Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015818.1

Orthogroup ID

OG0003894

Physical Location & Seq

Genomic Coordinates Forward (+)

25738 .. 26427

Gene Structure 690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015818.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

atgcggaggagttggattggggcgttggaaatggcggagacgacgtcgtttgcgaggaacagatactgggtactgaggcacggcaagagcattccgaatgagaaaggcctgatcgtctcctccatggaaaatgggacgcgcccagagtatcaattggcgccggaaggtgttgatcaagcaaaacgggctggagagttgttccgaaaggtacttgaggaaaatagcatgccaattgaaaatgttcgcatttgctattctcccttttcgagaacaagacagactgctgaagttgttgcatctgtcttgaatattcagtttgagggtgctcaatgtaaggtgagatggtcctgtgccaatgtctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

His_Phos_1

Protein Analysis

120

Amino Acids

13.68

Weight (kDa)

9.21

Isoelectric Point (pI)

49.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003894)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38370
fragaria_vesca	FvH4_2g16540 FvH4_7g04340
malus_domestica	MD05G1133800.v1.1 MD10G1138800.v1.1
prunus_persica	Prupe.8G177600_v2.0.a1 Prupe.8G177600_v2.0.a1
pyrus_communis	pycom05g13060 pycom10g11800
rosa_chinensis	RchiOBHm_Chr1g0329291 RchiOBHm_Chr6g0280561
rosa_laevigata	RLG00000013054 RLG00000029903
rosa_multiflora	Rmu_co8146946.1_g000001 Rmu_co8448883.1_g000001 Rmu_sc0015818.1_g000007
rosa_roxburghii	Rroxscaffold_4G00321230 Rroxscaffold_7G00187990
rosa_rugosa	Rorug06G0132000 Rorug06G0132000 Rorug06G0132100 Rorug06G0132200 Rorug06G0132300 Rorug06G0132400.1
rosa_samantha	Rh1AG096800 Rh1BG077400 Rh1CG093600 Rh1CG093700 Rh6AG244600 Rh6BG247000 Rh6CG248600 Rh6DG239800
rosa_wichuraiana	Rw1G007540 Rw6G021180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	47
AccB1I	GGYRCC	1 cut(s)	157
AccII	CGCG	1 cut(s)	139
AciI	CCGC	2 cut(s)	4, 35
AcuI	CTGAAG	1 cut(s)	306
AcyI	GRCGYC	2 cut(s)	44, 158
AfaI	GTAC	2 cut(s)	72, 210
AgsI	TTSAA	2 cut(s)	236, 307
Alw21I	GWGCWC	1 cut(s)	328
Alw26I	GTCTC	2 cut(s)	32, 121
AlwNI	CAGNNNCTG	1 cut(s)	66
AoxI	GGCC	1 cut(s)	106
Asp700I	GAANNNNTTC	1 cut(s)	240
AspLEI	GCGC	2 cut(s)	141, 160
AspS9I	GGNCC	1 cut(s)	345
AsuHPI	GGTGA	1 cut(s)	349
AvaII	GGWCC	1 cut(s)	345
BanI	GGYRCC	1 cut(s)	157
Bbv12I	GWGCWC	1 cut(s)	328
BccI	CCATC	1 cut(s)	336
BceAI	ACGGC	1 cut(s)	97
BclI	TGATCA	1 cut(s)	172
BcoDI	GTCTC	2 cut(s)	32, 121
BfoI	RGCGCY	1 cut(s)	161
Bme18I	GGWCC	1 cut(s)	345
BmgT120I	GGNCC	1 cut(s)	345
