Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003388

Physical Location & Seq

Genomic Coordinates Forward (+)

75947684 .. 75950744

Gene Structure 3061 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00137950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGTGAGTTTGATTTGGTACATGATGATGATGATGACTGTGTGTGAGAAAGAGGGTTTCTCTGCACCTGATATATCCATGGACCGCAAGCTTGTGGTTTTGGGCATTCCATGGGATATTGATACAGACGGGTTGAGAGAGTATATGAGCAAATATGGGGAATTGGAGGATTGTATTGTAATGAAGGAGCGGTCAACTGGCCGTTCTCGTGGATTTGGATATGTAACGTTTGCATCAGCTGAGGATGCCAAGAGCGTGTCATCAAGTGAGCACTTTCTTGGTAATAGAATGCTGGAAGTTAAAGTGGCTACCCCAAAGGAAGAGATGAGAGCACCTGCAAGAAAAGTCACCAGGATATTTGTTGCAAGGATCCCACAATCTGTGACAGAAGCAAACTTTCGAGGTCATTTTGGGAAATATGGAGAGATAACAGATTTATACATGCCGAAGGTTCTTTATCTATCTATGTGTACTTTCTTTTGGTACTTTTCAGGACACATGCACTCAAGTCATTCTAAGATCAAGGCTCAAAAATGCATAGAGGAATTGGGTTTATTACCTTTGAAAATGCAGGAAGATGACTTTAAACCAGTGGGCAGAATGCCAGCACCACAGGGTGGATATGGTGCATACAATGCGTATATCTCTGCAGCCACTAGATATGCAGCCCTTGGGGCTCCAACTTTGTATGATAATCCTCCACATCCAGGGCCCGTTTATGGAAGAGGGGAATCTGCTCGAGGATTGAGCAAAAAGATTTTTGTTGGAAGGCTGCCTCAGGAGGCAACTGCTGAAGATCTCCGCCAGTATTTTGGCAGATTTGGCCGTATATTAGATGTCTATGTTCCCAGGGATCCCAAAAGAACTGGCCATAGAGGATTTGGTTTTGTAACATTCGGGGAAGACGGTGTAGCAGATCGTGTATCACGAAGATCTCATGAGATCTGTGGACAGCAGAACCATATGGTGGATATGGTGGTCCTATGCGCCCTTATGGCAGGATGTATGGAAGTCTGGATTTTGATGACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005849 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

RRM_1

Protein Analysis

343

Amino Acids

38.68

Weight (kDa)

8.56

Isoelectric Point (pI)

