Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0003894

Physical Location & Seq

Genomic Coordinates Forward (+)

15375156 .. 15377053

Gene Structure 1898 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g11800.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGTACAATAAAATCACATACCGTACGTGGAGGGTGTGTGAAGAGGAGAAGGAGAGGAGTGCGGTGGCGGGGGGCGGTGTAGAGATGGCGGAGTTTCTGAGGAACAGATACTGGGTGCTGAGGCACGGGAAGAGCATTCCGAATGAGAGAGGCATCATTGTTTCTTCCATGGAAAATGGTACCCGCCCAGAATATCAATTGGCGCCAGAAGGTGTAAGTCAGGCACAATCAGCTGGACAATCATTCCAAAAGGTACTTGAGGAAAACAACGTACCGCTTGATAATGTTCGGATTTGCTACTCTCCGTTTTCAAGAACAAGTCAGACTGCTCAAGTTGTTGCATCTGTCCTGAACATTCCATTTGAGGGGGCTCAATGCAAGGTGATGGAAAATCTTCGTGAACGCTTCTTTGGTCCTTCGTATGAGCTTTTGTCACATGATAAATATCACGACATATGGGCTCTTGATGAGAAAGATCCACGCATGAGACCGGCAGAGGGAGGAGTGAGTGTCGATGATGTTGCGTGCAGACTTGCAGAAGCAATGGAAACTATGGAGTCACAATTTCAAGGGTGCACGATCTTAGTTGTTAGTCACGGCGATACCCTACAAATCTTGCAGACGATACTCAATGCTGCCAAGCTAAACGCGGGATCCAGTTACACTGACCTGTCATCAAGAATTCAAGCAGTTCGAACCCCTCCCATCTTATCACAGCACCGGAAGTTTTCCCTGCTTACAGCAGAGCTCCGGGCAGTGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

His_Phos_1

Protein Analysis

255

Amino Acids

28.53

Weight (kDa)

6.01

Isoelectric Point (pI)