BmiI	GGNNCC	1 cut(s)	159
BmrI	ACTGGG	1 cut(s)	76
BmsI	GCATC	1 cut(s)	305
BmuI	ACTGGG	1 cut(s)	76
BpmI	CTGGAG	1 cut(s)	210
BpuEI	CTTGAG	1 cut(s)	233
BsaHI	GRCGYC	2 cut(s)	44, 158
BsaJI	CCNNGG	1 cut(s)	123
BsaXI	ACNNNNNCTCC	2 cut(s)	29, 59
Bse1I	ACTGG	1 cut(s)	71
BseDI	CCNNGG	1 cut(s)	123
BseMII	CTCAG	1 cut(s)	65
BseNI	ACTGG	1 cut(s)	71
BseRI	GAGGAG	2 cut(s)	22, 109
Bsh1236I	CGCG	1 cut(s)	139
BshFI	GGCC	1 cut(s)	108
BshNI	GGYRCC	1 cut(s)	157
BsiHKAI	GWGCWC	1 cut(s)	328
BsiSI	CCGG	1 cut(s)	161
BslFI	GGGAC	1 cut(s)	148
BsmAI	GTCTC	2 cut(s)	32, 121
BsmBI	CGTCTC	2 cut(s)	32, 121
BsmFI	GGGAC	1 cut(s)	148
BsmI	GAATGC	1 cut(s)	90
BsnI	GGCC	1 cut(s)	108
Bsp1286I	GDGCHC	1 cut(s)	328
Bsp143I	GATC	2 cut(s)	111, 172
Bsp19I	CCATGG	1 cut(s)	123
BspACI	CCGC	2 cut(s)	4, 35
BspANI	GGCC	1 cut(s)	108
BspCNI	CTCAG	1 cut(s)	66
BspFNI	CGCG	1 cut(s)	139
BspLI	GGNNCC	1 cut(s)	159
BspT107I	GGYRCC	1 cut(s)	157
BsrI	ACTGG	1 cut(s)	71
BssECI	CCNNGG	1 cut(s)	123
BssMI	GATC	2 cut(s)	111, 172
BssNI	GRCGYC	2 cut(s)	44, 158
BssT1I	CCWWGG	1 cut(s)	123
BstACI	GRCGYC	2 cut(s)	44, 158
BstC8I	GCNNGC	1 cut(s)	227
BstDEI	CTNAG	1 cut(s)	74
BstDSI	CCRYGG	1 cut(s)	123
BstFNI	CGCG	1 cut(s)	139
BstH2I	RGCGCY	1 cut(s)	161
BstHHI	GCGC	2 cut(s)	141, 160
BstKTI	GATC	2 cut(s)	114, 175
BstMAI	GTCTC	2 cut(s)	32, 121
BstMBI	GATC	2 cut(s)	111, 172
BstMWI	GCNNNNNNNGC	1 cut(s)	185
BstNSI	RCATGY	1 cut(s)	229
BstUI	CGCG	1 cut(s)	139
BsuRI	GGCC	1 cut(s)	108
BtgI	CCRYGG	1 cut(s)	123
Cac8I	GCNNGC	1 cut(s)	227
CaiI	CAGNNNCTG	1 cut(s)	66
CfoI	GCGC	2 cut(s)	141, 160
Cfr13I	GGNCC	1 cut(s)	345
CseI	GACGC	1 cut(s)	145
Csp6I	GTAC	2 cut(s)	71, 209
CviAII	CATG	2 cut(s)	124, 226
CviJI	RGCY	2 cut(s)	108, 188
CviKI_1	RGCY	2 cut(s)	108, 188
CviQI	GTAC	2 cut(s)	71, 209
DdeI	CTNAG	1 cut(s)	74
DinI	GGCGCC	1 cut(s)	159
DpnI	GATC	2 cut(s)	113, 174
DpnII	GATC	2 cut(s)	111, 172
EciI	GGCGGA	1 cut(s)	50
Eco130I	CCWWGG	1 cut(s)	123
Eco147I	AGGCCT	1 cut(s)	108
Eco47I	GGWCC	1 cut(s)	345
Eco57I	CTGAAG	1 cut(s)	306
EcoT14I	CCWWGG	1 cut(s)	123
EgeI	GGCGCC	1 cut(s)	159
EheI	GGCGCC	1 cut(s)	159
ErhI	CCWWGG	1 cut(s)	123
Esp3I	CGTCTC	2 cut(s)	32, 121
FaeI	CATG	2 cut(s)	127, 229
FaiI	YATR	2 cut(s)	125, 227
FaqI	GGGAC	1 cut(s)	148
FatI	CATG	2 cut(s)	123, 225
FbaI	TGATCA	1 cut(s)	172
GlaI	GCGC	2 cut(s)	140, 159
GsuI	CTGGAG	1 cut(s)	210
HaeII	RGCGCY	1 cut(s)	161
HaeIII	GGCC	1 cut(s)	108
HapII	CCGG	1 cut(s)	161
