Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003388

Physical Location & Seq

Genomic Coordinates Forward (+)

55510944 .. 55514737

Gene Structure 3794 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00038100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGGTTATAGATTTGTAGGTTTTGGAATATGGATGAGGGGATTGGTTATTGATTGGTTTCATTTGACTTTTGTGATTGTGTTTCAGATTTTGGGCATTCCATGGGATATTGATACGAGAGAGAGAGAGTATATGAGCAAATATGTGGAATTGGAGGATTGTATTGAGCGGTCAACCGGCCGATCTCGTGGATTTGGATATGTAAAGTTTGCATCAGCTGAAGATGCCAAGCTGAGTTGTCTTATAGCTTCGGTTAGATCCACTTTCAGTATATCAAAATGCCTAATTGCTAACATCTTTCTAGTTGCGAGTGTGTCATCAAGTGAGAACTTTCTTGGAAGAGATGAGAGCATCCGCAAGAAAAGTTACCAGGATATTTGTTGCAAGGATCCCACAATCTATGATAGAAGCGAACTTTTGAGTCATTTTGGGAAATATGGAGAGATAACAGATTTATACATGCCGAAGGTTCTCTATCTATCTATAATTTTGTTGGTCCAGAACATTAAACCTTTATTCCTGTTGTTTGATATGGTTTTCCTTGTTTTGGCTACCGTTGGTTTCAATGTTAAAATTGAAAAATATCATTTAGGTTTCAATAACTTTCATTTTCATGCTTTGTATGCAATGCGTATTGCTATTGAATCAGAAAGCCAAGAATTGGAGCTGGATCTTTCAAGTTTGGGTGCTGTAAATAAAATGTTTGCTGCCCTTTGTAGGTTTGGTTGGCTTATTTACTGCTTATTTAACCTCCAAAGTTTTAGTCTCTTGGCTCCTATAACAACAAAGCTTTTAGGTTTCGAGGAATATGGTAATGGTCTTAGGTTTGATGCCAATGGAAGTGACACACCAAATGTAGATAGTATGATGCATATTCTGGGAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005849 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

RRM_1

Protein Analysis

295

Amino Acids

33.71

Weight (kDa)

5.73

Isoelectric Point (pI)