43.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003894)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38370
fragaria_vesca	FvH4_2g16540 FvH4_7g04340
malus_domestica	MD05G1133800.v1.1 MD10G1138800.v1.1
prunus_persica	Prupe.8G177600_v2.0.a1 Prupe.8G177600_v2.0.a1
pyrus_communis	pycom05g13060 pycom10g11800
rosa_chinensis	RchiOBHm_Chr1g0329291 RchiOBHm_Chr6g0280561
rosa_laevigata	RLG00000013054 RLG00000029903
rosa_multiflora	Rmu_co8146946.1_g000001 Rmu_co8448883.1_g000001 Rmu_sc0015818.1_g000007
rosa_roxburghii	Rroxscaffold_4G00321230 Rroxscaffold_7G00187990
rosa_rugosa	Rorug06G0132000 Rorug06G0132000 Rorug06G0132100 Rorug06G0132200 Rorug06G0132300 Rorug06G0132400.1
rosa_samantha	Rh1AG096800 Rh1BG077400 Rh1CG093600 Rh1CG093700 Rh6AG244600 Rh6BG247000 Rh6CG248600 Rh6DG239800
rosa_wichuraiana	Rw1G007540 Rw6G021180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	179
AccB1I	GGYRCC	2 cut(s)	179, 202
AccII	CGCG	1 cut(s)	650
AciI	CCGC	7 cut(s)	62, 68, 75, 89, 184, 275, 650
AclWI	GGATC	3 cut(s)	470, 648, 661
AcsI	RAATTY	1 cut(s)	681
AcyI	GRCGYC	1 cut(s)	203
AfaI	GTAC	5 cut(s)	5, 25, 181, 255, 273
AfiI	CCNNNNNNNGG	2 cut(s)	365, 497
AgsI	TTSAA	3 cut(s)	312, 569, 686
AjuI	GAANNNNNNNTTGG	2 cut(s)	393, 425
AluBI	AGCT	4 cut(s)	233, 427, 643, 748
AluI	AGCT	4 cut(s)	233, 427, 643, 748
Alw21I	GWGCWC	2 cut(s)	578, 750
Alw26I	GTCTC	1 cut(s)	481
Alw44I	GTGCAC	1 cut(s)	574
AlwI	GGATC	3 cut(s)	470, 648, 661
AlwNI	CAGNNNCTG	1 cut(s)	111
ApaLI	GTGCAC	1 cut(s)	574
ApeKI	GCWGC	1 cut(s)	635
ApoI	RAATTY	1 cut(s)	681
Asp700I	GAANNNNTTC	1 cut(s)	393
Asp718I	GGTACC	1 cut(s)	179
AspLEI	GCGC	1 cut(s)	205
AspS9I	GGNCC	1 cut(s)	413
AsuC2I	CCSGG	1 cut(s)	752
AsuHPI	GGTGA	1 cut(s)	394
AsuII	TTCGAA	1 cut(s)	694
AvaII	GGWCC	1 cut(s)	413
BaeGI	GKGCMC	1 cut(s)	578
BamHI	GGATCC	1 cut(s)	653
BanI	GGYRCC	2 cut(s)	179, 202
BanII	GRGCYC	3 cut(s)	373, 463, 750
Bbv12I	GWGCWC	2 cut(s)	578, 750
BbvCI	CCTCAGC	1 cut(s)	119
BbvI	GCAGC	1 cut(s)	622
BccI	CCATC	3 cut(s)	79, 379, 713
BceAI	ACGGC	1 cut(s)	613
BcgI	CGANNNNNNTGC	2 cut(s)	503, 537
BcnI	CCSGG	1 cut(s)	752
BcoDI	GTCTC	1 cut(s)	481
BfoI	RGCGCY	1 cut(s)	206
BisI	GCNGC	1 cut(s)	636
BlsI	GCNGC	1 cut(s)	637
Bme1390I	CCNGG	1 cut(s)	752
Bme18I	GGWCC	1 cut(s)	413
BmgT120I	GGNCC	1 cut(s)	413
BmiI	GGNNCC	3 cut(s)	181, 204, 655
BmrFI	CCNGG	1 cut(s)	752
BmrI	ACTGGG	1 cut(s)	121
BmsI	GCATC	2 cut(s)	162, 350