HgaI	GACGC	1 cut(s)	145
HhaI	GCGC	2 cut(s)	141, 160
Hin1I	GRCGYC	2 cut(s)	44, 158
Hin1II	CATG	2 cut(s)	127, 229
Hin6I	GCGC	2 cut(s)	139, 158
HinP1I	GCGC	2 cut(s)	139, 158
HpaII	CCGG	1 cut(s)	161
HphI	GGTGA	1 cut(s)	349
Hpy188I	TCNGA	2 cut(s)	96, 203
Hpy188III	TCNNGA	2 cut(s)	267, 304
Hpy99I	CGWCG	2 cut(s)	46, 49
HpyAV	CCTTC	1 cut(s)	158
HpyCH4IV	ACGT	1 cut(s)	44
HpyCH4V	TGCA	1 cut(s)	296
HpyF10VI	GCNNNNNNNGC	1 cut(s)	185
HpyF3I	CTNAG	1 cut(s)	74
HpySE526I	ACGT	1 cut(s)	44
Hsp92I	GRCGYC	2 cut(s)	44, 158
Hsp92II	CATG	2 cut(s)	127, 229
HspAI	GCGC	2 cut(s)	139, 158
KasI	GGCGCC	1 cut(s)	157
Ksp22I	TGATCA	1 cut(s)	172
Kzo9I	GATC	2 cut(s)	111, 172
LpnPI	CCDG	5 cut(s)	52, 122, 156, 174, 174
LweI	GCATC	1 cut(s)	305
MaeII	ACGT	1 cut(s)	44
MalI	GATC	2 cut(s)	113, 174
MboI	GATC	2 cut(s)	111, 172
MfeI	CAATTG	2 cut(s)	152, 231
MhlI	GDGCHC	1 cut(s)	328
MluCI	AATT	2 cut(s)	152, 231
Mly113I	GGCGCC	1 cut(s)	158
MmeI	TCCRAC	1 cut(s)	6
MnlI	CCTC	5 cut(s)	48, 69, 130, 208, 313
MroXI	GAANNNNTTC	1 cut(s)	240
MspI	CCGG	1 cut(s)	161
MunI	CAATTG	2 cut(s)	152, 231
Mva1269I	GAATGC	1 cut(s)	90
MvnI	CGCG	1 cut(s)	139
MwoI	GCNNNNNNNGC	1 cut(s)	185
NarI	GGCGCC	1 cut(s)	158
NcoI	CCATGG	1 cut(s)	123
NdeII	GATC	2 cut(s)	111, 172
NlaIII	CATG	2 cut(s)	127, 229
NlaIV	GGNNCC	1 cut(s)	159
NspI	RCATGY	1 cut(s)	229
PaeI	GCATGC	1 cut(s)	229
PceI	AGGCCT	1 cut(s)	108
PcsI	WCGNNNNNNNCGW	1 cut(s)	50
PctI	GAATGC	1 cut(s)	90
PdmI	GAANNNNTTC	1 cut(s)	240
PflFI	GACNNNGTC	1 cut(s)	43
PluTI	GGCGCC	1 cut(s)	161
PspN4I	GGNNCC	1 cut(s)	159
PspPI	GGNCC	1 cut(s)	345
PstNI	CAGNNNCTG	1 cut(s)	66
PsyI	GACNNNGTC	1 cut(s)	43
RsaI	GTAC	2 cut(s)	72, 210
RsaNI	GTAC	2 cut(s)	71, 209
Sau3AI	GATC	2 cut(s)	111, 172
Sau96I	GGNCC	1 cut(s)	345
SduI	GDGCHC	1 cut(s)	328
SetI	ASST	4 cut(s)	47, 169, 210, 339
SfaNI	GCATC	1 cut(s)	305
SfoI	GGCGCC	1 cut(s)	159
SinI	GGWCC	1 cut(s)	345
SmlI	CTYRAG	1 cut(s)	212
SmoI	CTYRAG	1 cut(s)	212
SphI	GCATGC	1 cut(s)	229
Sse9I	AATT	2 cut(s)	152, 231
SseBI	AGGCCT	1 cut(s)	108
SsiI	CCGC	2 cut(s)	4, 35
SspDI	GGCGCC	1 cut(s)	157
SspI	AATATT	1 cut(s)	310
StuI	AGGCCT	1 cut(s)	108
StyI	CCWWGG	1 cut(s)	123
TaiI	ACGT	1 cut(s)	47
TaqI	TCGA	1 cut(s)	266
TasI	AATT	2 cut(s)	152, 231
Tth111I	GACNNNGTC	1 cut(s)	43
VpaK11BI	GGWCC	1 cut(s)	345
XceI	RCATGY	1 cut(s)	229
XmnI	GAANNNNTTC	1 cut(s)	240
ZraI	GACGTC	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.