48.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003388)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36960 AT4G36960
fragaria_vesca	FvH4_1g16100 FvH4_1g16100 FvH4_1g16100 FvH4_1g16100 FvH4_1g16100 FvH4_1g16100 FvH4_1g16100
malus_domestica	MD02G1172600.v1.1 MD15G1284600.v1.1
prunus_persica	Prupe.7G132900_v2.0.a1
pyrus_communis	pycom02g13910 pycom15g24730
rosa_chinensis	RchiOBHm_Chr2g0105721
rosa_laevigata	RLG00000017453
rosa_multiflora	Rmu_sc0000594.1_g000060 Rmu_sc0001051.1_g000061 Rmu_sc0039055.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002090 Rroxscaffold_1G00038100 Rroxscaffold_2G00137950 Rroxscaffold_5G00348070
rosa_rugosa	Rorug01G0167000 Rorug02G0129800 Rorug02G0283100
rosa_samantha	Rh2AG181200 Rh2BG190300 Rh2CG185400 Rh5BG197900 Rh5BG450300 Rh5CG472700 Rh5DG291600 Rh5DG464000 Rh6AG247300
rosa_wichuraiana	Rw2G014170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	661
AccBSI	CCGCTC	1 cut(s)	169
AciI	CCGC	2 cut(s)	169, 355
AclWI	GGATC	4 cut(s)	252, 383, 396, 678
AcoI	YGGCCR	1 cut(s)	178
AcuI	CTGAAG	1 cut(s)	240
AfiI	CCNNNNNNNGG	3 cut(s)	547, 661, 717
AgsI	TTSAA	5 cut(s)	565, 578, 598, 644, 678
AjnI	CCWGG	1 cut(s)	369
AluBI	AGCT	5 cut(s)	218, 232, 248, 667, 790
AluI	AGCT	5 cut(s)	218, 232, 248, 667, 790
Alw26I	GTCTC	1 cut(s)	770
AlwI	GGATC	4 cut(s)	252, 383, 396, 678
AoxI	GGCC	1 cut(s)	178
ApeKI	GCWGC	1 cut(s)	707
ArsI	GACNNNNNNTTYG	2 cut(s)	748, 780
AspS9I	GGNCC	1 cut(s)	496
AvaII	GGWCC	1 cut(s)	496
BamHI	GGATCC	1 cut(s)	388
BauI	CACGAG	1 cut(s)	186
BbvI	GCAGC	1 cut(s)	694
BciT130I	CCWGG	1 cut(s)	371
BcoDI	GTCTC	1 cut(s)	770
BfaI	CTAG	1 cut(s)	302
BisI	GCNGC	1 cut(s)	708
BlsI	GCNGC	1 cut(s)	709
Bme1390I	CCNGG	1 cut(s)	371
Bme18I	GGWCC	1 cut(s)	496
BmgT120I	GGNCC	1 cut(s)	496
BmiI	GGNNCC	2 cut(s)	390, 774
BmrFI	CCNGG	1 cut(s)	371
BmsI	GCATC	5 cut(s)	214, 221, 360, 820, 858
BsaJI	CCNNGG	1 cut(s)	101
Bsc4I	CCNNNNNNNGG	3 cut(s)	547, 661, 717
Bse118I	RCCGGY	1 cut(s)	176
Bse3DI	GCAATG	1 cut(s)	633
BseBI	CCWGG	1 cut(s)	371
BseDI	CCNNGG	1 cut(s)	101
BseGI	GGATG	2 cut(s)	39, 351
BseLI	CCNNNNNNNGG	3 cut(s)	547, 661, 717
BseMI	GCAATG	1 cut(s)	633
BseMII	CTCAG	1 cut(s)	224
BseX3I	CGGCCG	1 cut(s)	178
BseXI	GCAGC	1 cut(s)	694
Bsh1285I	CGRYCG	1 cut(s)	181
BshFI	GGCC	1 cut(s)	180
BsiEI	CGRYCG	1 cut(s)	181
BsiSI	CCGG	1 cut(s)	177
BslI	CCNNNNNNNGG	3 cut(s)	547, 661, 717
