Rroxscaffold_4G00321230
ERF Family

Histidine phosphatase superfamily (branch 1)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0003894
Physical Location & Seq
Forward (+)
50515857 .. 50518155
2299 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00321230.1

Sequence Viewer

Length: 690 bp
ATGGCGGAGACGACGTCGTTCATGAGAAACAAATACTGGGTATTGAGGCACGGCAGGAGCATTCCAAATGAGAAAGGCCTCATTGTTTCCTCCATGGAAAATGGTACCCGCCCAGAATATCAATTGGCGCCACAAGGTGTTAATCAGGCTCAATTAGCTGGAGAACTGTTCAAAAAGTTACTTGAGGAAAGTTGCATACCACTTGCAAATGTTCGCATTTGCTACTCTCCGTTTTCGAGAACAACTCAGACTGCTCGAATTGTTGCTTCTGTCTTGAACATTCAATTTGATGGTCATCAATGTAAGGTGATGGAAACCCTCCGCGAACGCTTCTTTGGTCCTTCATTTGAGCTTGGGTCTCGTGATGAATACCATGAGATATATGGCACACTTGATGAGAAAGATCCTCTGGCGAGGCCAGAAGGCGGAGAAAGTGCTGATGATGTTGCGTCTAGACTTGCAGAAGCTATGGTAACTATGGAGTCTCTATTTCAAGGGTGCACGATCTTAGTTGTTAGTCATGGCGATCCCCTACAAATCTTGCAAGCTATATTGAATGCTACTAAGCTAAACACTGAATCCAGCTATGACTACTTGGCATCAAGAATTCAAATTGTTAGAGCTCCTTCCATCTTGTCACAGCACAGAAAATTTAACCTGCGAACTGGGGAGCTCCGGCCAGTTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
His_Phos_1

Protein Analysis

229

Amino Acids

25.74

Weight (kDa)

6.23

Isoelectric Point (pI)

