rroxscaffold_5G00348070
rosa_rugosa	Rorug01G0167000 Rorug02G0129800 Rorug02G0283100
rosa_samantha	Rh2AG181200 Rh2BG190300 Rh2CG185400 Rh5BG197900 Rh5BG450300 Rh5CG472700 Rh5DG291600 Rh5DG464000 Rh6AG247300
rosa_wichuraiana	Rw2G014170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	265
AasI	GACNNNNNNGTC	1 cut(s)	154
Acc36I	ACCTGC	2 cut(s)	265, 880
AccBSI	CCGCTC	1 cut(s)	112
AciI	CCGC	5 cut(s)	7, 112, 296, 736, 882
AclI	AACGTT	1 cut(s)	413
AclWI	GGATC	3 cut(s)	286, 299, 782
AcoI	YGGCCR	4 cut(s)	121, 525, 757, 802
AcuI	CTGAAG	2 cut(s)	183, 747
AfaI	GTAC	2 cut(s)	931, 1082
AfiI	CCNNNNNNNGG	5 cut(s)	641, 653, 766, 971, 1002
AgsI	TTSAA	2 cut(s)	419, 517
AjnI	CCWGG	2 cut(s)	272, 640
AluBI	AGCT	5 cut(s)	13, 161, 542, 587, 926
AluI	AGCT	5 cut(s)	13, 161, 542, 587, 926
Alw21I	GWGCWC	1 cut(s)	613
Alw26I	GTCTC	1 cut(s)	1051
AlwI	GGATC	3 cut(s)	286, 299, 782
AlwNI	CAGNNNCTG	2 cut(s)	431, 647
Ama87I	CYCGRG	1 cut(s)	672
AoxI	GGCC	6 cut(s)	121, 525, 644, 757, 802, 1085
ApeKI	GCWGC	3 cut(s)	539, 584, 599
Asp700I	GAANNNNTTC	1 cut(s)	195
AspLEI	GCGC	1 cut(s)	993
AspS9I	GGNCC	3 cut(s)	4, 644, 983
AsuII	TTCGAA	1 cut(s)	322
AvaI	CYCGRG	1 cut(s)	672
AvaII	GGWCC	2 cut(s)	4, 983
AxyI	CCTNAGG	2 cut(s)	501, 711
BalI	TGGCCA	2 cut(s)	527, 804
BamHI	GGATCC	1 cut(s)	291
BauI	CACGAG	1 cut(s)	129
Bbv12I	GWGCWC	1 cut(s)	613
BbvI	GCAGC	3 cut(s)	551, 596, 611
BccI	CCATC	3 cut(s)	439, 833, 1069
BceAI	ACGGC	1 cut(s)	744
BciT130I	CCWGG	2 cut(s)	274, 642
BclI	TGATCA	1 cut(s)	625
BcoDI	GTCTC	1 cut(s)	1051
BfaI	CTAG	2 cut(s)	591, 1093
BfmI	CTRYAG	1 cut(s)	997
BfuAI	ACCTGC	2 cut(s)	265, 880
BglII	AGATCT	4 cut(s)	355, 730, 866, 876
BisI	GCNGC	3 cut(s)	540, 585, 600
BlpI	GCTNAGC	1 cut(s)	543
BlsI	GCNGC	3 cut(s)	541, 586, 601
Bme1390I	CCNGG	2 cut(s)	274, 642
Bme18I	GGWCC	2 cut(s)	4, 983
BmeT110I	CYCGRG	1 cut(s)	672
BmgT120I	GGNCC	3 cut(s)	4, 644, 983
BmiI	GGNNCC	2 cut(s)	293, 472
BmrFI	CCNGG	2 cut(s)	274, 642
BmsI	GCATC	3 cut(s)	157, 191, 400
BplI	GAGNNNNNCTC	4 cut(s)	365, 397, 694, 726
Bpu1102I	GCTNAGC	1 cut(s)	543
Bpu14I	TTCGAA	1 cut(s)	322
BsaI	GGTCTC	1 cut(s)	1051
BsaJI	CCNNGG	3 cut(s)	32, 604, 641
Bsc4I	CCNNNNNNNGG	5 cut(s)	641, 653, 766, 971, 1002
Bse1I	ACTGG	4 cut(s)	124, 521, 739, 805
Bse21I	CCTNAGG	2 cut(s)	501, 711
BseBI	CCWGG	2 cut(s)	274, 642
BseDI	CCNNGG	3 cut(s)	32, 604, 641
BseGI	GGATG	5 cut(s)	514, 628, 637, 775, 1011
BseLI	CCNNNNNNNGG	5 cut(s)	641, 653, 766, 971, 1002
