Prupe.7G132900_v2.0.a1

Heterogeneous nuclear ribonucleoprotein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
Physical Location & Seq
Forward (+)
15145661 .. 15150195
4535 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G132900.1

Sequence Viewer

Length: 1092 bp
ATGGACCGCAAGCTCGTGGTTTTGGGCATTCCGTGGGATATTGATACGGAAGGGTTGAGAGAGTATATGAGCAAATTTGGTGAATTGGAAGATTGTATTGTCATGAAGGACCGGTCAACTGGTCGGTCTCGCGGGTTTGGATATGCAACATTTGCATCAGCTGAAGATGCTAAGAATGCAGCATCAAGTGAGCACTTTCTTGGGAATAGAATGCTGGAAGTTAAAATAGCTACGCCAAAGGAGGAGATGAGAGCACCTGCAAGAAAAGTTACCAGGATATTTGTTGCAAGGATCCCACAAGTTGTGACAGAAGCCACCTTCCGAAGTCATTTTGAGAAATATGGTGATATAACAGATTTATACATGCCGAAGGATCAAGGCTCAAAAATGCACCGTGGAATTGGGTTTATAACATTTGAAAATGCAGATTCCGTGGAAAATTTGATGGCTGATACTCATGAGTTAGGCGGTTCCACTGTAGTTGTTGATCGAGCAACTCCCAAGGAAGATGACTTCAGACCAGTTGGCAGAATGGCACAGGGTGGATATGGTGCATATAATGCTTACATCTCAGCAGCAACTAGATATGCGGCACTTGGTGCTCCTACCTTGTATGACCATCCTGGACCAGTACCAGGACCTGCTTTTCCAAGAGGGGAATCTGCTCGAGGACTGGGCAAAAAGATTTTTGTTGGTAGGCTTCCTCAGGAAGCAACCGCGGAAGATCTCCGCCAGTATTTTGGGAGATTTGGTCGTATAGCAGATGTCTATGTTCCAAGGGACCCAAAAAGAACTGGACATAGAGGGTTTGGTTTTGTAACTTTTGGGGAAGATGGTGTATCCGAACGTGTATCACGAAGGTCGCATGAGATTTGTGGACAGCAGGTTGCAATAGATACAGCCACACCGCTTGATGAAGCTGGTACCAGTGGAAATTTTGTGATGAATAATGTAGAGCCCTTTGGTGGCGGCTATGGTGGTCCTGTGCGCAGCTATGGCAGGATGTATGGAAGTCTAGATTTTGATGATTGGGGTTATGGAATCGGCAGTGCGAGACCATCAAGAGCAGATTGGAGGTACAGGCCATACTAG

Protein Analysis

364

Amino Acids

40.14

Weight (kDa)

7.07

Isoelectric Point (pI)