44.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
His_Phos_1 PF00300 13 - 190 2.2e-21 Histidine phosphatase superfamily (branch 1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 17
Acc36I ACCTGC 1 cut(s) 666
Acc65I GGTACC 1 cut(s) 104
AccB1I GGYRCC 2 cut(s) 104, 127
AccII CGCG 1 cut(s) 324
AciI CCGC 4 cut(s) 5, 109, 322, 426
AclWI GGATC 2 cut(s) 398, 521
AcoI YGGCCR 1 cut(s) 677
AcsI RAATTY 2 cut(s) 606, 650
AcyI GRCGYC 2 cut(s) 14, 128
AdeI CACNNNGTG 1 cut(s) 137
AfaI GTAC 1 cut(s) 106
AfiI CCNNNNNNNGG 1 cut(s) 425
AgsI TTSAA 6 cut(s) 172, 277, 284, 494, 556, 611
AjuI GAANNNNNNNTTGG 2 cut(s) 318, 350
AluBI AGCT 8 cut(s) 158, 352, 467, 548, 568, 585, 623, 673
AluI AGCT 8 cut(s) 158, 352, 467, 548, 568, 585, 623, 673
Alw21I GWGCWC 3 cut(s) 503, 625, 675
Alw26I GTCTC 3 cut(s) 2, 363, 489
Alw44I GTGCAC 1 cut(s) 499
AlwI GGATC 2 cut(s) 398, 521
AoxI GGCC 3 cut(s) 76, 416, 677
ApaLI GTGCAC 1 cut(s) 499
ApoI RAATTY 2 cut(s) 606, 650
Asp718I GGTACC 1 cut(s) 104
AspLEI GCGC 1 cut(s) 130
AspS9I GGNCC 1 cut(s) 338
AsuHPI GGTGA 1 cut(s) 319
AvaII GGWCC 1 cut(s) 338
BaeGI GKGCMC 1 cut(s) 503
BanI GGYRCC 2 cut(s) 104, 127
BanII GRGCYC 2 cut(s) 625, 675
BauI CACGAG 1 cut(s) 360
Bbv12I GWGCWC 3 cut(s) 503, 625, 675
BccI CCATC 3 cut(s) 284, 304, 638
BceAI ACGGC 1 cut(s) 67
BcoDI GTCTC 3 cut(s) 2, 363, 489
BfaI CTAG 1 cut(s) 453
BfoI RGCGCY 1 cut(s) 131
BfuAI ACCTGC 1 cut(s) 666
Bme18I GGWCC 1 cut(s) 338
BmgT120I GGNCC 1 cut(s) 338
BmiI GGNNCC 2 cut(s) 106, 129
BmrI ACTGGG 2 cut(s) 46, 675
BmsI GCATC 1 cut(s) 608
BmuI ACTGGG 2 cut(s) 46, 675
BplI GAGNNNNNCTC 2 cut(s) 229, 261
BpmI CTGGAG 1 cut(s) 180
BpuEI CTTGAG 1 cut(s) 203
BsaBI GATNNNNATC 1 cut(s) 294
BsaHI GRCGYC 2 cut(s) 14, 128
BsaI GGTCTC 1 cut(s) 363
BsaJI CCNNGG 1 cut(s) 93
BsaXI ACNNNNNCTCC 1 cut(s) 29
Bsc4I CCNNNNNNNGG 1 cut(s) 425
Bse1I ACTGG 3 cut(s) 41, 670, 680
Bse8I GATNNNNATC 1 cut(s) 294
BseDI CCNNGG 1 cut(s) 93
BseJI GATNNNNATC 1 cut(s) 294
BseLI CCNNNNNNNGG 1 cut(s) 425
BseMII CTCAG 1 cut(s) 260
BseNI ACTGG 3 cut(s) 41, 670, 680
BseSI GKGCMC 1 cut(s) 503
Bsh1236I CGCG 1 cut(s) 324
BshFI GGCC 3 cut(s) 78, 418, 679
BshNI GGYRCC 2 cut(s) 104, 127
BsiHKAI GWGCWC 3 cut(s) 503, 625, 675
BsiSI CCGG 1 cut(s) 676
BslI CCNNNNNNNGG 1 cut(s) 425
BsmAI GTCTC 3 cut(s) 2, 363, 489
BsmBI CGTCTC 1 cut(s) 2
BsmI GAATGC 2 cut(s) 60, 562
BsnI GGCC 3 cut(s) 78, 418, 679
Bso31I GGTCTC 1 cut(s) 363
Bsp1286I GDGCHC 3 cut(s) 503, 625, 675
Bsp143I GATC 3 cut(s) 403, 504, 526
Bsp19I CCATGG 1 cut(s) 93
BspACI CCGC 4 cut(s) 5, 109, 322, 426
BspANI GGCC 3 cut(s) 78, 418, 679
BspCNI CTCAG 1 cut(s) 259
BspFNI CGCG 1 cut(s) 324
BspHI TCATGA 1 cut(s) 21