BmuI	ACTGGG	1 cut(s)	121
Bpu10I	CCTNAGC	1 cut(s)	119
Bpu14I	TTCGAA	1 cut(s)	694
BpuEI	CTTGAG	2 cut(s)	278, 315
BpuMI	CCSGG	1 cut(s)	752
BsaAI	YACGTR	1 cut(s)	27
BsaBI	GATNNNNATC	1 cut(s)	444
BsaHI	GRCGYC	1 cut(s)	203
BsaI	GGTCTC	1 cut(s)	481
BsaJI	CCNNGG	1 cut(s)	168
BsaWI	WCCGGW	1 cut(s)	720
BsaXI	ACNNNNNCTCC	4 cut(s)	22, 52, 495, 525
Bsc4I	CCNNNNNNNGG	2 cut(s)	365, 497
Bse118I	RCCGGY	1 cut(s)	490
Bse1I	ACTGG	2 cut(s)	116, 657
Bse3DI	GCAATG	1 cut(s)	549
Bse8I	GATNNNNATC	1 cut(s)	444
BseDI	CCNNGG	1 cut(s)	168
BseJI	GATNNNNATC	1 cut(s)	444
BseLI	CCNNNNNNNGG	2 cut(s)	365, 497
BseMI	GCAATG	1 cut(s)	549
BseMII	CTCAG	2 cut(s)	89, 110
BseNI	ACTGG	2 cut(s)	116, 657
BseRI	GAGGAG	3 cut(s)	59, 70, 516
BseSI	GKGCMC	1 cut(s)	578
BseXI	GCAGC	1 cut(s)	622
BsgI	GTGCAG	1 cut(s)	547
Bsh1236I	CGCG	1 cut(s)	650
BshNI	GGYRCC	2 cut(s)	179, 202
BsiHKAI	GWGCWC	2 cut(s)	578, 750
BsiSI	CCGG	3 cut(s)	491, 721, 751
BsiWI	CGTACG	1 cut(s)	23
BslI	CCNNNNNNNGG	2 cut(s)	365, 497
BsmAI	GTCTC	1 cut(s)	481
BsmI	GAATGC	1 cut(s)	135
Bso31I	GGTCTC	1 cut(s)	481
Bsp119I	TTCGAA	1 cut(s)	694
Bsp1286I	GDGCHC	4 cut(s)	373, 463, 578, 750
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	3 cut(s)	475, 579, 653
Bsp19I	CCATGG	1 cut(s)	168
BspACI	CCGC	7 cut(s)	62, 68, 75, 89, 184, 275, 650
BspCNI	CTCAG	2 cut(s)	90, 111
BspFNI	CGCG	1 cut(s)	650
BspLI	GGNNCC	3 cut(s)	181, 204, 655
BspPI	GGATC	3 cut(s)	470, 648, 661
BspQI	GCTCTTC	1 cut(s)	125
BspT104I	TTCGAA	1 cut(s)	694
BspT107I	GGYRCC	2 cut(s)	179, 202
BspTNI	GGTCTC	1 cut(s)	481
BsrDI	GCAATG	1 cut(s)	549
BsrFI	RCCGGY	1 cut(s)	490
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	2 cut(s)	116, 657
BssAI	RCCGGY	1 cut(s)	490
BssECI	CCNNGG	1 cut(s)	168
BssMI	GATC	3 cut(s)	475, 579, 653
BssNI	GRCGYC	1 cut(s)	203
BssT1I	CCWWGG	1 cut(s)	168
Bst4CI	ACNGT	1 cut(s)	23
Bst6I	CTCTTC	2 cut(s)	36, 125
BstACI	GRCGYC	1 cut(s)	203
BstAUI	TGTACA	1 cut(s)	3
BstBAI	YACGTR	1 cut(s)	27
BstBI	TTCGAA	1 cut(s)	694
BstC8I	GCNNGC	1 cut(s)	526
BstDEI	CTNAG	3 cut(s)	98, 119, 583
BstDSI	CCRYGG	1 cut(s)	168
BstFNI	CGCG	1 cut(s)	650
BstH2I	RGCGCY	1 cut(s)	206
BstHHI	GCGC	1 cut(s)	205
BstKTI	GATC	3 cut(s)	478, 582, 656
BstMAI	GTCTC	1 cut(s)	481
BstMBI	GATC	3 cut(s)	475, 579, 653
BstMWI	GCNNNNNNNGC	1 cut(s)	230
BstSCI	CCNGG	1 cut(s)	750
BstSLI	GKGCMC	1 cut(s)	578
BstUI	CGCG	1 cut(s)	650
BstV1I	GCAGC	1 cut(s)	622
BstX2I	RGATCY	2 cut(s)	475, 653