37.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 410
AarI CACCTGC 1 cut(s) 265
Acc16I TGCGCA 1 cut(s) 989
Acc36I ACCTGC 3 cut(s) 265, 649, 874
Acc65I GGTACC 1 cut(s) 923
AccB1I GGYRCC 1 cut(s) 923
AccII CGCG 2 cut(s) 132, 719
AciI CCGC 9 cut(s) 7, 132, 468, 590, 717, 719, 730, 908, 969
AclWI GGATC 3 cut(s) 286, 299, 381
AcsI RAATTY 3 cut(s) 74, 439, 934
AcuI CTGAAG 2 cut(s) 183, 499
AdeI CACNNNGTG 2 cut(s) 542, 599
AfaI GTAC 3 cut(s) 633, 925, 1079
AfiI CCNNNNNNNGG 2 cut(s) 635, 965
AflIII ACRYGT 1 cut(s) 847
AgeI ACCGGT 1 cut(s) 111
AgsI TTSAA 1 cut(s) 419
AjnI CCWGG 3 cut(s) 272, 622, 634
AluBI AGCT 5 cut(s) 13, 161, 230, 920, 993
AluI AGCT 5 cut(s) 13, 161, 230, 920, 993
Alw21I GWGCWC 3 cut(s) 195, 256, 604
Alw26I GTCTC 2 cut(s) 132, 1048
AlwI GGATC 3 cut(s) 286, 299, 381
AlwNI CAGNNNCTG 1 cut(s) 641
Ama87I CYCGRG 1 cut(s) 666
AoxI GGCC 1 cut(s) 1082
ApeKI GCWGC 3 cut(s) 179, 575, 990
ApoI RAATTY 3 cut(s) 74, 439, 934
AsiGI ACCGGT 1 cut(s) 111
Asp718I GGTACC 1 cut(s) 923
AspLEI GCGC 1 cut(s) 990
AspS9I GGNCC 6 cut(s) 4, 109, 626, 638, 781, 980
AsuHPI GGTGA 2 cut(s) 92, 356
AvaI CYCGRG 1 cut(s) 666
AvaII GGWCC 6 cut(s) 4, 109, 626, 638, 781, 980
AxyI CCTNAGG 1 cut(s) 705
BamHI GGATCC 1 cut(s) 291
BanI GGYRCC 1 cut(s) 923
BanII GRGCYC 1 cut(s) 960
BauI CACGAG 1 cut(s) 14
Bbv12I GWGCWC 3 cut(s) 195, 256, 604
BbvI GCAGC 3 cut(s) 191, 587, 1002
BccI CCATC 4 cut(s) 439, 627, 827, 1066
BciT130I CCWGG 3 cut(s) 274, 624, 636
BciVI GTATCC 1 cut(s) 850
BcoDI GTCTC 2 cut(s) 132, 1048
BfaI CTAG 3 cut(s) 582, 1016, 1090
BfmI CTRYAG 1 cut(s) 477
BfuAI ACCTGC 3 cut(s) 265, 649, 874
BfuI GTATCC 1 cut(s) 850
BglII AGATCT 1 cut(s) 724
BisI GCNGC 5 cut(s) 180, 576, 591, 970, 991
BlsI GCNGC 5 cut(s) 181, 577, 592, 971, 992
Bme1390I CCNGG 3 cut(s) 274, 624, 636
Bme18I GGWCC 6 cut(s) 4, 109, 626, 638, 781, 980
BmeT110I CYCGRG 1 cut(s) 666
BmgT120I GGNCC 6 cut(s) 4, 109, 626, 638, 781, 980
BmiI GGNNCC 5 cut(s) 293, 472, 782, 783, 925
BmrFI CCNGG 3 cut(s) 274, 624, 636
BmrI ACTGGG 1 cut(s) 683
BmsI GCATC 3 cut(s) 157, 164, 191
BmuI ACTGGG 1 cut(s) 683
BsaI GGTCTC 2 cut(s) 132, 1048
BsaJI CCNNGG 6 cut(s) 32, 394, 432, 501, 717, 776
BsaWI WCCGGW 1 cut(s) 111
BsaXI ACNNNNNCTCC 2 cut(s) 736, 766
Bsc4I CCNNNNNNNGG 2 cut(s) 635, 965
Bse118I RCCGGY 1 cut(s) 111
Bse1I ACTGG 7 cut(s) 124, 521, 629, 678, 733, 799, 927
Bse21I CCTNAGG 1 cut(s) 705
BseBI CCWGG 3 cut(s) 274, 624, 636
BseDI CCNNGG 6 cut(s) 32, 394, 432, 501, 717, 776
BseGI GGATG 2 cut(s) 619, 1008
BseLI CCNNNNNNNGG 2 cut(s) 635, 965
BseMII CTCAG 2 cut(s) 585, 719