BseMII	CTCAG	3 cut(s)	557, 594, 725
BseNI	ACTGG	4 cut(s)	124, 521, 739, 805
BseRI	GAGGAG	1 cut(s)	675
BseXI	GCAGC	3 cut(s)	551, 596, 611
BshFI	GGCC	6 cut(s)	123, 527, 646, 759, 804, 1087
BsiHKAI	GWGCWC	1 cut(s)	613
BsiHKCI	CYCGRG	1 cut(s)	672
BslI	CCNNNNNNNGG	5 cut(s)	641, 653, 766, 971, 1002
BsmAI	GTCTC	1 cut(s)	1051
BsmI	GAATGC	3 cut(s)	27, 216, 537
BsnI	GGCC	6 cut(s)	123, 527, 646, 759, 804, 1087
Bso31I	GGTCTC	1 cut(s)	1051
BsoBI	CYCGRG	1 cut(s)	672
Bsp119I	TTCGAA	1 cut(s)	322
Bsp1286I	GDGCHC	1 cut(s)	613
Bsp1720I	GCTNAGC	1 cut(s)	543
Bsp19I	CCATGG	1 cut(s)	32
BspACI	CCGC	5 cut(s)	7, 112, 296, 736, 882
BspANI	GGCC	6 cut(s)	123, 527, 646, 759, 804, 1087
BspCNI	CTCAG	3 cut(s)	556, 593, 724
BspHI	TCATGA	3 cut(s)	102, 457, 871
BspLI	GGNNCC	2 cut(s)	293, 472
BspMI	ACCTGC	2 cut(s)	265, 880
BspPI	GGATC	3 cut(s)	286, 299, 782
BspT104I	TTCGAA	1 cut(s)	322
BspTNI	GGTCTC	1 cut(s)	1051
BsrBI	CCGCTC	1 cut(s)	112
BsrI	ACTGG	4 cut(s)	124, 521, 739, 805
BssECI	CCNNGG	3 cut(s)	32, 604, 641
BssSI	CACGAG	1 cut(s)	129
BssT1I	CCWWGG	2 cut(s)	32, 604
Bst2BI	CACGAG	1 cut(s)	129
Bst2UI	CCWGG	2 cut(s)	274, 642
Bst6I	CTCTTC	2 cut(s)	237, 652
BstAPI	GCANNNNNTGC	1 cut(s)	569
BstBI	TTCGAA	1 cut(s)	322
BstC8I	GCNNGC	3 cut(s)	11, 537, 648
BstDEI	CTNAG	4 cut(s)	501, 543, 580, 711
BstDSI	CCRYGG	1 cut(s)	32
BstENI	CCTNNNNNAGG	2 cut(s)	639, 1000
BstF5I	GGATG	5 cut(s)	514, 628, 637, 775, 1011
BstHHI	GCGC	1 cut(s)	993
BstMAI	GTCTC	1 cut(s)	1051
BstMWI	GCNNNNNNNGC	5 cut(s)	167, 373, 569, 608, 999
BstNI	CCWGG	2 cut(s)	274, 642
BstNSI	RCATGY	1 cut(s)	367
BstSCI	CCNGG	2 cut(s)	272, 640
BstSFI	CTRYAG	1 cut(s)	997
BstV1I	GCAGC	3 cut(s)	551, 596, 611
BstX2I	RGATCY	6 cut(s)	291, 355, 730, 787, 866, 876
BstXI	CCANNNNNNTGG	1 cut(s)	746
BstYI	RGATCY	6 cut(s)	291, 355, 730, 787, 866, 876
Bsu36I	CCTNAGG	2 cut(s)	501, 711
BsuRI	GGCC	6 cut(s)	123, 527, 646, 759, 804, 1087
BtgI	CCRYGG	1 cut(s)	32
BtsCI	GGATG	5 cut(s)	514, 628, 637, 775, 1011
BtsI	GCAGTG	2 cut(s)	903, 1057
BtsIMutI	CAGTG	3 cut(s)	528, 903, 1057
BveI	ACCTGC	2 cut(s)	265, 880
Cac8I	GCNNGC	3 cut(s)	11, 537, 648
CaiI	CAGNNNCTG	2 cut(s)	431, 647
CciI	TCATGA	3 cut(s)	102, 457, 871
CfoI	GCGC	1 cut(s)	993
Cfr13I	GGNCC	3 cut(s)	4, 644, 983
CseI	GACGC	1 cut(s)	144
Csp6I	GTAC	2 cut(s)	930, 1081
CspCI	CAANNNNNGTGG	2 cut(s)	898, 933
CviAII	CATG	5 cut(s)	33, 103, 364, 458, 872
CviQI	GTAC	2 cut(s)	930, 1081
DdeI	CTNAG	4 cut(s)	501, 543, 580, 711
