Rh1BG077400
ERF Family

Histidine phosphatase superfamily (branch 1)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0003894
Physical Location & Seq
Reverse (-)
11919344 .. 11927733
8390 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG077400.1

Sequence Viewer

Length: 759 bp
ATGGCGGAGACGACGTCGTTCATGAGAAACAAATACTGGGTATTGAGGCACGACAGGAGCATTCCAAATGAGAAAGGCCTCATTGTTTCCTCCATGGAAAATGGTACCCGCCCAGAATATCAATTGGCGCCACAAGGTGTTAATCAGGCTCAATTATGTTGCCTGTGCATGCAGTTACTTGAGGAAAGTTGCATACCACTTGCAGATGTTCGCATTTGCTACTCTCCGTTTTCGAGAACAACTCAGACTGCTCGAATTGTTGCATCTGTCTTGAACATTCAATTTGAGGGTCCTCAGTGTAAGGTGATGGAAACCCTCCGCGAACGCTTCTTTGGTCCTTCATTTGAGCTTGGGTCTCGTGATGAATACCATGAGATATATGGCACACTTGATGAGAAAGATCCTCTGATGAGACCAGAAGGCGGAGAAAGTGTTGATGATGTGGCATCTAGACTTGCAGAAGCTATGGTAACTATGGAGTCTCTATTTCAAGGTGATTTGGGAAGTTCTGCTTTCTTTGCATATGGCTCTGGAAACCACAATTTTAAGGGATTCCAATGGAAGTCTGGTTGGTGTACATATGCATTGCGAGCTCTATTTCAGCTCATGCAACAGACTCTTGCTCTCCTCTTTAGGTTGCAGTTTTCTCAGAATAAAGGTTTGCTTAGAGTAGTGGAAAGTGATAATGCGAGCCATTCAGTGAAGGTAAAGACTCATCTCTTGACTGTAGTGCCGCTGGCAATATCATTAGTTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
His_Phos_1

Protein Analysis

252

Amino Acids

28.41

Weight (kDa)

5.99

Isoelectric Point (pI)