BseNI ACTGG 7 cut(s) 124, 521, 629, 678, 733, 799, 927
BseRI GAGGAG 1 cut(s) 257
BseXI GCAGC 3 cut(s) 191, 587, 1002
Bsh1236I CGCG 2 cut(s) 132, 719
BshFI GGCC 1 cut(s) 1084
BshNI GGYRCC 1 cut(s) 923
BshTI ACCGGT 1 cut(s) 111
BsiHKAI GWGCWC 3 cut(s) 195, 256, 604
BsiHKCI CYCGRG 1 cut(s) 666
BsiSI CCGG 1 cut(s) 112
BslFI GGGAC 1 cut(s) 794
BslI CCNNNNNNNGG 2 cut(s) 635, 965
BsmAI GTCTC 2 cut(s) 132, 1048
BsmFI GGGAC 1 cut(s) 794
BsmI GAATGC 3 cut(s) 27, 181, 216
BsnI GGCC 1 cut(s) 1084
Bso31I GGTCTC 2 cut(s) 132, 1048
BsoBI CYCGRG 1 cut(s) 666
Bsp1286I GDGCHC 4 cut(s) 195, 256, 604, 960
Bsp143I GATC 4 cut(s) 291, 373, 487, 724
BspACI CCGC 9 cut(s) 7, 132, 468, 590, 717, 719, 730, 908, 969
BspANI GGCC 1 cut(s) 1084
BspCNI CTCAG 2 cut(s) 584, 718
BspFNI CGCG 2 cut(s) 132, 719
BspHI TCATGA 2 cut(s) 102, 457
BspLI GGNNCC 5 cut(s) 293, 472, 782, 783, 925
BspMI ACCTGC 3 cut(s) 265, 649, 874
BspPI GGATC 3 cut(s) 286, 299, 381
BspT107I GGYRCC 1 cut(s) 923
BspTNI GGTCTC 2 cut(s) 132, 1048
BsrFI RCCGGY 1 cut(s) 111
BsrI ACTGG 7 cut(s) 124, 521, 629, 678, 733, 799, 927
BssAI RCCGGY 1 cut(s) 111
BssECI CCNNGG 6 cut(s) 32, 394, 432, 501, 717, 776
BssMI GATC 4 cut(s) 291, 373, 487, 724
BssSI CACGAG 1 cut(s) 14
BssT1I CCWWGG 2 cut(s) 501, 776
Bst2BI CACGAG 1 cut(s) 14
Bst2UI CCWGG 3 cut(s) 274, 624, 636
Bst4CI ACNGT 2 cut(s) 395, 478
BstAPI GCANNNNNTGC 3 cut(s) 152, 560, 599
BstC8I GCNNGC 1 cut(s) 11
BstDEI CTNAG 3 cut(s) 171, 571, 705
BstDSI CCRYGG 4 cut(s) 32, 394, 432, 717
BstF5I GGATG 2 cut(s) 619, 1008
BstFNI CGCG 2 cut(s) 132, 719
BstHHI GCGC 1 cut(s) 990
BstKTI GATC 4 cut(s) 294, 376, 490, 727
BstMAI GTCTC 2 cut(s) 132, 1048
BstMBI GATC 4 cut(s) 291, 373, 487, 724
BstMWI GCNNNNNNNGC 6 cut(s) 152, 167, 176, 560, 599, 996
BstNI CCWGG 3 cut(s) 274, 624, 636
BstNSI RCATGY 1 cut(s) 367
BstSCI CCNGG 3 cut(s) 272, 622, 634
BstSFI CTRYAG 1 cut(s) 477
BstUI CGCG 2 cut(s) 132, 719
BstV1I GCAGC 3 cut(s) 191, 587, 1002
BstX2I RGATCY 2 cut(s) 291, 724
BstXI CCANNNNNNTGG 1 cut(s) 740
BstYI RGATCY 2 cut(s) 291, 724
Bsu36I CCTNAGG 1 cut(s) 705
BsuI GTATCC 1 cut(s) 850
BsuRI GGCC 1 cut(s) 1084
BtgI CCRYGG 4 cut(s) 32, 394, 432, 717
BtsCI GGATG 2 cut(s) 619, 1008
BtsI GCAGTG 1 cut(s) 1054
BtsIMutI CAGTG 3 cut(s) 474, 934, 1054
BveI ACCTGC 3 cut(s) 265, 649, 874
Cac8I GCNNGC 1 cut(s) 11
CaiI CAGNNNCTG 1 cut(s) 641
CciI TCATGA 2 cut(s) 102, 457
CfoI GCGC 1 cut(s) 990
Cfr10I RCCGGY 1 cut(s) 111
Cfr13I GGNCC 6 cut(s) 4, 109, 626, 638, 781, 980
Cfr42I CCGCGG 1 cut(s) 720
Csp6I GTAC 3 cut(s) 632, 924, 1078
CspAI ACCGGT 1 cut(s) 111
CspCI CAANNNNNGTGG 4 cut(s) 463, 498, 892, 927