42.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	31 - 86	1.7e-12	RNA recognition motif
RRM_1	PF00076	253 - 301	9.1e-13	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003388)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36960 AT4G36960
fragaria_vesca	FvH4_1g16100 FvH4_1g16100 FvH4_1g16100 FvH4_1g16100 FvH4_1g16100 FvH4_1g16100 FvH4_1g16100
malus_domestica	MD02G1172600.v1.1 MD15G1284600.v1.1
prunus_persica	Prupe.7G132900_v2.0.a1
pyrus_communis	pycom02g13910 pycom15g24730
rosa_chinensis	RchiOBHm_Chr2g0105721
rosa_laevigata	RLG00000017453
rosa_multiflora	Rmu_sc0000594.1_g000060 Rmu_sc0001051.1_g000061 Rmu_sc0039055.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002090 Rroxscaffold_1G00038100 Rroxscaffold_2G00137950 Rroxscaffold_5G00348070
rosa_rugosa	Rorug01G0167000 Rorug02G0129800 Rorug02G0283100
rosa_samantha	Rh2AG181200 Rh2BG190300 Rh2CG185400 Rh5BG197900 Rh5BG450300 Rh5CG472700 Rh5DG291600 Rh5DG464000 Rh6AG247300
rosa_wichuraiana	Rw2G014170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	343
Acc36I	ACCTGC	1 cut(s)	343
AccB7I	CCANNNNNTGG	2 cut(s)	617, 967
AccBSI	CCGCTC	1 cut(s)	190
AciI	CCGC	3 cut(s)	85, 190, 802
AclI	AACGTT	1 cut(s)	227
AclWI	GGATC	4 cut(s)	364, 377, 848, 861
AcoI	YGGCCR	3 cut(s)	199, 823, 868
AcuI	CTGAAG	1 cut(s)	813
AdeI	CACNNNGTG	1 cut(s)	617
AfaI	GTAC	3 cut(s)	20, 472, 485
AfiI	CCNNNNNNNGG	4 cut(s)	617, 707, 719, 967
AgsI	TTSAA	1 cut(s)	565
AjiI	CACGTC	1 cut(s)	1029
AjnI	CCWGG	3 cut(s)	350, 706, 848
AluBI	AGCT	2 cut(s)	91, 239
AluI	AGCT	2 cut(s)	91, 239
Alw21I	GWGCWC	2 cut(s)	273, 334
AlwI	GGATC	4 cut(s)	364, 377, 848, 861
Ama87I	CYCGRG	1 cut(s)	738
AoxI	GGCC	4 cut(s)	199, 710, 823, 868
ApaI	GGGCCC	1 cut(s)	714
ApeKI	GCWGC	3 cut(s)	650, 665, 772
AspLEI	GCGC	1 cut(s)	989
AspS9I	GGNCC	4 cut(s)	82, 710, 711, 979
AsuHPI	GGTGA	2 cut(s)	16, 340
AvaI	CYCGRG	1 cut(s)	738
AvaII	GGWCC	2 cut(s)	82, 979
AxyI	CCTNAGG	1 cut(s)	777
BaeGI	GKGCMC	1 cut(s)	714
BalI	TGGCCA	1 cut(s)	870
BamHI	GGATCC	2 cut(s)	369, 853
BanII	GRGCYC	2 cut(s)	679, 714
BauI	CACGAG	1 cut(s)	207
BbsI	GAAGAC	1 cut(s)	909
Bbv12I	GWGCWC	2 cut(s)	273, 334
BbvCI	CCTCAGC	1 cut(s)	240
BbvI	GCAGC	3 cut(s)	662, 677, 759
BceAI	ACGGC	2 cut(s)	186, 810
BciT130I	CCWGG	3 cut(s)	352, 708, 850
BfaI	CTAG	1 cut(s)	657
BfmI	CTRYAG	1 cut(s)	648
BfuAI	ACCTGC	1 cut(s)	343
BglI	GCCNNNNNGGC	2 cut(s)	674, 995
BglII	AGATCT	3 cut(s)	796, 932, 942
BisI	GCNGC	3 cut(s)	651, 666, 773
BlsI	GCNGC	3 cut(s)	652, 667, 774
Bme1390I	CCNGG	3 cut(s)	352, 708, 850
Bme18I	GGWCC	2 cut(s)	82, 979
BmeT110I	CYCGRG	1 cut(s)	738
BmgBI	CACGTC	1 cut(s)	1029
BmgT120I	GGNCC	4 cut(s)	82, 710, 711, 979
