AT4G38370

Phosphoglycerate mutase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0003894
Physical Location & Seq
Reverse (-)
17969907 .. 17971295
1389 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G38370.1

Sequence Viewer

Length: 678 bp
ATGGATTCGTCGTCAGTAGGGAACACCAACAGGTACTGGGTCCTCCGCCACGGCAAGAGCATTCCCAACGAGAGAGGCCTCGTCGTCTCTTCCATGGAAAATGGTGTCCTCCCCGAGTACCAGTTAGCCCCTGATGGTGTCGCTCAGGCTCGTCTCGCCGGCGAATCGTTCCTCCAGCAACTCAAGGAAAGTAACATAGAACTGGACAAGGTTCGCATTTGCTACTCCCCCTTCTCCAGAACCACTCACACCGCTAGGGTTGTTGCTAAGGTCCTCAATCTCCCCTTTGATGCTCCTCAATGCAAGATGATGGAAGATCTGCGCGAACGCTATTTTGGACCTACATTTGAACTCAAGTCCCATGACAAGTACCCAGAGATATGGGCTCTTGATGAAAAAGATCCTTTTATGGGACCAGAAGGAGGTGAAAGTGCTGATGATGTTGTTTCCCGACTTGCCACTGCCATGAAATCCATGGAAGCTGAATATCAAAGGTGTGCAATTCTGGTGGTGAGTCATGGAGATCCTCTGCAGATGTTGCAGAACGTTTTCCATTCAGCAAAGCAACAGGAAGGAGATGGTTTGGCAGAGAAGTTTCAGTTGAGCAGAGTTGCTTCTGTCTTGTCACAGCACCGCAAGTTTGCTTTGCTCACTGGGGAACTCCGACCCCTCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
His_Phos_1

Protein Analysis

225

Amino Acids

25.26

Weight (kDa)

5.9

Isoelectric Point (pI)

