Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0003388

Physical Location & Seq

Genomic Coordinates Reverse (-)

10522117 .. 10524751

Gene Structure 2635 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g13910.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGACCGTAAGCTCGTGGTTTTGGGCATTCCGTGGGATATCGATACGGAAGGGCTGAGAGAGTATATGGTCAAATTTGGGGAATTGGAGGATTGCATTGTCATGAAGGATCGGTCAACTGGTCGGTCTCGTGGATTTGGATATGCAACATTTGTATCTGCTGAAGATGCGAAGAATGCAGCATCAAGCGAGCACTTTCTTGGCAATCGAATGCTGGAAGTTAAAATAGCTACTCCAAAGGAGGAGATGAGAGCACCTGCAAGAAAAGTTACCAGGATATTTGTTGCAAGGATCCCACAATCTGTGACAGAAGCAAACTTTAGAAGTCATTTTGAGAAATATGGTGAAATAATGGATTTATACATGCCAAAGGATCAAGGCTCAAAAGCACATCGTGGAATTGGGTTTATAACATTTGAAAATGCAGATTCCGTGGAAACTTTGATGGTTGATACTCATGAATTAGGCGGTTCCAATGTAGTTGTTGATCGAGCTACACCCAAGGAAGAAGACTTCAGACCAGTTGGAAGAATGGCACAACAGGGTGGCTATGGTGCATATAATGCTTACATCTCAGCAGCAACTAGATATGCGGCCCTCGGGGCTCCTACTTTGTATGACCATCCTGTACCTGGACCAGCTTTTCCAAGAGGGGAATCTTCTCGAGGACTAGGCAAAAAGATCTTTGTTGGCAGGCTTCCTCAGGAAGCAACCTCTGATCGATCTCCGCCAGTATTTTGGGAGATTTGGTCGTATAGTAGATGTCTATGTTCCAAGGGACCCCAAAAGAACTGGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005849 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

RRM_1

Protein Analysis

267

Amino Acids

29.68

Weight (kDa)

8.34

Isoelectric Point (pI)