BstYI	RGATCY	2 cut(s)	475, 653
BtgI	CCRYGG	1 cut(s)	168
BtsI	GCAGTG	1 cut(s)	762
BtsIMutI	CAGTG	2 cut(s)	663, 762
Cac8I	GCNNGC	1 cut(s)	526
CaiI	CAGNNNCTG	1 cut(s)	111
CfoI	GCGC	1 cut(s)	205
Cfr10I	RCCGGY	1 cut(s)	490
Cfr13I	GGNCC	1 cut(s)	413
Csp6I	GTAC	5 cut(s)	4, 24, 180, 254, 272
CviAII	CATG	3 cut(s)	169, 437, 484
CviJI	RGCY	6 cut(s)	233, 371, 427, 461, 643, 748
CviKI_1	RGCY	6 cut(s)	233, 371, 427, 461, 643, 748
CviQI	GTAC	5 cut(s)	4, 24, 180, 254, 272
DdeI	CTNAG	3 cut(s)	98, 119, 583
DinI	GGCGCC	1 cut(s)	204
DpnI	GATC	3 cut(s)	477, 581, 655
DpnII	GATC	3 cut(s)	475, 579, 653
Eam1104I	CTCTTC	2 cut(s)	36, 125
EarI	CTCTTC	2 cut(s)	36, 125
EciI	GGCGGA	1 cut(s)	104
Ecl136II	GAGCTC	1 cut(s)	748
Eco130I	CCWWGG	1 cut(s)	168
Eco24I	GRGCYC	3 cut(s)	373, 463, 750
Eco31I	GGTCTC	1 cut(s)	481
Eco47I	GGWCC	1 cut(s)	413
Eco53kI	GAGCTC	1 cut(s)	748
EcoICRI	GAGCTC	1 cut(s)	748
EcoRI	GAATTC	1 cut(s)	681
EcoT14I	CCWWGG	1 cut(s)	168
EcoT38I	GRGCYC	3 cut(s)	373, 463, 750
EgeI	GGCGCC	1 cut(s)	204
EheI	GGCGCC	1 cut(s)	204
ErhI	CCWWGG	1 cut(s)	168
FaeI	CATG	3 cut(s)	172, 440, 487
FaiI	YATR	9 cut(s)	19, 170, 423, 438, 455, 457, 485, 554, 763
FatI	CATG	3 cut(s)	168, 436, 483
FauI	CCCGC	3 cut(s)	61, 191, 643
FauNDI	CATATG	1 cut(s)	455
Fnu4HI	GCNGC	1 cut(s)	636
FriOI	GRGCYC	3 cut(s)	373, 463, 750
Fsp4HI	GCNGC	1 cut(s)	636
GlaI	GCGC	1 cut(s)	204
GluI	GCNGC	1 cut(s)	636
HaeII	RGCGCY	1 cut(s)	206
HapII	CCGG	3 cut(s)	491, 721, 751
HhaI	GCGC	1 cut(s)	205
Hin1I	GRCGYC	1 cut(s)	203
Hin1II	CATG	3 cut(s)	172, 440, 487
Hin6I	GCGC	1 cut(s)	203
HinP1I	GCGC	1 cut(s)	203
HinfI	GANTC	1 cut(s)	557
HpaII	CCGG	3 cut(s)	491, 721, 751
HphI	GGTGA	1 cut(s)	394
Hpy166II	GTNNAC	2 cut(s)	401, 576
Hpy188I	TCNGA	4 cut(s)	99, 141, 291, 324
Hpy188III	TCNNGA	6 cut(s)	312, 349, 398, 449, 464, 678
Hpy8I	GTNNAC	2 cut(s)	401, 576
HpyAV	CCTTC	3 cut(s)	43, 203, 426
HpyCH4III	ACNGT	1 cut(s)	23
HpyCH4IV	ACGT	2 cut(s)	26, 270
HpyCH4V	TGCA	6 cut(s)	341, 378, 528, 536, 576, 619
HpyF10VI	GCNNNNNNNGC	1 cut(s)	230
HpyF3I	CTNAG	3 cut(s)	98, 119, 583
HpySE526I	ACGT	2 cut(s)	26, 270
Hsp92I	GRCGYC	1 cut(s)	203
Hsp92II	CATG	3 cut(s)	172, 440, 487
HspAI	GCGC	1 cut(s)	203
KasI	GGCGCC	1 cut(s)	202
KpnI	GGTACC	1 cut(s)	183
Kzo9I	GATC	3 cut(s)	475, 579, 653
LguI	GCTCTTC	1 cut(s)	125
LmnI	GCTCC	1 cut(s)	753
Lsp1109I	GCAGC	1 cut(s)	622
LweI	GCATC	2 cut(s)	162, 350
MaeII	ACGT	2 cut(s)	26, 270