41.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
His_Phos_1 PF00300 13 - 192 8.7e-21 Histidine phosphatase superfamily (branch 1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 324
AciI CCGC 3 cut(s) 46, 252, 634
AclI AACGTT 1 cut(s) 546
AclWI GGATC 2 cut(s) 395, 518
AfaI GTAC 3 cut(s) 35, 119, 371
AfiI CCNNNNNNNGG 2 cut(s) 410, 422
AgsI TTSAA 1 cut(s) 350
AjuI GAANNNNNNNTTGG 2 cut(s) 318, 350
AluBI AGCT 1 cut(s) 482
AluI AGCT 1 cut(s) 482
Alw26I GTCTC 2 cut(s) 91, 158
AlwI GGATC 2 cut(s) 395, 518
AlwNI CAGNNNCTG 1 cut(s) 36
Ama87I CYCGRG 1 cut(s) 113
AoxI GGCC 1 cut(s) 76
Asp700I GAANNNNTTC 1 cut(s) 548
AspLEI GCGC 1 cut(s) 324
AspS9I GGNCC 4 cut(s) 40, 271, 338, 413
AsuHPI GGTGA 2 cut(s) 437, 523
AvaI CYCGRG 1 cut(s) 113
AvaII GGWCC 4 cut(s) 40, 271, 338, 413
BanII GRGCYC 1 cut(s) 388
BccI CCATC 3 cut(s) 128, 304, 572
BceAI ACGGC 1 cut(s) 67
BcoDI GTCTC 2 cut(s) 91, 158
BfaI CTAG 1 cut(s) 255
BfmI CTRYAG 1 cut(s) 530
BglII AGATCT 1 cut(s) 316
Bme18I GGWCC 4 cut(s) 40, 271, 338, 413
BmeT110I CYCGRG 1 cut(s) 113
BmgT120I GGNCC 4 cut(s) 40, 271, 338, 413
BmiI GGNNCC 2 cut(s) 41, 414
BmrI ACTGGG 2 cut(s) 46, 663
BmsI GCATC 1 cut(s) 280
BmuI ACTGGG 2 cut(s) 46, 663
BpmI CTGGAG 2 cut(s) 158, 220
Bpu10I CCTNAGC 2 cut(s) 144, 267
BpuEI CTTGAG 2 cut(s) 167, 338
BsaJI CCNNGG 3 cut(s) 49, 93, 474
Bsc4I CCNNNNNNNGG 2 cut(s) 410, 422
Bse118I RCCGGY 1 cut(s) 158
Bse1I ACTGG 4 cut(s) 41, 121, 207, 658
BseDI CCNNGG 3 cut(s) 49, 93, 474
BseLI CCNNNNNNNGG 2 cut(s) 410, 422
BseMII CTCAG 1 cut(s) 158
BseNI ACTGG 4 cut(s) 41, 121, 207, 658
BseRI GAGGAG 1 cut(s) 285
Bsh1236I CGCG 1 cut(s) 324
BshFI GGCC 1 cut(s) 78
BsiHKCI CYCGRG 1 cut(s) 113
BsiSI CCGG 1 cut(s) 159
BslFI GGGAC 2 cut(s) 343, 426
BslI CCNNNNNNNGG 2 cut(s) 410, 422
BsmAI GTCTC 2 cut(s) 91, 158
BsmBI CGTCTC 2 cut(s) 91, 158
BsmFI GGGAC 2 cut(s) 343, 426
BsmI GAATGC 1 cut(s) 60
BsnI GGCC 1 cut(s) 78
BsoBI CYCGRG 1 cut(s) 113
Bsp1286I GDGCHC 1 cut(s) 388
Bsp143I GATC 3 cut(s) 316, 400, 523
Bsp19I CCATGG 2 cut(s) 93, 474
BspACI CCGC 3 cut(s) 46, 252, 634
BspANI GGCC 1 cut(s) 78
BspCNI CTCAG 1 cut(s) 157
BspFNI CGCG 1 cut(s) 324
BspLI GGNNCC 2 cut(s) 41, 414
BspMAI CTGCAG 1 cut(s) 534
BspPI GGATC 2 cut(s) 395, 518
BsrFI RCCGGY 1 cut(s) 158
BsrI ACTGG 4 cut(s) 41, 121, 207, 658
BssAI RCCGGY 1 cut(s) 158
BssECI CCNNGG 3 cut(s) 49, 93, 474
BssMI GATC 3 cut(s) 316, 400, 523
BssT1I CCWWGG 2 cut(s) 93, 474