37.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
His_Phos_1 PF00300 36 - 163 7.3e-11 Histidine phosphatase superfamily (branch 1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 17
Acc65I GGTACC 1 cut(s) 104
AccB1I GGYRCC 2 cut(s) 104, 127
AccII CGCG 1 cut(s) 321
AciI CCGC 5 cut(s) 5, 109, 319, 423, 734
AclWI GGATC 1 cut(s) 395
AcyI GRCGYC 2 cut(s) 14, 128
AdeI CACNNNGTG 1 cut(s) 137
AfaI GTAC 2 cut(s) 106, 577
AfiI CCNNNNNNNGG 1 cut(s) 422
AgsI TTSAA 3 cut(s) 274, 281, 491
AjuI GAANNNNNNNTTGG 2 cut(s) 315, 347
AluBI AGCT 4 cut(s) 349, 464, 593, 604
AluI AGCT 4 cut(s) 349, 464, 593, 604
Alw21I GWGCWC 1 cut(s) 595
Alw26I GTCTC 4 cut(s) 2, 360, 406, 486
AlwI GGATC 1 cut(s) 395
AoxI GGCC 1 cut(s) 76
Asp718I GGTACC 1 cut(s) 104
AspLEI GCGC 1 cut(s) 130
AspS9I GGNCC 2 cut(s) 290, 335
AsuHPI GGTGA 2 cut(s) 316, 506
AvaII GGWCC 2 cut(s) 290, 335
BanI GGYRCC 2 cut(s) 104, 127
BanII GRGCYC 1 cut(s) 595
BauI CACGAG 1 cut(s) 357
Bbv12I GWGCWC 1 cut(s) 595
BccI CCATC 1 cut(s) 301
BcoDI GTCTC 4 cut(s) 2, 360, 406, 486
BfaI CTAG 1 cut(s) 450
BfmI CTRYAG 1 cut(s) 726
BfoI RGCGCY 1 cut(s) 131
BisI GCNGC 1 cut(s) 734
BlsI GCNGC 1 cut(s) 735
Bme18I GGWCC 2 cut(s) 290, 335
BmgT120I GGNCC 2 cut(s) 290, 335
BmiI GGNNCC 3 cut(s) 106, 129, 291
BmrI ACTGGG 1 cut(s) 46
BmsI GCATC 2 cut(s) 272, 455
BmuI ACTGGG 1 cut(s) 46
BplI GAGNNNNNCTC 2 cut(s) 226, 258
BpuEI CTTGAG 1 cut(s) 200
BsaHI GRCGYC 2 cut(s) 14, 128
BsaI GGTCTC 2 cut(s) 360, 406
BsaJI CCNNGG 1 cut(s) 93
BsaXI ACNNNNNCTCC 3 cut(s) 29, 417, 447
Bsc4I CCNNNNNNNGG 1 cut(s) 422
Bse1I ACTGG 1 cut(s) 41
Bse3DI GCAATG 1 cut(s) 584
BseDI CCNNGG 1 cut(s) 93
BseLI CCNNNNNNNGG 1 cut(s) 422
BseMI GCAATG 1 cut(s) 584
BseMII CTCAG 3 cut(s) 257, 308, 662
BseNI ACTGG 1 cut(s) 41
BseRI GAGGAG 1 cut(s) 617
Bsh1236I CGCG 1 cut(s) 321
BshFI GGCC 1 cut(s) 78
BshNI GGYRCC 2 cut(s) 104, 127
BsiHKAI GWGCWC 1 cut(s) 595
BslI CCNNNNNNNGG 1 cut(s) 422
BsmAI GTCTC 4 cut(s) 2, 360, 406, 486
BsmBI CGTCTC 1 cut(s) 2
BsmI GAATGC 1 cut(s) 60
BsnI GGCC 1 cut(s) 78
Bso31I GGTCTC 2 cut(s) 360, 406
Bsp1286I GDGCHC 1 cut(s) 595
Bsp1407I TGTACA 1 cut(s) 575
Bsp143I GATC 1 cut(s) 400
Bsp19I CCATGG 1 cut(s) 93
BspACI CCGC 5 cut(s) 5, 109, 319, 423, 734
BspANI GGCC 1 cut(s) 78
BspCNI CTCAG 3 cut(s) 256, 307, 661
BspFNI CGCG 1 cut(s) 321
BspHI TCATGA 1 cut(s) 21
BspLI GGNNCC 3 cut(s) 106, 129, 291
BspPI GGATC 1 cut(s) 395
BspT107I GGYRCC 2 cut(s) 104, 127
BspTNI GGTCTC 2 cut(s) 360, 406
BsrDI GCAATG 1 cut(s) 584
BsrGI TGTACA 1 cut(s) 575
BsrI ACTGG 1 cut(s) 41
BssECI CCNNGG 1 cut(s) 93
BssMI GATC 1 cut(s) 400
BssNI GRCGYC 2 cut(s) 14, 128
BssSI CACGAG 1 cut(s) 357
BssT1I CCWWGG 1 cut(s) 93
Bst2BI CACGAG 1 cut(s) 357
Bst4CI ACNGT 1 cut(s) 727
BstACI GRCGYC 2 cut(s) 14, 128
BstAUI TGTACA 1 cut(s) 575