MaeIII	GTNAC	4 cut(s)	432, 558, 593, 659
MalI	GATC	3 cut(s)	477, 581, 655
MboI	GATC	3 cut(s)	475, 579, 653
MboII	GAAGA	4 cut(s)	53, 142, 156, 386
MfeI	CAATTG	1 cut(s)	197
MflI	RGATCY	2 cut(s)	475, 653
MhlI	GDGCHC	4 cut(s)	373, 463, 578, 750
MluCI	AATT	3 cut(s)	197, 563, 681
Mly113I	GGCGCC	1 cut(s)	203
MlyI	GAGTC	1 cut(s)	566
MroXI	GAANNNNTTC	1 cut(s)	393
MspA1I	CMGCKG	1 cut(s)	233
MspI	CCGG	3 cut(s)	491, 721, 751
MspR9I	CCNGG	1 cut(s)	752
MunI	CAATTG	1 cut(s)	197
Mva1269I	GAATGC	1 cut(s)	135
MvnI	CGCG	1 cut(s)	650
MwoI	GCNNNNNNNGC	1 cut(s)	230
NarI	GGCGCC	1 cut(s)	203
NciI	CCSGG	1 cut(s)	752
NcoI	CCATGG	1 cut(s)	168
NdeI	CATATG	1 cut(s)	455
NdeII	GATC	3 cut(s)	475, 579, 653
NlaIII	CATG	3 cut(s)	172, 440, 487
NlaIV	GGNNCC	3 cut(s)	181, 204, 655
NmuCI	GTSAC	3 cut(s)	432, 558, 593
NspV	TTCGAA	1 cut(s)	694
PciSI	GCTCTTC	1 cut(s)	125
PctI	GAATGC	1 cut(s)	135
PdmI	GAANNNNTTC	1 cut(s)	393
Pfl23II	CGTACG	1 cut(s)	23
PkrI	GCNGC	1 cut(s)	637
PleI	GAGTC	1 cut(s)	565
PluTI	GGCGCC	1 cut(s)	206
PpsI	GAGTC	1 cut(s)	565
Ppu21I	YACGTR	1 cut(s)	27
Psp124BI	GAGCTC	1 cut(s)	750
PspLI	CGTACG	1 cut(s)	23
PspN4I	GGNNCC	3 cut(s)	181, 204, 655
PspPI	GGNCC	1 cut(s)	413
PstNI	CAGNNNCTG	1 cut(s)	111
PsuI	RGATCY	2 cut(s)	475, 653
PvuII	CAGCTG	1 cut(s)	233
RsaI	GTAC	5 cut(s)	5, 25, 181, 255, 273
RsaNI	GTAC	5 cut(s)	4, 24, 180, 254, 272
SacI	GAGCTC	1 cut(s)	750
SapI	GCTCTTC	1 cut(s)	125
SatI	GCNGC	1 cut(s)	636
Sau3AI	GATC	3 cut(s)	475, 579, 653
Sau96I	GGNCC	1 cut(s)	413
SchI	GAGTC	1 cut(s)	566
ScrFI	CCNGG	1 cut(s)	752
SduI	GDGCHC	4 cut(s)	373, 463, 578, 750
SfaNI	GCATC	2 cut(s)	162, 350
SfoI	GGCGCC	1 cut(s)	204
SfuI	TTCGAA	1 cut(s)	694
SinI	GGWCC	1 cut(s)	413
SmlI	CTYRAG	2 cut(s)	257, 330
SmoI	CTYRAG	2 cut(s)	257, 330
Sse9I	AATT	3 cut(s)	197, 563, 681
SsiI	CCGC	7 cut(s)	62, 68, 75, 89, 184, 275, 650
SspDI	GGCGCC	1 cut(s)	202
SstI	GAGCTC	1 cut(s)	750
StyD4I	CCNGG	1 cut(s)	750
StyI	CCWWGG	1 cut(s)	168
TaaI	ACNGT	1 cut(s)	23
TaiI	ACGT	2 cut(s)	29, 273
TaqI	TCGA	2 cut(s)	513, 694
TasI	AATT	3 cut(s)	197, 563, 681
TatI	WGTACW	1 cut(s)	3
TscAI	CASTG	2 cut(s)	670, 762
TseFI	GTSAC	3 cut(s)	432, 558, 593
TseI	GCWGC	1 cut(s)	635
Tsp45I	GTSAC	3 cut(s)	432, 558, 593
TspGWI	ACGGA	1 cut(s)	294
TspRI	CASTG	2 cut(s)	670, 762
VneI	GTGCAC	1 cut(s)	574
VpaK11BI	GGWCC	1 cut(s)	413
XapI	RAATTY	1 cut(s)	681
XmnI	GAANNNNTTC	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.