BspLI GGNNCC 2 cut(s) 106, 129
BspMI ACCTGC 1 cut(s) 666
BspPI GGATC 2 cut(s) 398, 521
BspT107I GGYRCC 2 cut(s) 104, 127
BspTNI GGTCTC 1 cut(s) 363
BsrI ACTGG 3 cut(s) 41, 670, 680
BssECI CCNNGG 1 cut(s) 93
BssMI GATC 3 cut(s) 403, 504, 526
BssNI GRCGYC 2 cut(s) 14, 128
BssSI CACGAG 1 cut(s) 360
BssT1I CCWWGG 1 cut(s) 93
Bst2BI CACGAG 1 cut(s) 360
Bst4CI ACNGT 1 cut(s) 168
BstACI GRCGYC 2 cut(s) 14, 128
BstC8I GCNNGC 1 cut(s) 546
BstDEI CTNAG 3 cut(s) 246, 508, 564
BstDSI CCRYGG 1 cut(s) 93
BstFNI CGCG 1 cut(s) 324
BstH2I RGCGCY 1 cut(s) 131
BstHHI GCGC 1 cut(s) 130
BstKTI GATC 3 cut(s) 406, 507, 529
BstMAI GTCTC 3 cut(s) 2, 363, 489
BstMBI GATC 3 cut(s) 403, 504, 526
BstMWI GCNNNNNNNGC 1 cut(s) 155
BstSLI GKGCMC 1 cut(s) 503
BstUI CGCG 1 cut(s) 324
BstX2I RGATCY 1 cut(s) 403
BstYI RGATCY 1 cut(s) 403
BsuRI GGCC 3 cut(s) 78, 418, 679
BtgI CCRYGG 1 cut(s) 93
BtsIMutI CAGTG 1 cut(s) 573
BveI ACCTGC 1 cut(s) 666
Cac8I GCNNGC 1 cut(s) 546
CciI TCATGA 1 cut(s) 21
CfoI GCGC 1 cut(s) 130
Cfr13I GGNCC 1 cut(s) 338
CseI GACGC 1 cut(s) 438
Csp6I GTAC 1 cut(s) 105
CviAII CATG 4 cut(s) 22, 94, 374, 521
CviQI GTAC 1 cut(s) 105
DdeI CTNAG 3 cut(s) 246, 508, 564
DinI GGCGCC 1 cut(s) 129
DpnI GATC 3 cut(s) 405, 506, 528
DpnII GATC 3 cut(s) 403, 504, 526
DraIII CACNNNGTG 1 cut(s) 137
EaeI YGGCCR 1 cut(s) 677
EciI GGCGGA 2 cut(s) 20, 441
Ecl136II GAGCTC 2 cut(s) 623, 673
Eco130I CCWWGG 1 cut(s) 93
Eco147I AGGCCT 1 cut(s) 78
Eco24I GRGCYC 2 cut(s) 625, 675
Eco31I GGTCTC 1 cut(s) 363
Eco47I GGWCC 1 cut(s) 338
Eco53kI GAGCTC 2 cut(s) 623, 673
EcoICRI GAGCTC 2 cut(s) 623, 673
EcoRI GAATTC 1 cut(s) 606
EcoT14I CCWWGG 1 cut(s) 93
EcoT38I GRGCYC 2 cut(s) 625, 675
EgeI GGCGCC 1 cut(s) 129
EheI GGCGCC 1 cut(s) 129
ErhI CCWWGG 1 cut(s) 93
Esp3I CGTCTC 1 cut(s) 2
FaeI CATG 4 cut(s) 25, 97, 377, 524
FatI CATG 4 cut(s) 21, 93, 373, 520
FauI CCCGC 1 cut(s) 116
FriOI GRGCYC 2 cut(s) 625, 675
FspBI CTAG 1 cut(s) 453
GlaI GCGC 1 cut(s) 129
GsuI CTGGAG 1 cut(s) 180
HaeII RGCGCY 1 cut(s) 131
HaeIII GGCC 3 cut(s) 78, 418, 679
HapII CCGG 1 cut(s) 676
HgaI GACGC 1 cut(s) 438
HhaI GCGC 1 cut(s) 130
Hin1I GRCGYC 2 cut(s) 14, 128
Hin1II CATG 4 cut(s) 25, 97, 377, 524
Hin6I GCGC 1 cut(s) 128
HinP1I GCGC 1 cut(s) 128
HinfI GANTC 2 cut(s) 482, 578
HpaII CCGG 1 cut(s) 676
HphI GGTGA 1 cut(s) 319
Hpy166II GTNNAC 1 cut(s) 501
Hpy188I TCNGA 1 cut(s) 249
Hpy188III TCNNGA 6 cut(s) 22, 237, 274, 362, 453, 603
Hpy8I GTNNAC 1 cut(s) 501
Hpy99I CGWCG 2 cut(s) 16, 19
HpyAV CCTTC 3 cut(s) 351, 416, 636
HpyCH4III ACNGT 1 cut(s) 168
HpyCH4IV ACGT 1 cut(s) 14
HpyCH4V TGCA 5 cut(s) 195, 206, 461, 501, 544
HpyF10VI GCNNNNNNNGC 1 cut(s) 155