BstC8I GCNNGC 4 cut(s) 170, 591, 691, 738
BstDEI CTNAG 4 cut(s) 243, 294, 648, 665
BstDSI CCRYGG 1 cut(s) 93
BstFNI CGCG 1 cut(s) 321
BstH2I RGCGCY 1 cut(s) 131
BstHHI GCGC 1 cut(s) 130
BstKTI GATC 1 cut(s) 403
BstMAI GTCTC 4 cut(s) 2, 360, 406, 486
BstMBI GATC 1 cut(s) 400
BstMWI GCNNNNNNNGC 2 cut(s) 518, 590
BstNSI RCATGY 1 cut(s) 172
BstSFI CTRYAG 1 cut(s) 726
BstUI CGCG 1 cut(s) 321
BstX2I RGATCY 1 cut(s) 400
BstYI RGATCY 1 cut(s) 400
BsuRI GGCC 1 cut(s) 78
BtgI CCRYGG 1 cut(s) 93
BtsIMutI CAGTG 2 cut(s) 302, 705
Cac8I GCNNGC 4 cut(s) 170, 591, 691, 738
CciI TCATGA 1 cut(s) 21
CfoI GCGC 1 cut(s) 130
Cfr13I GGNCC 2 cut(s) 290, 335
Csp6I GTAC 2 cut(s) 105, 576
CviAII CATG 5 cut(s) 22, 94, 169, 371, 607
CviJI RGCY 8 cut(s) 78, 149, 349, 464, 528, 593, 604, 693
CviKI_1 RGCY 8 cut(s) 78, 149, 349, 464, 528, 593, 604, 693
CviQI GTAC 2 cut(s) 105, 576
DdeI CTNAG 4 cut(s) 243, 294, 648, 665
DinI GGCGCC 1 cut(s) 129
DpnI GATC 1 cut(s) 402
DpnII GATC 1 cut(s) 400
DraIII CACNNNGTG 1 cut(s) 137
EciI GGCGGA 2 cut(s) 20, 438
Ecl136II GAGCTC 1 cut(s) 593
Eco130I CCWWGG 1 cut(s) 93
Eco147I AGGCCT 1 cut(s) 78
Eco24I GRGCYC 1 cut(s) 595
Eco31I GGTCTC 2 cut(s) 360, 406
Eco47I GGWCC 2 cut(s) 290, 335
Eco53kI GAGCTC 1 cut(s) 593
EcoICRI GAGCTC 1 cut(s) 593
EcoO109I RGGNCCY 1 cut(s) 290
EcoT14I CCWWGG 1 cut(s) 93
EcoT22I ATGCAT 1 cut(s) 586
EcoT38I GRGCYC 1 cut(s) 595
EgeI GGCGCC 1 cut(s) 129
EheI GGCGCC 1 cut(s) 129
ErhI CCWWGG 1 cut(s) 93
Esp3I CGTCTC 1 cut(s) 2
FaeI CATG 5 cut(s) 25, 97, 172, 374, 610
FalI AAGNNNNNCTT 4 cut(s) 496, 528, 648, 680
FatI CATG 5 cut(s) 21, 93, 168, 370, 606
FauI CCCGC 1 cut(s) 116
FauNDI CATATG 2 cut(s) 523, 580
Fnu4HI GCNGC 1 cut(s) 734
FriOI GRGCYC 1 cut(s) 595
Fsp4HI GCNGC 1 cut(s) 734
FspBI CTAG 1 cut(s) 450
GlaI GCGC 1 cut(s) 129
GluI GCNGC 1 cut(s) 734
HaeII RGCGCY 1 cut(s) 131
HaeIII GGCC 1 cut(s) 78
HhaI GCGC 1 cut(s) 130
Hin1I GRCGYC 2 cut(s) 14, 128
Hin1II CATG 5 cut(s) 25, 97, 172, 374, 610
Hin6I GCGC 1 cut(s) 128
HinP1I GCGC 1 cut(s) 128
HincII GTYRAC 1 cut(s) 754
HindII GTYRAC 1 cut(s) 754
HinfI GANTC 4 cut(s) 479, 552, 616, 712
HpaI GTTAAC 1 cut(s) 754
HphI GGTGA 2 cut(s) 316, 506
Hpy166II GTNNAC 2 cut(s) 576, 754
Hpy188I TCNGA 3 cut(s) 246, 408, 651
Hpy188III TCNNGA 7 cut(s) 22, 234, 271, 359, 450, 531, 721
Hpy8I GTNNAC 2 cut(s) 576, 754
Hpy99I CGWCG 2 cut(s) 16, 19
HpyAV CCTTC 3 cut(s) 348, 413, 697
HpyCH4III ACNGT 1 cut(s) 727
HpyCH4IV ACGT 1 cut(s) 14
HpyF10VI GCNNNNNNNGC 2 cut(s) 518, 590
HpyF3I CTNAG 4 cut(s) 243, 294, 648, 665
HpySE526I ACGT 1 cut(s) 14
Hsp92I GRCGYC 2 cut(s) 14, 128
Hsp92II CATG 5 cut(s) 25, 97, 172, 374, 610
HspAI GCGC 1 cut(s) 128
KasI GGCGCC 1 cut(s) 127
KpnI GGTACC 1 cut(s) 108
KspAI GTTAAC 1 cut(s) 754
Kzo9I GATC 1 cut(s) 400