DrdI	GACNNNNNNGTC	1 cut(s)	154
DseDI	GACNNNNNNGTC	1 cut(s)	154
EaeI	YGGCCR	4 cut(s)	121, 525, 757, 802
Eam1104I	CTCTTC	2 cut(s)	237, 652
EarI	CTCTTC	2 cut(s)	237, 652
EciI	GGCGGA	1 cut(s)	725
Eco130I	CCWWGG	2 cut(s)	32, 604
Eco31I	GGTCTC	1 cut(s)	1051
Eco47I	GGWCC	2 cut(s)	4, 983
Eco57I	CTGAAG	2 cut(s)	183, 747
Eco81I	CCTNAGG	2 cut(s)	501, 711
Eco88I	CYCGRG	1 cut(s)	672
EcoNI	CCTNNNNNAGG	2 cut(s)	639, 1000
EcoO109I	RGGNCCY	1 cut(s)	644
EcoRII	CCWGG	2 cut(s)	272, 640
EcoT14I	CCWWGG	2 cut(s)	32, 604
EcoT22I	ATGCAT	1 cut(s)	393
ErhI	CCWWGG	2 cut(s)	32, 604
FaeI	CATG	5 cut(s)	36, 106, 367, 461, 875
FatI	CATG	5 cut(s)	32, 102, 363, 457, 871
FauI	CCCGC	1 cut(s)	303
FauNDI	CATATG	1 cut(s)	652
FbaI	TGATCA	1 cut(s)	625
Fnu4HI	GCNGC	3 cut(s)	540, 585, 600
FokI	GGATG	5 cut(s)	521, 615, 624, 782, 1018
Fsp4HI	GCNGC	3 cut(s)	540, 585, 600
FspBI	CTAG	2 cut(s)	591, 1093
GlaI	GCGC	1 cut(s)	992
GluI	GCNGC	3 cut(s)	540, 585, 600
HaeIII	GGCC	6 cut(s)	123, 527, 646, 759, 804, 1087
HgaI	GACGC	1 cut(s)	144
HhaI	GCGC	1 cut(s)	993
Hin1II	CATG	5 cut(s)	36, 106, 367, 461, 875
Hin6I	GCGC	1 cut(s)	991
HinP1I	GCGC	1 cut(s)	991
HincII	GTYRAC	1 cut(s)	117
HindII	GTYRAC	1 cut(s)	117
HindIII	AAGCTT	1 cut(s)	11
HinfI	GANTC	2 cut(s)	428, 665
Hpy166II	GTNNAC	2 cut(s)	117, 191
Hpy188I	TCNGA	1 cut(s)	727
Hpy188III	TCNNGA	8 cut(s)	103, 458, 713, 861, 872, 917, 1019, 1065
Hpy8I	GTNNAC	2 cut(s)	117, 191
HpyAV	CCTTC	2 cut(s)	44, 100
HpyCH4IV	ACGT	2 cut(s)	149, 413
HpyF10VI	GCNNNNNNNGC	5 cut(s)	167, 373, 569, 608, 999
HpyF3I	CTNAG	4 cut(s)	501, 543, 580, 711
HpySE526I	ACGT	2 cut(s)	149, 413
Hsp92II	CATG	5 cut(s)	36, 106, 367, 461, 875
HspAI	GCGC	1 cut(s)	991
Ksp22I	TGATCA	1 cut(s)	625
LmnI	GCTCC	4 cut(s)	109, 373, 616, 998
Lsp1109I	GCAGC	3 cut(s)	551, 596, 611
LweI	GCATC	3 cut(s)	157, 191, 400
MaeI	CTAG	2 cut(s)	591, 1093
MaeII	ACGT	2 cut(s)	149, 413
MaeIII	GTNAC	4 cut(s)	145, 268, 304, 823
MbiI	CCGCTC	1 cut(s)	112
MboII	GAAGA	6 cut(s)	176, 254, 669, 740, 848, 876
MflI	RGATCY	6 cut(s)	291, 355, 730, 787, 866, 876
MhlI	GDGCHC	1 cut(s)	613
MlsI	TGGCCA	2 cut(s)	527, 804
MluCI	AATT	2 cut(s)	83, 399
MluNI	TGGCCA	2 cut(s)	527, 804
MlyI	GAGTC	2 cut(s)	422, 674
Mox20I	TGGCCA	2 cut(s)	527, 804
Mph1103I	ATGCAT	1 cut(s)	393
MroXI	GAANNNNTTC	1 cut(s)	195
MscI	TGGCCA	2 cut(s)	527, 804
MseI	TTAA	1 cut(s)	222
MslI	CAYNNNNRTG	1 cut(s)	101
Msp20I	TGGCCA	2 cut(s)	527, 804