39.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003388)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36960 AT4G36960
fragaria_vesca	FvH4_1g16100 FvH4_1g16100 FvH4_1g16100 FvH4_1g16100 FvH4_1g16100 FvH4_1g16100 FvH4_1g16100
malus_domestica	MD02G1172600.v1.1 MD15G1284600.v1.1
prunus_persica	Prupe.7G132900_v2.0.a1
pyrus_communis	pycom02g13910 pycom15g24730
rosa_chinensis	RchiOBHm_Chr2g0105721
rosa_laevigata	RLG00000017453
rosa_multiflora	Rmu_sc0000594.1_g000060 Rmu_sc0001051.1_g000061 Rmu_sc0039055.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002090 Rroxscaffold_1G00038100 Rroxscaffold_2G00137950 Rroxscaffold_5G00348070
rosa_rugosa	Rorug01G0167000 Rorug02G0129800 Rorug02G0283100
rosa_samantha	Rh2AG181200 Rh2BG190300 Rh2CG185400 Rh5BG197900 Rh5BG450300 Rh5CG472700 Rh5DG291600 Rh5DG464000 Rh6AG247300
rosa_wichuraiana	Rw2G014170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	410
AarI	CACCTGC	1 cut(s)	265
Acc36I	ACCTGC	1 cut(s)	265
AciI	CCGC	3 cut(s)	468, 593, 728
AclWI	GGATC	4 cut(s)	117, 286, 299, 381
AcsI	RAATTY	1 cut(s)	74
AcuI	CTGAAG	2 cut(s)	183, 499
AdeI	CACNNNGTG	1 cut(s)	395
AfaI	GTAC	1 cut(s)	630
AfiI	CCNNNNNNNGG	1 cut(s)	632
AgsI	TTSAA	1 cut(s)	419
AjnI	CCWGG	2 cut(s)	272, 631
AluBI	AGCT	4 cut(s)	13, 230, 494, 641
AluI	AGCT	4 cut(s)	13, 230, 494, 641
Alw21I	GWGCWC	2 cut(s)	195, 256
Alw26I	GTCTC	1 cut(s)	132
AlwI	GGATC	4 cut(s)	117, 286, 299, 381
Ama87I	CYCGRG	2 cut(s)	599, 663
AoxI	GGCC	1 cut(s)	594
ApeKI	GCWGC	2 cut(s)	179, 578
ApoI	RAATTY	1 cut(s)	74
AspS9I	GGNCC	4 cut(s)	4, 595, 635, 779
AsuHPI	GGTGA	1 cut(s)	356
AvaI	CYCGRG	2 cut(s)	599, 663
AvaII	GGWCC	3 cut(s)	4, 635, 779
AxyI	CCTNAGG	1 cut(s)	702
BaeI	ACNNNNGTAYC	2 cut(s)	138, 171
BamHI	GGATCC	1 cut(s)	291
BanII	GRGCYC	1 cut(s)	607
BauI	CACGAG	2 cut(s)	14, 129
BbsI	GAAGAC	1 cut(s)	516
Bbv12I	GWGCWC	2 cut(s)	195, 256
BbvI	GCAGC	2 cut(s)	191, 590
BccI	CCATC	2 cut(s)	439, 630
BciT130I	CCWGG	2 cut(s)	274, 633
BcoDI	GTCTC	1 cut(s)	132
BfaI	CTAG	2 cut(s)	585, 671
BfuAI	ACCTGC	1 cut(s)	265
BglI	GCCNNNNNGGC	1 cut(s)	602
BglII	AGATCT	1 cut(s)	681
BisI	GCNGC	3 cut(s)	180, 579, 594
BlsI	GCNGC	3 cut(s)	181, 580, 595
Bme1390I	CCNGG	2 cut(s)	274, 633
Bme18I	GGWCC	3 cut(s)	4, 635, 779
BmeT110I	CYCGRG	2 cut(s)	599, 663
BmgT120I	GGNCC	4 cut(s)	4, 595, 635, 779