BmiI	GGNNCC	4 cut(s)	371, 678, 712, 855
BmrFI	CCNGG	3 cut(s)	352, 708, 850
BmsI	GCATC	2 cut(s)	235, 242
BpiI	GAAGAC	1 cut(s)	909
BplI	GAGNNNNNCTC	2 cut(s)	44, 76
Bpu10I	CCTNAGC	1 cut(s)	240
BpuEI	CTTGAG	1 cut(s)	490
BsaJI	CCNNGG	6 cut(s)	78, 110, 670, 707, 848, 849
Bsc4I	CCNNNNNNNGG	4 cut(s)	617, 707, 719, 967
Bse1I	ACTGG	4 cut(s)	202, 590, 805, 871
Bse21I	CCTNAGG	1 cut(s)	777
BseBI	CCWGG	3 cut(s)	352, 708, 850
BseDI	CCNNGG	6 cut(s)	78, 110, 670, 707, 848, 849
BseGI	GGATG	3 cut(s)	250, 703, 1007
BseLI	CCNNNNNNNGG	4 cut(s)	617, 707, 719, 967
BseMII	CTCAG	2 cut(s)	231, 791
BseNI	ACTGG	4 cut(s)	202, 590, 805, 871
BseSI	GKGCMC	1 cut(s)	714
BseXI	GCAGC	3 cut(s)	662, 677, 759
BsgI	GTGCAG	1 cut(s)	48
BshFI	GGCC	4 cut(s)	201, 712, 825, 870
BsiHKAI	GWGCWC	2 cut(s)	273, 334
BsiHKCI	CYCGRG	1 cut(s)	738
BslI	CCNNNNNNNGG	4 cut(s)	617, 707, 719, 967
BsmI	GAATGC	3 cut(s)	105, 294, 606
BsnI	GGCC	4 cut(s)	201, 712, 825, 870
BsoBI	CYCGRG	1 cut(s)	738
Bsp120I	GGGCCC	1 cut(s)	710
Bsp1286I	GDGCHC	4 cut(s)	273, 334, 679, 714
Bsp143I	GATC	7 cut(s)	369, 519, 796, 853, 916, 932, 942
Bsp19I	CCATGG	2 cut(s)	78, 110
BspACI	CCGC	3 cut(s)	85, 190, 802
BspANI	GGCC	4 cut(s)	201, 712, 825, 870
BspCNI	CTCAG	2 cut(s)	232, 790
BspHI	TCATGA	1 cut(s)	937
BspLI	GGNNCC	4 cut(s)	371, 678, 712, 855
BspMAI	CTGCAG	1 cut(s)	652
BspMI	ACCTGC	1 cut(s)	343
BspPI	GGATC	4 cut(s)	364, 377, 848, 861
BsrBI	CCGCTC	1 cut(s)	190
BsrI	ACTGG	4 cut(s)	202, 590, 805, 871
BssECI	CCNNGG	6 cut(s)	78, 110, 670, 707, 848, 849
BssMI	GATC	7 cut(s)	369, 519, 796, 853, 916, 932, 942
BssSI	CACGAG	1 cut(s)	207
BssT1I	CCWWGG	3 cut(s)	78, 110, 670
Bst2BI	CACGAG	1 cut(s)	207
Bst2UI	CCWGG	3 cut(s)	352, 708, 850
Bst4CI	ACNGT	2 cut(s)	40, 908
Bst6I	CTCTTC	2 cut(s)	315, 718
BstAPI	GCANNNNNTGC	1 cut(s)	635
BstC8I	GCNNGC	2 cut(s)	89, 606
BstDEI	CTNAG	3 cut(s)	240, 516, 777
BstDSI	CCRYGG	2 cut(s)	78, 110
BstF5I	GGATG	3 cut(s)	250, 703, 1007
BstHHI	GCGC	1 cut(s)	989
BstKTI	GATC	7 cut(s)	372, 522, 799, 856, 919, 935, 945
BstMBI	GATC	7 cut(s)	369, 519, 796, 853, 916, 932, 942
BstMWI	GCNNNNNNNGC	5 cut(s)	245, 635, 674, 822, 995
BstNI	CCWGG	3 cut(s)	352, 708, 850
BstNSI	RCATGY	2 cut(s)	445, 502
BstSCI	CCNGG	3 cut(s)	350, 706, 848
BstSFI	CTRYAG	1 cut(s)	648
BstSLI	GKGCMC	1 cut(s)	714
BstV1I	GCAGC	3 cut(s)	662, 677, 759
BstV2I	GAAGAC	1 cut(s)	909
BstX2I	RGATCY	5 cut(s)	369, 796, 853, 932, 942
BstXI	CCANNNNNNTGG	1 cut(s)	812
BstYI	RGATCY	5 cut(s)	369, 796, 853, 932, 942
Bsu36I	CCTNAGG	1 cut(s)	777
BsuRI	GGCC	4 cut(s)	201, 712, 825, 870
BtgI	CCRYGG	2 cut(s)	78, 110
BtrI	CACGTC	1 cut(s)	1029
BtsCI	GGATG	3 cut(s)	250, 703, 1007
BtsIMutI	CAGTG	1 cut(s)	597
BveI	ACCTGC	1 cut(s)	343