Bst6I CTCTTC 1 cut(s) 94
BstAPI GCANNNNNTGC 1 cut(s) 538
BstC8I GCNNGC 1 cut(s) 160
BstDEI CTNAG 2 cut(s) 144, 267
BstDSI CCRYGG 3 cut(s) 49, 93, 474
BstFNI CGCG 1 cut(s) 324
BstHHI GCGC 1 cut(s) 324
BstKTI GATC 3 cut(s) 319, 403, 526
BstMAI GTCTC 2 cut(s) 91, 158
BstMBI GATC 3 cut(s) 316, 400, 523
BstMWI GCNNNNNNNGC 2 cut(s) 155, 538
BstSFI CTRYAG 1 cut(s) 530
BstUI CGCG 1 cut(s) 324
BstX2I RGATCY 3 cut(s) 316, 400, 523
BstXI CCANNNNNNTGG 1 cut(s) 381
BstYI RGATCY 3 cut(s) 316, 400, 523
BsuRI GGCC 1 cut(s) 78
BtgI CCRYGG 3 cut(s) 49, 93, 474
BtsI GCAGTG 1 cut(s) 459
BtsIMutI CAGTG 2 cut(s) 459, 651
Cac8I GCNNGC 1 cut(s) 160
CaiI CAGNNNCTG 1 cut(s) 36
CfoI GCGC 1 cut(s) 324
Cfr10I RCCGGY 1 cut(s) 158
Cfr13I GGNCC 4 cut(s) 40, 271, 338, 413
Csp6I GTAC 3 cut(s) 34, 118, 370
CspCI CAANNNNNGTGG 2 cut(s) 489, 524
CviAII CATG 5 cut(s) 94, 362, 466, 475, 518
CviJI RGCY 5 cut(s) 78, 128, 149, 386, 482
CviKI_1 RGCY 5 cut(s) 78, 128, 149, 386, 482
CviQI GTAC 3 cut(s) 34, 118, 370
DdeI CTNAG 2 cut(s) 144, 267
DpnI GATC 3 cut(s) 318, 402, 525
DpnII GATC 3 cut(s) 316, 400, 523
Eam1104I CTCTTC 1 cut(s) 94
EarI CTCTTC 1 cut(s) 94
EciI GGCGGA 1 cut(s) 35
Eco130I CCWWGG 2 cut(s) 93, 474
Eco147I AGGCCT 1 cut(s) 78
Eco24I GRGCYC 1 cut(s) 388
Eco47I GGWCC 4 cut(s) 40, 271, 338, 413
Eco88I CYCGRG 1 cut(s) 113
EcoO109I RGGNCCY 2 cut(s) 40, 271
EcoT14I CCWWGG 2 cut(s) 93, 474
EcoT38I GRGCYC 1 cut(s) 388
ErhI CCWWGG 2 cut(s) 93, 474
Esp3I CGTCTC 2 cut(s) 91, 158
FaeI CATG 5 cut(s) 97, 365, 469, 478, 521
FaiI YATR 8 cut(s) 95, 197, 363, 382, 410, 467, 476, 519
FaqI GGGAC 2 cut(s) 343, 426
FatI CATG 5 cut(s) 93, 361, 465, 474, 517
FriOI GRGCYC 1 cut(s) 388
FspBI CTAG 1 cut(s) 255
GlaI GCGC 1 cut(s) 323
GsuI CTGGAG 2 cut(s) 158, 220
HaeIII GGCC 1 cut(s) 78
HapII CCGG 1 cut(s) 159
HhaI GCGC 1 cut(s) 324
Hin1II CATG 5 cut(s) 97, 365, 469, 478, 521
Hin6I GCGC 1 cut(s) 322
HinP1I GCGC 1 cut(s) 322
HinfI GANTC 3 cut(s) 5, 164, 514
HpaII CCGG 1 cut(s) 159
HphI GGTGA 2 cut(s) 437, 523
Hpy188I TCNGA 2 cut(s) 665, 677
Hpy188III TCNNGA 3 cut(s) 237, 389, 450
Hpy99I CGWCG 2 cut(s) 13, 86
HpyAV CCTTC 3 cut(s) 241, 413, 566
HpyCH4IV ACGT 1 cut(s) 546
HpyCH4V TGCA 4 cut(s) 303, 500, 532, 541
HpyF10VI GCNNNNNNNGC 2 cut(s) 155, 538
HpyF3I CTNAG 2 cut(s) 144, 267
HpySE526I ACGT 1 cut(s) 546
Hsp92II CATG 5 cut(s) 97, 365, 469, 478, 521
HspAI GCGC 1 cut(s) 322