BmiI	GGNNCC	5 cut(s)	293, 472, 606, 780, 781
BmrFI	CCNGG	2 cut(s)	274, 633
BmsI	GCATC	2 cut(s)	157, 191
BpiI	GAAGAC	1 cut(s)	516
Bsa29I	ATCGAT	2 cut(s)	42, 721
BsaI	GGTCTC	1 cut(s)	132
BsaJI	CCNNGG	5 cut(s)	32, 432, 501, 598, 774
BsaXI	ACNNNNNCTCC	2 cut(s)	734, 764
Bsc4I	CCNNNNNNNGG	1 cut(s)	632
Bse1I	ACTGG	4 cut(s)	124, 521, 731, 797
Bse21I	CCTNAGG	1 cut(s)	702
BseBI	CCWGG	2 cut(s)	274, 633
BseCI	ATCGAT	2 cut(s)	42, 721
BseDI	CCNNGG	5 cut(s)	32, 432, 501, 598, 774
BseGI	GGATG	1 cut(s)	622
BseLI	CCNNNNNNNGG	1 cut(s)	632
BseMII	CTCAG	3 cut(s)	47, 588, 716
BseNI	ACTGG	4 cut(s)	124, 521, 731, 797
BseRI	GAGGAG	1 cut(s)	257
BseXI	GCAGC	2 cut(s)	191, 590
BshFI	GGCC	1 cut(s)	596
BshVI	ATCGAT	2 cut(s)	42, 721
BsiHKAI	GWGCWC	2 cut(s)	195, 256
BsiHKCI	CYCGRG	2 cut(s)	599, 663
BslFI	GGGAC	1 cut(s)	792
BslI	CCNNNNNNNGG	1 cut(s)	632
BsmAI	GTCTC	1 cut(s)	132
BsmFI	GGGAC	1 cut(s)	792
BsmI	GAATGC	3 cut(s)	27, 181, 216
BsnI	GGCC	1 cut(s)	596
Bso31I	GGTCTC	1 cut(s)	132
BsoBI	CYCGRG	2 cut(s)	599, 663
Bsp1286I	GDGCHC	3 cut(s)	195, 256, 607
Bsp143I	GATC	7 cut(s)	109, 291, 373, 487, 681, 718, 722
BspACI	CCGC	3 cut(s)	468, 593, 728
BspANI	GGCC	1 cut(s)	596
BspCNI	CTCAG	3 cut(s)	48, 587, 715
BspDI	ATCGAT	2 cut(s)	42, 721
BspHI	TCATGA	2 cut(s)	102, 457
BspLI	GGNNCC	5 cut(s)	293, 472, 606, 780, 781
BspMI	ACCTGC	1 cut(s)	265
BspPI	GGATC	4 cut(s)	117, 286, 299, 381
BspTNI	GGTCTC	1 cut(s)	132
BsrI	ACTGG	4 cut(s)	124, 521, 731, 797
BssECI	CCNNGG	5 cut(s)	32, 432, 501, 598, 774
BssMI	GATC	7 cut(s)	109, 291, 373, 487, 681, 718, 722
BssSI	CACGAG	2 cut(s)	14, 129
BssT1I	CCWWGG	2 cut(s)	501, 774
Bst2BI	CACGAG	2 cut(s)	14, 129
Bst2UI	CCWGG	2 cut(s)	274, 633
Bst4CI	ACNGT	1 cut(s)	8
BstAPI	GCANNNNNTGC	1 cut(s)	563
BstC8I	GCNNGC	2 cut(s)	191, 695
BstDEI	CTNAG	3 cut(s)	56, 574, 702
BstDSI	CCRYGG	2 cut(s)	32, 432
BstF5I	GGATG	1 cut(s)	622
BstKTI	GATC	7 cut(s)	112, 294, 376, 490, 684, 721, 725
BstMAI	GTCTC	1 cut(s)	132
BstMBI	GATC	7 cut(s)	109, 291, 373, 487, 681, 718, 722
BstMWI	GCNNNNNNNGC	4 cut(s)	167, 176, 563, 602
BstNI	CCWGG	2 cut(s)	274, 633
BstNSI	RCATGY	1 cut(s)	367
BstSCI	CCNGG	2 cut(s)	272, 631
BstV1I	GCAGC	2 cut(s)	191, 590
BstV2I	GAAGAC	1 cut(s)	516
BstX2I	RGATCY	2 cut(s)	291, 681
BstXI	CCANNNNNNTGG	1 cut(s)	738
BstYI	RGATCY	2 cut(s)	291, 681