MspA1I	CMGCKG	1 cut(s)	161
MspR9I	CCNGG	2 cut(s)	274, 642
Mva1269I	GAATGC	3 cut(s)	27, 216, 537
MvaI	CCWGG	2 cut(s)	274, 642
MwoI	GCNNNNNNNGC	5 cut(s)	167, 373, 569, 608, 999
NcoI	CCATGG	1 cut(s)	32
NdeI	CATATG	1 cut(s)	652
NlaIII	CATG	5 cut(s)	36, 106, 367, 461, 875
NlaIV	GGNNCC	2 cut(s)	293, 472
NmuCI	GTSAC	2 cut(s)	145, 304
NsiI	ATGCAT	1 cut(s)	393
NspI	RCATGY	1 cut(s)	367
NspV	TTCGAA	1 cut(s)	322
PaeR7I	CTCGAG	1 cut(s)	672
PagI	TCATGA	3 cut(s)	102, 457, 871
PaqCI	CACCTGC	1 cut(s)	265
PcsI	WCGNNNNNNNCGW	1 cut(s)	859
PctI	GAATGC	3 cut(s)	27, 216, 537
PdmI	GAANNNNTTC	1 cut(s)	195
PflFI	GACNNNGTC	1 cut(s)	431
PkrI	GCNGC	3 cut(s)	541, 586, 601
PleI	GAGTC	2 cut(s)	422, 673
PpsI	GAGTC	2 cut(s)	422, 673
Psp1406I	AACGTT	1 cut(s)	413
Psp6I	CCWGG	2 cut(s)	272, 640
PspGI	CCWGG	2 cut(s)	272, 640
PspN4I	GGNNCC	2 cut(s)	293, 472
PspPI	GGNCC	3 cut(s)	4, 644, 983
PspXI	VCTCGAGB	1 cut(s)	672
PstNI	CAGNNNCTG	2 cut(s)	431, 647
PsuI	RGATCY	6 cut(s)	291, 355, 730, 787, 866, 876
PsyI	GACNNNGTC	1 cut(s)	431
PvuII	CAGCTG	1 cut(s)	161
RsaI	GTAC	2 cut(s)	931, 1082
RsaNI	GTAC	2 cut(s)	930, 1081
RseI	CAYNNNNRTG	1 cut(s)	101
SaqAI	TTAA	1 cut(s)	222
SatI	GCNGC	3 cut(s)	540, 585, 600
Sau96I	GGNCC	3 cut(s)	4, 644, 983
SchI	GAGTC	2 cut(s)	422, 674
ScrFI	CCNGG	2 cut(s)	274, 642
SduI	GDGCHC	1 cut(s)	613
SfaNI	GCATC	3 cut(s)	157, 191, 400
SfcI	CTRYAG	1 cut(s)	997
Sfr274I	CTCGAG	1 cut(s)	672
SfuI	TTCGAA	1 cut(s)	322
SinI	GGWCC	2 cut(s)	4, 983
SlaI	CTCGAG	1 cut(s)	672
SmiMI	CAYNNNNRTG	1 cut(s)	101
SmlI	CTYRAG	1 cut(s)	672
SmoI	CTYRAG	1 cut(s)	672
Sse9I	AATT	2 cut(s)	83, 399
SsiI	CCGC	5 cut(s)	7, 112, 296, 736, 882
SspMI	CTAG	2 cut(s)	591, 1093
StyD4I	CCNGG	2 cut(s)	272, 640
StyI	CCWWGG	2 cut(s)	32, 604
TaiI	ACGT	2 cut(s)	152, 416
TaqI	TCGA	6 cut(s)	185, 322, 394, 435, 490, 673
TasI	AATT	2 cut(s)	83, 399
Tru1I	TTAA	1 cut(s)	222
Tru9I	TTAA	1 cut(s)	222
TscAI	CASTG	3 cut(s)	528, 910, 1057
TseFI	GTSAC	2 cut(s)	145, 304
TseI	GCWGC	3 cut(s)	539, 584, 599
Tsp45I	GTSAC	2 cut(s)	145, 304
TspDTI	ATGAA	4 cut(s)	119, 397, 936, 965
TspGWI	ACGGA	1 cut(s)	62
TspRI	CASTG	3 cut(s)	528, 910, 1057
Tth111I	GACNNNGTC	1 cut(s)	431
VpaK11BI	GGWCC	2 cut(s)	4, 983
XagI	CCTNNNNNAGG	2 cut(s)	639, 1000
XceI	RCATGY	1 cut(s)	367
XcmI	CCANNNNNNNNNTGG	1 cut(s)	812
XhoI	CTCGAG	1 cut(s)	672
XmnI	GAANNNNTTC	1 cut(s)	195
XspI	CTAG	2 cut(s)	591, 1093
Zsp2I	ATGCAT	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.