CviAII CATG 4 cut(s) 103, 364, 458, 866
CviQI GTAC 3 cut(s) 632, 924, 1078
DdeI CTNAG 3 cut(s) 171, 571, 705
DpnI GATC 4 cut(s) 293, 375, 489, 726
DpnII GATC 4 cut(s) 291, 373, 487, 724
DraIII CACNNNGTG 2 cut(s) 542, 599
EciI GGCGGA 1 cut(s) 719
Eco130I CCWWGG 2 cut(s) 501, 776
Eco24I GRGCYC 1 cut(s) 960
Eco31I GGTCTC 2 cut(s) 132, 1048
Eco47I GGWCC 6 cut(s) 4, 109, 626, 638, 781, 980
Eco57I CTGAAG 2 cut(s) 183, 499
Eco81I CCTNAGG 1 cut(s) 705
Eco88I CYCGRG 1 cut(s) 666
EcoO109I RGGNCCY 2 cut(s) 638, 781
EcoRII CCWGG 3 cut(s) 272, 622, 634
EcoT14I CCWWGG 2 cut(s) 501, 776
EcoT38I GRGCYC 1 cut(s) 960
ErhI CCWWGG 2 cut(s) 501, 776
FaeI CATG 4 cut(s) 106, 367, 461, 869
FaqI GGGAC 1 cut(s) 794
FatI CATG 4 cut(s) 102, 363, 457, 865
FauI CCCGC 1 cut(s) 125
Fnu4HI GCNGC 5 cut(s) 180, 576, 591, 970, 991
FokI GGATG 2 cut(s) 606, 1015
FriOI GRGCYC 1 cut(s) 960
Fsp4HI GCNGC 5 cut(s) 180, 576, 591, 970, 991
FspBI CTAG 3 cut(s) 582, 1016, 1090
FspI TGCGCA 1 cut(s) 989
GlaI GCGC 1 cut(s) 989
GluI GCNGC 5 cut(s) 180, 576, 591, 970, 991
HaeIII GGCC 1 cut(s) 1084
HapII CCGG 1 cut(s) 112
HhaI GCGC 1 cut(s) 990
Hin1II CATG 4 cut(s) 106, 367, 461, 869
Hin6I GCGC 1 cut(s) 988
HinP1I GCGC 1 cut(s) 988
HincII GTYRAC 1 cut(s) 117
HindII GTYRAC 1 cut(s) 117
HinfI GANTC 3 cut(s) 428, 659, 1041
HpaII CCGG 1 cut(s) 112
HphI GGTGA 2 cut(s) 92, 356
Hpy166II GTNNAC 2 cut(s) 117, 878
Hpy188I TCNGA 3 cut(s) 323, 518, 844
Hpy188III TCNNGA 6 cut(s) 103, 458, 707, 855, 1016, 1062
Hpy8I GTNNAC 2 cut(s) 117, 878
HpyAV CCTTC 5 cut(s) 44, 100, 328, 364, 852
HpyCH4III ACNGT 2 cut(s) 395, 478
HpyCH4IV ACGT 1 cut(s) 847
HpyCH4V TGCA 9 cut(s) 146, 155, 179, 260, 287, 391, 425, 554, 890
HpyF10VI GCNNNNNNNGC 6 cut(s) 152, 167, 176, 560, 599, 996
HpyF3I CTNAG 3 cut(s) 171, 571, 705
HpySE526I ACGT 1 cut(s) 847
Hsp92II CATG 4 cut(s) 106, 367, 461, 869
HspAI GCGC 1 cut(s) 988
KflI GGGWCCC 1 cut(s) 781
KpnI GGTACC 1 cut(s) 927
KspI CCGCGG 1 cut(s) 720
Kzo9I GATC 4 cut(s) 291, 373, 487, 724
LmnI GCTCC 1 cut(s) 607
Lsp1109I GCAGC 3 cut(s) 191, 587, 1002
LweI GCATC 3 cut(s) 157, 164, 191
MaeI CTAG 3 cut(s) 582, 1016, 1090
MaeII ACGT 1 cut(s) 847
MaeIII GTNAC 3 cut(s) 268, 304, 817
MalI GATC 4 cut(s) 293, 375, 489, 726
MboI GATC 4 cut(s) 291, 373, 487, 724
MboII GAAGA 5 cut(s) 101, 176, 518, 734, 842
MflI RGATCY 2 cut(s) 291, 724
MhlI GDGCHC 4 cut(s) 195, 256, 604, 960
MluCI AATT 5 cut(s) 74, 83, 399, 439, 934
MnlI CCTC 6 cut(s) 235, 647, 662, 714, 797, 1068
MseI TTAA 1 cut(s) 222
MspA1I CMGCKG 2 cut(s) 161, 719
MspI CCGG 1 cut(s) 112
MspR9I CCNGG 3 cut(s) 274, 624, 636