HpyF3I CTNAG 3 cut(s) 246, 508, 564
HpySE526I ACGT 1 cut(s) 14
Hsp92I GRCGYC 2 cut(s) 14, 128
Hsp92II CATG 4 cut(s) 25, 97, 377, 524
HspAI GCGC 1 cut(s) 128
KasI GGCGCC 1 cut(s) 127
KpnI GGTACC 1 cut(s) 108
Kzo9I GATC 3 cut(s) 403, 504, 526
LmnI GCTCC 4 cut(s) 57, 628, 670, 678
LweI GCATC 1 cut(s) 608
MaeI CTAG 1 cut(s) 453
MaeII ACGT 1 cut(s) 14
MaeIII GTNAC 3 cut(s) 177, 472, 636
MalI GATC 3 cut(s) 405, 506, 528
MboI GATC 3 cut(s) 403, 504, 526
MfeI CAATTG 1 cut(s) 122
MflI RGATCY 1 cut(s) 403
MhlI GDGCHC 3 cut(s) 503, 625, 675
MluCI AATT 7 cut(s) 122, 152, 258, 284, 606, 612, 650
Mly113I GGCGCC 1 cut(s) 128
MlyI GAGTC 1 cut(s) 491
MnlI CCTC 7 cut(s) 39, 89, 100, 178, 329, 408, 417
MseI TTAA 2 cut(s) 141, 654
MspI CCGG 1 cut(s) 676
MunI CAATTG 1 cut(s) 122
Mva1269I GAATGC 2 cut(s) 60, 562
MvnI CGCG 1 cut(s) 324
MwoI GCNNNNNNNGC 1 cut(s) 155
NarI GGCGCC 1 cut(s) 128
NcoI CCATGG 1 cut(s) 93
NdeII GATC 3 cut(s) 403, 504, 526
NlaIII CATG 4 cut(s) 25, 97, 377, 524
NlaIV GGNNCC 2 cut(s) 106, 129
NmuCI GTSAC 1 cut(s) 636
PagI TCATGA 1 cut(s) 21
PceI AGGCCT 1 cut(s) 78
PctI GAATGC 2 cut(s) 60, 562
PfeI GAWTC 1 cut(s) 578
PflFI GACNNNGTC 1 cut(s) 13
PleI GAGTC 1 cut(s) 490
PluTI GGCGCC 1 cut(s) 131
PpsI GAGTC 1 cut(s) 490
Psp124BI GAGCTC 2 cut(s) 625, 675
PspN4I GGNNCC 2 cut(s) 106, 129
PspPI GGNCC 1 cut(s) 338
PsuI RGATCY 1 cut(s) 403
PsyI GACNNNGTC 1 cut(s) 13
RsaI GTAC 1 cut(s) 106
RsaNI GTAC 1 cut(s) 105
SacI GAGCTC 2 cut(s) 625, 675
SaqAI TTAA 2 cut(s) 141, 654
Sau3AI GATC 3 cut(s) 403, 504, 526
Sau96I GGNCC 1 cut(s) 338
SchI GAGTC 1 cut(s) 491
SduI GDGCHC 3 cut(s) 503, 625, 675
SfaNI GCATC 1 cut(s) 608
SfoI GGCGCC 1 cut(s) 129
SinI GGWCC 1 cut(s) 338
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
Sse9I AATT 7 cut(s) 122, 152, 258, 284, 606, 612, 650
SseBI AGGCCT 1 cut(s) 78
SsiI CCGC 4 cut(s) 5, 109, 322, 426
SspDI GGCGCC 1 cut(s) 127
SspMI CTAG 1 cut(s) 453
SstI GAGCTC 2 cut(s) 625, 675
StuI AGGCCT 1 cut(s) 78
StyI CCWWGG 1 cut(s) 93
TaaI ACNGT 1 cut(s) 168
TaiI ACGT 1 cut(s) 17
TaqI TCGA 2 cut(s) 236, 256
TasI AATT 7 cut(s) 122, 152, 258, 284, 606, 612, 650
TfiI GAWTC 1 cut(s) 578
Tru1I TTAA 2 cut(s) 141, 654
Tru9I TTAA 2 cut(s) 141, 654
TscAI CASTG 1 cut(s) 580
TseFI GTSAC 1 cut(s) 636
Tsp45I GTSAC 1 cut(s) 636
TspDTI ATGAA 3 cut(s) 10, 333, 381
TspGWI ACGGA 1 cut(s) 219
TspRI CASTG 1 cut(s) 580
Tth111I GACNNNGTC 1 cut(s) 13
VneI GTGCAC 1 cut(s) 499
VpaK11BI GGWCC 1 cut(s) 338
XapI RAATTY 2 cut(s) 606, 650
XbaI TCTAGA 1 cut(s) 452
XcmI CCANNNNNNNNNTGG 1 cut(s) 380
XspI CTAG 1 cut(s) 453
ZraI GACGTC 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.