BsmAI	GTCTC	1 cut(s)	770
BsmI	GAATGC	1 cut(s)	96
BsnI	GGCC	1 cut(s)	180
Bsp143I	GATC	4 cut(s)	182, 257, 388, 670
Bsp19I	CCATGG	1 cut(s)	101
BspACI	CCGC	2 cut(s)	169, 355
BspANI	GGCC	1 cut(s)	180
BspCNI	CTCAG	1 cut(s)	225
BspLI	GGNNCC	2 cut(s)	390, 774
BspPI	GGATC	4 cut(s)	252, 383, 396, 678
BsrBI	CCGCTC	1 cut(s)	169
BsrDI	GCAATG	1 cut(s)	633
BsrFI	RCCGGY	1 cut(s)	176
BssAI	RCCGGY	1 cut(s)	176
BssECI	CCNNGG	1 cut(s)	101
BssMI	GATC	4 cut(s)	182, 257, 388, 670
BssSI	CACGAG	1 cut(s)	186
BssT1I	CCWWGG	1 cut(s)	101
Bst2BI	CACGAG	1 cut(s)	186
Bst2UI	CCWGG	1 cut(s)	371
Bst4CI	ACNGT	1 cut(s)	556
Bst6I	CTCTTC	1 cut(s)	334
BstDEI	CTNAG	2 cut(s)	233, 821
BstDSI	CCRYGG	1 cut(s)	101
BstF5I	GGATG	2 cut(s)	39, 351
BstKTI	GATC	4 cut(s)	185, 260, 391, 673
BstMAI	GTCTC	1 cut(s)	770
BstMBI	GATC	4 cut(s)	182, 257, 388, 670
BstMCI	CGRYCG	1 cut(s)	181
BstMWI	GCNNNNNNNGC	2 cut(s)	224, 623
BstNI	CCWGG	1 cut(s)	371
BstNSI	RCATGY	1 cut(s)	463
BstSCI	CCNGG	1 cut(s)	369
BstV1I	GCAGC	1 cut(s)	694
BstX2I	RGATCY	3 cut(s)	257, 388, 670
BstYI	RGATCY	3 cut(s)	257, 388, 670
BstZI	CGGCCG	1 cut(s)	178
BsuRI	GGCC	1 cut(s)	180
BtgI	CCRYGG	1 cut(s)	101
BtsCI	GGATG	2 cut(s)	39, 351
Cfr10I	RCCGGY	1 cut(s)	176
Cfr13I	GGNCC	1 cut(s)	496
CviAII	CATG	3 cut(s)	102, 460, 614
DdeI	CTNAG	2 cut(s)	233, 821
DpnI	GATC	4 cut(s)	184, 259, 390, 672
DpnII	GATC	4 cut(s)	182, 257, 388, 670
EaeI	YGGCCR	1 cut(s)	178
EagI	CGGCCG	1 cut(s)	178
Eam1104I	CTCTTC	1 cut(s)	334
EarI	CTCTTC	1 cut(s)	334
EclXI	CGGCCG	1 cut(s)	178
Eco130I	CCWWGG	1 cut(s)	101
Eco47I	GGWCC	1 cut(s)	496
Eco52I	CGGCCG	1 cut(s)	178
Eco57I	CTGAAG	1 cut(s)	240
EcoRII	CCWGG	1 cut(s)	369
EcoT14I	CCWWGG	1 cut(s)	101
EcoT22I	ATGCAT	1 cut(s)	873
ErhI	CCWWGG	1 cut(s)	101
FaeI	CATG	3 cut(s)	105, 463, 617
FatI	CATG	3 cut(s)	101, 459, 613
Fnu4HI	GCNGC	1 cut(s)	708
FokI	GGATG	2 cut(s)	46, 338
Fsp4HI	GCNGC	1 cut(s)	708
FspBI	CTAG	1 cut(s)	302
GluI	GCNGC	1 cut(s)	708
HaeIII	GGCC	1 cut(s)	180
HapII	CCGG	1 cut(s)	177
Hin1II	CATG	3 cut(s)	105, 463, 617
HincII	GTYRAC	1 cut(s)	174
HindII	GTYRAC	1 cut(s)	174
HindIII	AAGCTT	1 cut(s)	788
HinfI	GANTC	2 cut(s)	421, 644
HpaII	CCGG	1 cut(s)	177
Hpy166II	GTNNAC	1 cut(s)	174
Hpy188I	TCNGA	2 cut(s)	87, 649
Hpy188III	TCNNGA	1 cut(s)	499
Hpy8I	GTNNAC	1 cut(s)	174
HpyAV	CCTTC	1 cut(s)	460
HpyCH4III	ACNGT	1 cut(s)	556
HpyCH4V	TGCA	4 cut(s)	212, 384, 626, 871