Mva1269I GAATGC 3 cut(s) 27, 181, 216
MvaI CCWGG 3 cut(s) 274, 624, 636
MvnI CGCG 2 cut(s) 132, 719
MwoI GCNNNNNNNGC 6 cut(s) 152, 167, 176, 560, 599, 996
NdeII GATC 4 cut(s) 291, 373, 487, 724
NlaIII CATG 4 cut(s) 106, 367, 461, 869
NlaIV GGNNCC 5 cut(s) 293, 472, 782, 783, 925
NmuCI GTSAC 1 cut(s) 304
NsbI TGCGCA 1 cut(s) 989
NspI RCATGY 1 cut(s) 367
PaeR7I CTCGAG 1 cut(s) 666
PagI TCATGA 2 cut(s) 102, 457
PaqCI CACCTGC 1 cut(s) 265
PcsI WCGNNNNNNNCGW 1 cut(s) 853
PctI GAATGC 3 cut(s) 27, 181, 216
PfeI GAWTC 3 cut(s) 428, 659, 1041
PfoI TCCNGGA 1 cut(s) 622
PinAI ACCGGT 1 cut(s) 111
PkrI GCNGC 5 cut(s) 181, 577, 592, 971, 992
PpuMI RGGWCCY 2 cut(s) 638, 781
PsiI TTATAA 1 cut(s) 410
Psp5II RGGWCCY 2 cut(s) 638, 781
Psp6I CCWGG 3 cut(s) 272, 622, 634
PspGI CCWGG 3 cut(s) 272, 622, 634
PspN4I GGNNCC 5 cut(s) 293, 472, 782, 783, 925
PspPI GGNCC 6 cut(s) 4, 109, 626, 638, 781, 980
PspPPI RGGWCCY 2 cut(s) 638, 781
PspXI VCTCGAGB 1 cut(s) 666
PstNI CAGNNNCTG 1 cut(s) 641
PsuI RGATCY 2 cut(s) 291, 724
PvuII CAGCTG 1 cut(s) 161
RsaI GTAC 3 cut(s) 633, 925, 1079
RsaNI GTAC 3 cut(s) 632, 924, 1078
SacII CCGCGG 1 cut(s) 720
SaqAI TTAA 1 cut(s) 222
SatI GCNGC 5 cut(s) 180, 576, 591, 970, 991
Sau3AI GATC 4 cut(s) 291, 373, 487, 724
Sau96I GGNCC 6 cut(s) 4, 109, 626, 638, 781, 980
ScrFI CCNGG 3 cut(s) 274, 624, 636
SduI GDGCHC 4 cut(s) 195, 256, 604, 960
SfaNI GCATC 3 cut(s) 157, 164, 191
SfcI CTRYAG 1 cut(s) 477
Sfr274I CTCGAG 1 cut(s) 666
Sfr303I CCGCGG 1 cut(s) 720
SgrBI CCGCGG 1 cut(s) 720
SinI GGWCC 6 cut(s) 4, 109, 626, 638, 781, 980
SlaI CTCGAG 1 cut(s) 666
SmlI CTYRAG 1 cut(s) 666
SmoI CTYRAG 1 cut(s) 666
Sse9I AATT 5 cut(s) 74, 83, 399, 439, 934
SsiI CCGC 9 cut(s) 7, 132, 468, 590, 717, 719, 730, 908, 969
SspMI CTAG 3 cut(s) 582, 1016, 1090
StyD4I CCNGG 3 cut(s) 272, 622, 634
StyI CCWWGG 2 cut(s) 501, 776
TaaI ACNGT 2 cut(s) 395, 478
TaiI ACGT 1 cut(s) 850
TaqI TCGA 2 cut(s) 490, 667
TaqII GACCGA 1 cut(s) 114
TasI AATT 5 cut(s) 74, 83, 399, 439, 934
TauI GCSGC 2 cut(s) 593, 972
TfiI GAWTC 3 cut(s) 428, 659, 1041
Tru1I TTAA 1 cut(s) 222
Tru9I TTAA 1 cut(s) 222
TscAI CASTG 3 cut(s) 481, 934, 1054
TseFI GTSAC 1 cut(s) 304
TseI GCWGC 3 cut(s) 179, 575, 990
Tsp45I GTSAC 1 cut(s) 304
TspDTI ATGAA 3 cut(s) 119, 930, 959
TspGWI ACGGA 3 cut(s) 21, 62, 421
TspRI CASTG 3 cut(s) 481, 934, 1054
VpaK11BI GGWCC 6 cut(s) 4, 109, 626, 638, 781, 980
XapI RAATTY 3 cut(s) 74, 439, 934
XbaI TCTAGA 1 cut(s) 1015
XceI RCATGY 1 cut(s) 367
XhoI CTCGAG 1 cut(s) 666
XspI CTAG 3 cut(s) 582, 1016, 1090
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.