Cac8I	GCNNGC	2 cut(s)	89, 606
CciI	TCATGA	1 cut(s)	937
CfoI	GCGC	1 cut(s)	989
Cfr13I	GGNCC	4 cut(s)	82, 710, 711, 979
Csp6I	GTAC	3 cut(s)	19, 471, 484
CviAII	CATG	6 cut(s)	22, 79, 111, 442, 499, 938
CviQI	GTAC	3 cut(s)	19, 471, 484
DdeI	CTNAG	3 cut(s)	240, 516, 777
DpnI	GATC	7 cut(s)	371, 521, 798, 855, 918, 934, 944
DpnII	GATC	7 cut(s)	369, 519, 796, 853, 916, 932, 942
DraI	TTTAAA	1 cut(s)	586
DraIII	CACNNNGTG	1 cut(s)	617
EaeI	YGGCCR	3 cut(s)	199, 823, 868
Eam1104I	CTCTTC	2 cut(s)	315, 718
EarI	CTCTTC	2 cut(s)	315, 718
EciI	GGCGGA	1 cut(s)	791
Eco130I	CCWWGG	3 cut(s)	78, 110, 670
Eco24I	GRGCYC	2 cut(s)	679, 714
Eco47I	GGWCC	2 cut(s)	82, 979
Eco57I	CTGAAG	1 cut(s)	813
Eco81I	CCTNAGG	1 cut(s)	777
Eco88I	CYCGRG	1 cut(s)	738
EcoO109I	RGGNCCY	1 cut(s)	710
EcoRII	CCWGG	3 cut(s)	350, 706, 848
EcoT14I	CCWWGG	3 cut(s)	78, 110, 670
EcoT22I	ATGCAT	1 cut(s)	539
EcoT38I	GRGCYC	2 cut(s)	679, 714
ErhI	CCWWGG	3 cut(s)	78, 110, 670
FaeI	CATG	6 cut(s)	25, 82, 114, 445, 502, 941
FatI	CATG	6 cut(s)	21, 78, 110, 441, 498, 937
FauNDI	CATATG	1 cut(s)	963
Fnu4HI	GCNGC	3 cut(s)	651, 666, 773
FokI	GGATG	3 cut(s)	257, 690, 1014
FriOI	GRGCYC	2 cut(s)	679, 714
Fsp4HI	GCNGC	3 cut(s)	651, 666, 773
FspBI	CTAG	1 cut(s)	657
GlaI	GCGC	1 cut(s)	988
GluI	GCNGC	3 cut(s)	651, 666, 773
HaeIII	GGCC	4 cut(s)	201, 712, 825, 870
HhaI	GCGC	1 cut(s)	989
Hin1II	CATG	6 cut(s)	25, 82, 114, 445, 502, 941
Hin6I	GCGC	1 cut(s)	987
HinP1I	GCGC	1 cut(s)	987
HincII	GTYRAC	1 cut(s)	195
HindII	GTYRAC	1 cut(s)	195
HindIII	AAGCTT	1 cut(s)	89
HinfI	GANTC	1 cut(s)	731
HphI	GGTGA	2 cut(s)	16, 340
Hpy166II	GTNNAC	3 cut(s)	195, 471, 950
Hpy188III	TCNNGA	5 cut(s)	492, 779, 927, 938, 1015
Hpy8I	GTNNAC	3 cut(s)	195, 471, 950
HpyAV	CCTTC	3 cut(s)	178, 442, 762
HpyCH4III	ACNGT	2 cut(s)	40, 908
HpyCH4IV	ACGT	2 cut(s)	227, 1028
HpyF10VI	GCNNNNNNNGC	5 cut(s)	245, 635, 674, 822, 995
HpyF3I	CTNAG	3 cut(s)	240, 516, 777
HpySE526I	ACGT	2 cut(s)	227, 1028
Hsp92II	CATG	6 cut(s)	25, 82, 114, 445, 502, 941
HspAI	GCGC	1 cut(s)	987
Kzo9I	GATC	7 cut(s)	369, 519, 796, 853, 916, 932, 942
LmnI	GCTCC	2 cut(s)	187, 682
Lsp1109I	GCAGC	3 cut(s)	662, 677, 759
LweI	GCATC	2 cut(s)	235, 242
MaeI	CTAG	1 cut(s)	657
MaeII	ACGT	2 cut(s)	227, 1028
MaeIII	GTNAC	4 cut(s)	223, 346, 382, 889
MalI	GATC	7 cut(s)	371, 521, 798, 855, 918, 934, 944
MbiI	CCGCTC	1 cut(s)	190
MboI	GATC	7 cut(s)	369, 519, 796, 853, 916, 932, 942
MboII	GAAGA	6 cut(s)	332, 587, 735, 806, 914, 942
MflI	RGATCY	5 cut(s)	369, 796, 853, 932, 942
MhlI	GDGCHC	4 cut(s)	273, 334, 679, 714
MlsI	TGGCCA	1 cut(s)	870
MluCI	AATT	2 cut(s)	161, 545
MluNI	TGGCCA	1 cut(s)	870
MmeI	TCCRAC	2 cut(s)	704, 745
Mox20I	TGGCCA	1 cut(s)	870