KroI GCCGGC 1 cut(s) 158
KroNI GCCGGC 1 cut(s) 160
Kzo9I GATC 3 cut(s) 316, 400, 523
LmnI GCTCC 1 cut(s) 298
LweI GCATC 1 cut(s) 280
MaeI CTAG 1 cut(s) 255
MaeII ACGT 1 cut(s) 546
MaeIII GTNAC 2 cut(s) 191, 624
MalI GATC 3 cut(s) 318, 402, 525
MboI GATC 3 cut(s) 316, 400, 523
MboII GAAGA 2 cut(s) 81, 326
MflI RGATCY 3 cut(s) 316, 400, 523
MhlI GDGCHC 1 cut(s) 388
MluCI AATT 1 cut(s) 501
MlyI GAGTC 1 cut(s) 523
MnlI CCTC 9 cut(s) 53, 68, 89, 119, 182, 284, 306, 416, 537
MreI CGCCGGCG 1 cut(s) 158
MroNI GCCGGC 1 cut(s) 158
MroXI GAANNNNTTC 1 cut(s) 548
MslI CAYNNNNRTG 1 cut(s) 464
MspI CCGG 1 cut(s) 159
Mva1269I GAATGC 1 cut(s) 60
MvnI CGCG 1 cut(s) 324
MwoI GCNNNNNNNGC 2 cut(s) 155, 538
NaeI GCCGGC 1 cut(s) 160
NcoI CCATGG 2 cut(s) 93, 474
NdeII GATC 3 cut(s) 316, 400, 523
NgoMIV GCCGGC 1 cut(s) 158
NlaIII CATG 5 cut(s) 97, 365, 469, 478, 521
NlaIV GGNNCC 2 cut(s) 41, 414
NmuCI GTSAC 1 cut(s) 624
PceI AGGCCT 1 cut(s) 78
PctI GAATGC 1 cut(s) 60
PdiI GCCGGC 1 cut(s) 160
PdmI GAANNNNTTC 1 cut(s) 548
PfeI GAWTC 2 cut(s) 5, 164
PleI GAGTC 1 cut(s) 522
PpsI GAGTC 1 cut(s) 522
PpuMI RGGWCCY 2 cut(s) 40, 271
Psp1406I AACGTT 1 cut(s) 546
Psp5II RGGWCCY 2 cut(s) 40, 271
PspN4I GGNNCC 2 cut(s) 41, 414
PspPI GGNCC 4 cut(s) 40, 271, 338, 413
PspPPI RGGWCCY 2 cut(s) 40, 271
PstI CTGCAG 1 cut(s) 534
PstNI CAGNNNCTG 1 cut(s) 36
PsuI RGATCY 3 cut(s) 316, 400, 523
RsaI GTAC 3 cut(s) 35, 119, 371
RsaNI GTAC 3 cut(s) 34, 118, 370
RseI CAYNNNNRTG 1 cut(s) 464
Sau3AI GATC 3 cut(s) 316, 400, 523
Sau96I GGNCC 4 cut(s) 40, 271, 338, 413
SchI GAGTC 1 cut(s) 523
SduI GDGCHC 1 cut(s) 388
SetI ASST 8 cut(s) 35, 213, 273, 343, 427, 484, 497, 549
SfaNI GCATC 1 cut(s) 280
SfcI CTRYAG 1 cut(s) 530
SgrAI CRCCGGYG 1 cut(s) 158
SinI GGWCC 4 cut(s) 40, 271, 338, 413
SmiMI CAYNNNNRTG 1 cut(s) 464
SmlI CTYRAG 2 cut(s) 182, 353
SmoI CTYRAG 2 cut(s) 182, 353
Sse9I AATT 1 cut(s) 501
SseBI AGGCCT 1 cut(s) 78
SsiI CCGC 3 cut(s) 46, 252, 634
SspMI CTAG 1 cut(s) 255
StuI AGGCCT 1 cut(s) 78
StyI CCWWGG 2 cut(s) 93, 474
TaiI ACGT 1 cut(s) 549
TasI AATT 1 cut(s) 501
TfiI GAWTC 2 cut(s) 5, 164
TscAI CASTG 2 cut(s) 466, 658
TseFI GTSAC 1 cut(s) 624
Tsp45I GTSAC 1 cut(s) 624
TspDTI ATGAA 2 cut(s) 408, 482
TspRI CASTG 2 cut(s) 466, 658
VpaK11BI GGWCC 4 cut(s) 40, 271, 338, 413
XcmI CCANNNNNNNNNTGG 1 cut(s) 472
XmnI GAANNNNTTC 1 cut(s) 548
XspI CTAG 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.