HpyF10VI	GCNNNNNNNGC	2 cut(s)	224, 623
HpyF3I	CTNAG	2 cut(s)	233, 821
Hsp92II	CATG	3 cut(s)	105, 463, 617
Kzo9I	GATC	4 cut(s)	182, 257, 388, 670
LmnI	GCTCC	2 cut(s)	664, 778
LpnPI	CCDG	7 cut(s)	190, 356, 383, 512, 533, 653, 863
Lsp1109I	GCAGC	1 cut(s)	694
LweI	GCATC	5 cut(s)	214, 221, 360, 820, 858
MaeI	CTAG	1 cut(s)	302
MaeIII	GTNAC	2 cut(s)	365, 842
MalI	GATC	4 cut(s)	184, 259, 390, 672
MbiI	CCGCTC	1 cut(s)	169
MboI	GATC	4 cut(s)	182, 257, 388, 670
MboII	GAAGA	2 cut(s)	233, 351
MflI	RGATCY	3 cut(s)	257, 388, 670
MluCI	AATT	5 cut(s)	149, 285, 486, 573, 659
MlyI	GAGTC	1 cut(s)	430
MnlI	CCTC	4 cut(s)	30, 148, 761, 796
Mph1103I	ATGCAT	1 cut(s)	873
MseI	TTAA	3 cut(s)	507, 570, 747
MslI	CAYNNNNRTG	1 cut(s)	612
MspA1I	CMGCKG	1 cut(s)	218
MspI	CCGG	1 cut(s)	177
MspR9I	CCNGG	1 cut(s)	371
Mva1269I	GAATGC	1 cut(s)	96
MvaI	CCWGG	1 cut(s)	371
MwoI	GCNNNNNNNGC	2 cut(s)	224, 623
NcoI	CCATGG	1 cut(s)	101
NdeII	GATC	4 cut(s)	182, 257, 388, 670
NlaIII	CATG	3 cut(s)	105, 463, 617
NlaIV	GGNNCC	2 cut(s)	390, 774
NmuCI	GTSAC	1 cut(s)	842
NsiI	ATGCAT	1 cut(s)	873
NspI	RCATGY	1 cut(s)	463
PctI	GAATGC	1 cut(s)	96
PfeI	GAWTC	1 cut(s)	644
PflMI	CCANNNNNTGG	1 cut(s)	661
PkrI	GCNGC	1 cut(s)	709
PleI	GAGTC	1 cut(s)	429
PpsI	GAGTC	1 cut(s)	429
Psp6I	CCWGG	1 cut(s)	369
PspGI	CCWGG	1 cut(s)	369
PspN4I	GGNNCC	2 cut(s)	390, 774
PspPI	GGNCC	1 cut(s)	496
PsuI	RGATCY	3 cut(s)	257, 388, 670
PvuII	CAGCTG	1 cut(s)	218
RseI	CAYNNNNRTG	1 cut(s)	612
SaqAI	TTAA	3 cut(s)	507, 570, 747
SatI	GCNGC	1 cut(s)	708
Sau3AI	GATC	4 cut(s)	182, 257, 388, 670
Sau96I	GGNCC	1 cut(s)	496
SchI	GAGTC	1 cut(s)	430
ScrFI	CCNGG	1 cut(s)	371
SfaNI	GCATC	5 cut(s)	214, 221, 360, 820, 858
SinI	GGWCC	1 cut(s)	496
SmiMI	CAYNNNNRTG	1 cut(s)	612
Sse9I	AATT	5 cut(s)	149, 285, 486, 573, 659
SsiI	CCGC	2 cut(s)	169, 355
SspMI	CTAG	1 cut(s)	302
StyD4I	CCNGG	1 cut(s)	369
StyI	CCWWGG	1 cut(s)	101
TaaI	ACNGT	1 cut(s)	556
TaqI	TCGA	1 cut(s)	801
TasI	AATT	5 cut(s)	149, 285, 486, 573, 659
TfiI	GAWTC	1 cut(s)	644
Tru1I	TTAA	3 cut(s)	507, 570, 747
Tru9I	TTAA	3 cut(s)	507, 570, 747
TseFI	GTSAC	1 cut(s)	842
TseI	GCWGC	1 cut(s)	707
Tsp45I	GTSAC	1 cut(s)	842
TspDTI	ATGAA	3 cut(s)	50, 596, 602
Van91I	CCANNNNNTGG	1 cut(s)	661
VpaK11BI	GGWCC	1 cut(s)	496
XceI	RCATGY	1 cut(s)	463
XspI	CTAG	1 cut(s)	302
Zsp2I	ATGCAT	1 cut(s)	873

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.