Mph1103I	ATGCAT	1 cut(s)	539
MscI	TGGCCA	1 cut(s)	870
MseI	TTAA	2 cut(s)	300, 585
MslI	CAYNNNNRTG	1 cut(s)	26
Msp20I	TGGCCA	1 cut(s)	870
MspA1I	CMGCKG	1 cut(s)	239
MspR9I	CCNGG	3 cut(s)	352, 708, 850
Mva1269I	GAATGC	3 cut(s)	105, 294, 606
MvaI	CCWGG	3 cut(s)	352, 708, 850
MwoI	GCNNNNNNNGC	5 cut(s)	245, 635, 674, 822, 995
NcoI	CCATGG	2 cut(s)	78, 110
NdeI	CATATG	1 cut(s)	963
NdeII	GATC	7 cut(s)	369, 519, 796, 853, 916, 932, 942
NlaIII	CATG	6 cut(s)	25, 82, 114, 445, 502, 941
NlaIV	GGNNCC	4 cut(s)	371, 678, 712, 855
NmuCI	GTSAC	2 cut(s)	346, 382
NsiI	ATGCAT	1 cut(s)	539
NspI	RCATGY	2 cut(s)	445, 502
PaeR7I	CTCGAG	1 cut(s)	738
PagI	TCATGA	1 cut(s)	937
PaqCI	CACCTGC	1 cut(s)	343
PasI	CCCWGGG	1 cut(s)	849
PcsI	WCGNNNNNNNCGW	1 cut(s)	925
PctI	GAATGC	3 cut(s)	105, 294, 606
PfeI	GAWTC	1 cut(s)	731
PflMI	CCANNNNNTGG	2 cut(s)	617, 967
PkrI	GCNGC	3 cut(s)	652, 667, 774
Psp1406I	AACGTT	1 cut(s)	227
Psp6I	CCWGG	3 cut(s)	350, 706, 848
PspGI	CCWGG	3 cut(s)	350, 706, 848
PspN4I	GGNNCC	4 cut(s)	371, 678, 712, 855
PspOMI	GGGCCC	1 cut(s)	710
PspPI	GGNCC	4 cut(s)	82, 710, 711, 979
PspXI	VCTCGAGB	1 cut(s)	738
PstI	CTGCAG	1 cut(s)	652
PsuI	RGATCY	5 cut(s)	369, 796, 853, 932, 942
PvuII	CAGCTG	1 cut(s)	239
RsaI	GTAC	3 cut(s)	20, 472, 485
RsaNI	GTAC	3 cut(s)	19, 471, 484
RseI	CAYNNNNRTG	1 cut(s)	26
SaqAI	TTAA	2 cut(s)	300, 585
SatI	GCNGC	3 cut(s)	651, 666, 773
Sau3AI	GATC	7 cut(s)	369, 519, 796, 853, 916, 932, 942
Sau96I	GGNCC	4 cut(s)	82, 710, 711, 979
ScrFI	CCNGG	3 cut(s)	352, 708, 850
SduI	GDGCHC	4 cut(s)	273, 334, 679, 714
SetI	ASST	9 cut(s)	70, 93, 230, 241, 337, 406, 453, 562, 1031
SfaNI	GCATC	2 cut(s)	235, 242
SfcI	CTRYAG	1 cut(s)	648
Sfr274I	CTCGAG	1 cut(s)	738
SinI	GGWCC	2 cut(s)	82, 979
SlaI	CTCGAG	1 cut(s)	738
SmiMI	CAYNNNNRTG	1 cut(s)	26
SmlI	CTYRAG	2 cut(s)	505, 738
SmoI	CTYRAG	2 cut(s)	505, 738
Sse9I	AATT	2 cut(s)	161, 545
SsiI	CCGC	3 cut(s)	85, 190, 802
SspMI	CTAG	1 cut(s)	657
StyD4I	CCNGG	3 cut(s)	350, 706, 848
StyI	CCWWGG	3 cut(s)	78, 110, 670
TaaI	ACNGT	2 cut(s)	40, 908
TaiI	ACGT	2 cut(s)	230, 1031
TaqI	TCGA	2 cut(s)	400, 739
TasI	AATT	2 cut(s)	161, 545
TatI	WGTACW	1 cut(s)	470
TfiI	GAWTC	1 cut(s)	731
Tru1I	TTAA	2 cut(s)	300, 585
Tru9I	TTAA	2 cut(s)	300, 585
TscAI	CASTG	1 cut(s)	597
TseFI	GTSAC	2 cut(s)	346, 382
TseI	GCWGC	3 cut(s)	650, 665, 772
Tsp45I	GTSAC	2 cut(s)	346, 382
TspDTI	ATGAA	1 cut(s)	197
TspRI	CASTG	1 cut(s)	597
Van91I	CCANNNNNTGG	2 cut(s)	617, 967
VpaK11BI	GGWCC	2 cut(s)	82, 979
XceI	RCATGY	2 cut(s)	445, 502
XcmI	CCANNNNNNNNNTGG	1 cut(s)	878
XhoI	CTCGAG	1 cut(s)	738
XspI	CTAG	1 cut(s)	657
Zsp2I	ATGCAT	1 cut(s)	539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.