LmnI GCTCC 1 cut(s) 57
LpnPI CCDG 9 cut(s) 22, 40, 126, 131, 176, 429, 516, 552, 722
LweI GCATC 2 cut(s) 272, 455
MaeI CTAG 1 cut(s) 450
MaeII ACGT 1 cut(s) 14
MaeIII GTNAC 2 cut(s) 174, 469
MalI GATC 1 cut(s) 402
MboI GATC 1 cut(s) 400
MfeI CAATTG 1 cut(s) 122
MflI RGATCY 1 cut(s) 400
MhlI GDGCHC 1 cut(s) 595
MluCI AATT 5 cut(s) 122, 152, 255, 281, 541
Mly113I GGCGCC 1 cut(s) 128
MlyI GAGTC 3 cut(s) 488, 610, 706
MnlI CCTC 9 cut(s) 39, 89, 100, 175, 280, 303, 326, 414, 638
Mph1103I ATGCAT 1 cut(s) 586
MseI TTAA 3 cut(s) 141, 546, 753
MspA1I CMGCKG 1 cut(s) 736
MunI CAATTG 1 cut(s) 122
Mva1269I GAATGC 1 cut(s) 60
MvnI CGCG 1 cut(s) 321
MwoI GCNNNNNNNGC 2 cut(s) 518, 590
NarI GGCGCC 1 cut(s) 128
NcoI CCATGG 1 cut(s) 93
NdeI CATATG 2 cut(s) 523, 580
NdeII GATC 1 cut(s) 400
NlaIII CATG 5 cut(s) 25, 97, 172, 374, 610
NlaIV GGNNCC 3 cut(s) 106, 129, 291
NsiI ATGCAT 1 cut(s) 586
NspI RCATGY 1 cut(s) 172
PaeI GCATGC 1 cut(s) 172
PagI TCATGA 1 cut(s) 21
PceI AGGCCT 1 cut(s) 78
PctI GAATGC 1 cut(s) 60
PfeI GAWTC 1 cut(s) 552
PflFI GACNNNGTC 1 cut(s) 13
PkrI GCNGC 1 cut(s) 735
PleI GAGTC 3 cut(s) 487, 610, 706
PluTI GGCGCC 1 cut(s) 131
PpsI GAGTC 3 cut(s) 487, 610, 706
PpuMI RGGWCCY 1 cut(s) 290
Psp124BI GAGCTC 1 cut(s) 595
Psp5II RGGWCCY 1 cut(s) 290
PspN4I GGNNCC 3 cut(s) 106, 129, 291
PspPI GGNCC 2 cut(s) 290, 335
PspPPI RGGWCCY 1 cut(s) 290
PsuI RGATCY 1 cut(s) 400
PsyI GACNNNGTC 1 cut(s) 13
RsaI GTAC 2 cut(s) 106, 577
RsaNI GTAC 2 cut(s) 105, 576
SacI GAGCTC 1 cut(s) 595
SaqAI TTAA 3 cut(s) 141, 546, 753
SatI GCNGC 1 cut(s) 734
Sau3AI GATC 1 cut(s) 400
Sau96I GGNCC 2 cut(s) 290, 335
SchI GAGTC 3 cut(s) 488, 610, 706
SduI GDGCHC 1 cut(s) 595
SfaNI GCATC 2 cut(s) 272, 455
SfcI CTRYAG 1 cut(s) 726
SfoI GGCGCC 1 cut(s) 129
SinI GGWCC 2 cut(s) 290, 335
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
SphI GCATGC 1 cut(s) 172
Sse9I AATT 5 cut(s) 122, 152, 255, 281, 541
SseBI AGGCCT 1 cut(s) 78
SsiI CCGC 5 cut(s) 5, 109, 319, 423, 734
SspDI GGCGCC 1 cut(s) 127
SspMI CTAG 1 cut(s) 450
SstI GAGCTC 1 cut(s) 595
StuI AGGCCT 1 cut(s) 78
StyI CCWWGG 1 cut(s) 93
TaaI ACNGT 1 cut(s) 727
TaiI ACGT 1 cut(s) 17
TaqI TCGA 2 cut(s) 233, 253
TasI AATT 5 cut(s) 122, 152, 255, 281, 541
TatI WGTACW 1 cut(s) 575
TauI GCSGC 1 cut(s) 736
TfiI GAWTC 1 cut(s) 552
Tru1I TTAA 3 cut(s) 141, 546, 753
Tru9I TTAA 3 cut(s) 141, 546, 753
TscAI CASTG 2 cut(s) 302, 705
TspDTI ATGAA 3 cut(s) 10, 330, 378
TspGWI ACGGA 1 cut(s) 216
TspRI CASTG 2 cut(s) 302, 705
Tth111I GACNNNGTC 1 cut(s) 13
VpaK11BI GGWCC 2 cut(s) 290, 335
XbaI TCTAGA 1 cut(s) 449
XceI RCATGY 1 cut(s) 172
XcmI CCANNNNNNNNNTGG 2 cut(s) 377, 563
XspI CTAG 1 cut(s) 450
ZraI GACGTC 1 cut(s) 15
Zsp2I ATGCAT 1 cut(s) 586
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.