Bsu15I	ATCGAT	2 cut(s)	42, 721
Bsu36I	CCTNAGG	1 cut(s)	702
BsuRI	GGCC	1 cut(s)	596
BsuTUI	ATCGAT	2 cut(s)	42, 721
BtgI	CCRYGG	2 cut(s)	32, 432
BtsCI	GGATG	1 cut(s)	622
BveI	ACCTGC	1 cut(s)	265
Cac8I	GCNNGC	2 cut(s)	191, 695
CciI	TCATGA	2 cut(s)	102, 457
Cfr13I	GGNCC	4 cut(s)	4, 595, 635, 779
ClaI	ATCGAT	2 cut(s)	42, 721
Csp6I	GTAC	1 cut(s)	629
CviAII	CATG	3 cut(s)	103, 364, 458
CviQI	GTAC	1 cut(s)	629
DdeI	CTNAG	3 cut(s)	56, 574, 702
DpnI	GATC	7 cut(s)	111, 293, 375, 489, 683, 720, 724
DpnII	GATC	7 cut(s)	109, 291, 373, 487, 681, 718, 722
DraIII	CACNNNGTG	1 cut(s)	395
EciI	GGCGGA	1 cut(s)	717
Eco130I	CCWWGG	2 cut(s)	501, 774
Eco24I	GRGCYC	1 cut(s)	607
Eco31I	GGTCTC	1 cut(s)	132
Eco32I	GATATC	1 cut(s)	40
Eco47I	GGWCC	3 cut(s)	4, 635, 779
Eco57I	CTGAAG	2 cut(s)	183, 499
Eco81I	CCTNAGG	1 cut(s)	702
Eco88I	CYCGRG	2 cut(s)	599, 663
EcoO109I	RGGNCCY	1 cut(s)	779
EcoRII	CCWGG	2 cut(s)	272, 631
EcoRV	GATATC	1 cut(s)	40
EcoT14I	CCWWGG	2 cut(s)	501, 774
EcoT38I	GRGCYC	1 cut(s)	607
ErhI	CCWWGG	2 cut(s)	501, 774
FaeI	CATG	3 cut(s)	106, 367, 461
FaqI	GGGAC	1 cut(s)	792
FatI	CATG	3 cut(s)	102, 363, 457
Fnu4HI	GCNGC	3 cut(s)	180, 579, 594
FokI	GGATG	1 cut(s)	609
FriOI	GRGCYC	1 cut(s)	607
Fsp4HI	GCNGC	3 cut(s)	180, 579, 594
FspBI	CTAG	2 cut(s)	585, 671
GluI	GCNGC	3 cut(s)	180, 579, 594
HaeIII	GGCC	1 cut(s)	596
Hin1II	CATG	3 cut(s)	106, 367, 461
HincII	GTYRAC	1 cut(s)	117
HindII	GTYRAC	1 cut(s)	117
HinfI	GANTC	2 cut(s)	428, 656
HphI	GGTGA	1 cut(s)	356
Hpy166II	GTNNAC	1 cut(s)	117
Hpy188I	TCNGA	2 cut(s)	518, 718
Hpy188III	TCNNGA	4 cut(s)	103, 458, 663, 704
Hpy8I	GTNNAC	1 cut(s)	117
HpyAV	CCTTC	2 cut(s)	44, 100
HpyCH4III	ACNGT	1 cut(s)	8
HpyCH4V	TGCA	7 cut(s)	96, 146, 179, 260, 287, 425, 557
HpyF10VI	GCNNNNNNNGC	4 cut(s)	167, 176, 563, 602
HpyF3I	CTNAG	3 cut(s)	56, 574, 702
Hsp92II	CATG	3 cut(s)	106, 367, 461
KflI	GGGWCCC	1 cut(s)	779
Kzo9I	GATC	7 cut(s)	109, 291, 373, 487, 681, 718, 722
LmnI	GCTCC	1 cut(s)	610
Lsp1109I	GCAGC	2 cut(s)	191, 590
LweI	GCATC	2 cut(s)	157, 191
MaeI	CTAG	2 cut(s)	585, 671
MaeIII	GTNAC	2 cut(s)	268, 304
MalI	GATC	7 cut(s)	111, 293, 375, 489, 683, 720, 724
MboI	GATC	7 cut(s)	109, 291, 373, 487, 681, 718, 722
MboII	GAAGA	6 cut(s)	176, 184, 518, 521, 540, 651
MflI	RGATCY	2 cut(s)	291, 681
MhlI	GDGCHC	3 cut(s)	195, 256, 607
MluCI	AATT	4 cut(s)	74, 83, 399, 461
MmeI	TCCRAC	1 cut(s)	505
MnlI	CCTC	7 cut(s)	82, 235, 608, 644, 659, 711, 724
MseI	TTAA	1 cut(s)	222
MslI	CAYNNNNRTG	1 cut(s)	101
MspR9I	CCNGG	2 cut(s)	274, 633
Mva1269I	GAATGC	3 cut(s)	27, 181, 216
MvaI	CCWGG	2 cut(s)	274, 633
MwoI	GCNNNNNNNGC	4 cut(s)	167, 176, 563, 602
NdeII	GATC	7 cut(s)	109, 291, 373, 487, 681, 718, 722
NlaIII	CATG	3 cut(s)	106, 367, 461
NlaIV	GGNNCC	5 cut(s)	293, 472, 606, 780, 781
NmuCI	GTSAC	1 cut(s)	304
NspI	RCATGY	1 cut(s)	367
PaeR7I	CTCGAG	1 cut(s)	663
PagI	TCATGA	2 cut(s)	102, 457
PaqCI	CACCTGC	1 cut(s)	265
PctI	GAATGC	3 cut(s)	27, 181, 216
PfeI	GAWTC	2 cut(s)	428, 656
PkrI	GCNGC	3 cut(s)	181, 580, 595
PpuMI	RGGWCCY	1 cut(s)	779
PsiI	TTATAA	1 cut(s)	410
Psp5II	RGGWCCY	1 cut(s)	779
Psp6I	CCWGG	2 cut(s)	272, 631
PspGI	CCWGG	2 cut(s)	272, 631
PspN4I	GGNNCC	5 cut(s)	293, 472, 606, 780, 781
PspPI	GGNCC	4 cut(s)	4, 595, 635, 779
PspPPI	RGGWCCY	1 cut(s)	779
PsuI	RGATCY	2 cut(s)	291, 681
RsaI	GTAC	1 cut(s)	630
RsaNI	GTAC	1 cut(s)	629
RseI	CAYNNNNRTG	1 cut(s)	101
SaqAI	TTAA	1 cut(s)	222
SatI	GCNGC	3 cut(s)	180, 579, 594
Sau3AI	GATC	7 cut(s)	109, 291, 373, 487, 681, 718, 722
Sau96I	GGNCC	4 cut(s)	4, 595, 635, 779
ScrFI	CCNGG	2 cut(s)	274, 633
SduI	GDGCHC	3 cut(s)	195, 256, 607
SetI	ASST	7 cut(s)	15, 232, 259, 496, 634, 643, 716
SfaNI	GCATC	2 cut(s)	157, 191
Sfr274I	CTCGAG	1 cut(s)	663
SinI	GGWCC	3 cut(s)	4, 635, 779
SlaI	CTCGAG	1 cut(s)	663
SmiMI	CAYNNNNRTG	1 cut(s)	101
SmlI	CTYRAG	1 cut(s)	663
SmoI	CTYRAG	1 cut(s)	663
Sse9I	AATT	4 cut(s)	74, 83, 399, 461
SsiI	CCGC	3 cut(s)	468, 593, 728
SspMI	CTAG	2 cut(s)	585, 671
StyD4I	CCNGG	2 cut(s)	272, 631
StyI	CCWWGG	2 cut(s)	501, 774
TaaI	ACNGT	1 cut(s)	8
TaqI	TCGA	5 cut(s)	42, 208, 490, 664, 721
TaqII	GACCGA	2 cut(s)	102, 114
TasI	AATT	4 cut(s)	74, 83, 399, 461
TauI	GCSGC	1 cut(s)	596
TfiI	GAWTC	2 cut(s)	428, 656
Tru1I	TTAA	1 cut(s)	222
Tru9I	TTAA	1 cut(s)	222
TseFI	GTSAC	1 cut(s)	304
TseI	GCWGC	2 cut(s)	179, 578
Tsp45I	GTSAC	1 cut(s)	304
TspDTI	ATGAA	2 cut(s)	119, 474
TspGWI	ACGGA	3 cut(s)	21, 62, 421
VpaK11BI	GGWCC	3 cut(s)	4, 635, 779
XapI	RAATTY	1 cut(s)	74
XceI	RCATGY	1 cut(s)	367
XcmI	CCANNNNNNNNNTGG	1 cut(s)	629
XhoI	CTCGAG	1 cut(s)	663
XspI	CTAG	2 cut(s)	585, 671

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.