Rw1G007540
ERF Family

Histidine phosphatase superfamily (branch 1)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0003894
Physical Location & Seq
Forward (+)
15901577 .. 15905307
3731 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G007540.1

Sequence Viewer

Length: 696 bp
ATGGCGGAGACGACGTCGTTCATGAGAAACAAATACTGGGTATTGAGGCACGGCAGGAGCATTCCAAATGAGAGAGGCCTCATTGAAAATGGTACCCGCCCAGAATATCAATTGGCGCCACAAGGTGTTAATCAGGCTCAATTAGCTGGAGAACTGTTCAAATATTTCATCTTTTCCAGTTTTTTACTCGAGGAAAGTTGCATACCACTTGCAGATGTTCGCATTTGCTACTCTCCGTTTTCGAGAACAACTCAAACTGCTCGAATTGTTGCATCTGTCTTGAACATTCAATTTGTGGGTCATCAATGTAAGGTGATGGAAACCCTCCGCGAACGCTTCTTTGGTCCTTCGTTTGAGCTTGGGTCTCGTGATGAATACCATGAGATATATGGCACACTTGATGAAAGAGATCCTCTGATGAGACCAGAAGGCGGAGAAAGTGTTGATGATGTTGCATCTAGACTTGCAGAAGCTATGGTAACTATGGAGTCTCTATTTCAAGGGTGCACCATCTTAGTTGTTAGTCATGGCGATCCCCTACAAATCTTGCAAGCTATATTGAATGCTACTAAGCTAAACACCGAATCCAGTTATGACGACTTGGCATCAAGAATTCAAAATGTTAGAGCTCCTTCCATCTTGTCACAGCACAGGAAATTTAACCTGCAAACTGGGGAGCTCCGGGCAGTTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
His_Phos_1

Protein Analysis

231

Amino Acids

26.12

Weight (kDa)

5.6

Isoelectric Point (pI)

44.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
His_Phos_1 PF00300 13 - 191 7.5e-21 Histidine phosphatase superfamily (branch 1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 17
Acc36I ACCTGC 1 cut(s) 672
Acc65I GGTACC 1 cut(s) 92
AccB1I GGYRCC 2 cut(s) 92, 115
AccII CGCG 1 cut(s) 330
AciI CCGC 4 cut(s) 5, 97, 328, 432
AclWI GGATC 2 cut(s) 404, 527
AcsI RAATTY 2 cut(s) 612, 656
AcyI GRCGYC 2 cut(s) 14, 116
AdeI CACNNNGTG 1 cut(s) 125
AfaI GTAC 1 cut(s) 94
AfiI CCNNNNNNNGG 1 cut(s) 431
AgsI TTSAA 7 cut(s) 86, 160, 283, 290, 500, 562, 617
AjuI GAANNNNNNNTTGG 2 cut(s) 324, 356
AluBI AGCT 7 cut(s) 146, 358, 473, 554, 574, 629, 679
AluI AGCT 7 cut(s) 146, 358, 473, 554, 574, 629, 679
Alw21I GWGCWC 3 cut(s) 509, 631, 681
Alw26I GTCTC 4 cut(s) 2, 369, 415, 495
Alw44I GTGCAC 1 cut(s) 505
AlwI GGATC 2 cut(s) 404, 527
Ama87I CYCGRG 1 cut(s) 188
AoxI GGCC 1 cut(s) 76
ApaLI GTGCAC 1 cut(s) 505
ApoI RAATTY 2 cut(s) 612, 656
Asp718I GGTACC 1 cut(s) 92
AspLEI GCGC 1 cut(s) 118
AspS9I GGNCC 1 cut(s) 344
AsuC2I CCSGG 1 cut(s) 683
AsuHPI GGTGA 1 cut(s) 325
AvaI CYCGRG 1 cut(s) 188
AvaII GGWCC 1 cut(s) 344
BaeGI GKGCMC 1 cut(s) 509
BanI GGYRCC 2 cut(s) 92, 115
BanII GRGCYC 2 cut(s) 631, 681
BauI CACGAG 1 cut(s) 366
Bbv12I GWGCWC 3 cut(s) 509, 631, 681
BccI CCATC 3 cut(s) 310, 518, 644
BceAI ACGGC 1 cut(s) 67
BcnI CCSGG 1 cut(s) 683
BcoDI GTCTC 4 cut(s) 2, 369, 415, 495
BfaI CTAG 1 cut(s) 459
BfoI RGCGCY 1 cut(s) 119
BfuAI ACCTGC 1 cut(s) 672
Bme1390I CCNGG 1 cut(s) 683
Bme18I GGWCC 1 cut(s) 344
BmeT110I CYCGRG 1 cut(s) 188
BmgT120I GGNCC 1 cut(s) 344
BmiI GGNNCC 2 cut(s) 94, 117
BmrFI CCNGG 1 cut(s) 683
BmrI ACTGGG 2 cut(s) 46, 681
BmsI GCATC 3 cut(s) 281, 464, 614
BmuI ACTGGG 2 cut(s) 46, 681
BplI GAGNNNNNCTC 2 cut(s) 235, 267
BpmI CTGGAG 1 cut(s) 168
BpuMI CCSGG 1 cut(s) 683
BsaHI GRCGYC 2 cut(s) 14, 116
BsaI GGTCTC 2 cut(s) 369, 415
BsaXI ACNNNNNCTCC 3 cut(s) 29, 426, 456
Bsc4I CCNNNNNNNGG 1 cut(s) 431
Bse1I ACTGG 4 cut(s) 41, 177, 588, 676
BseLI CCNNNNNNNGG 1 cut(s) 431
BseNI ACTGG 4 cut(s) 41, 177, 588, 676
BseSI GKGCMC 1 cut(s) 509
Bsh1236I CGCG 1 cut(s) 330
BshFI GGCC 1 cut(s) 78
BshNI GGYRCC 2 cut(s) 92, 115
BsiHKAI GWGCWC 3 cut(s) 509, 631, 681
BsiHKCI CYCGRG 1 cut(s) 188
BsiSI CCGG 1 cut(s) 682
BslI CCNNNNNNNGG 1 cut(s) 431
BsmAI GTCTC 4 cut(s) 2, 369, 415, 495
BsmBI CGTCTC 1 cut(s) 2
BsmI GAATGC 2 cut(s) 60, 568
BsnI GGCC 1 cut(s) 78
Bso31I GGTCTC 2 cut(s) 369, 415
BsoBI CYCGRG 1 cut(s) 188
Bsp1286I GDGCHC 3 cut(s) 509, 631, 681
Bsp143I GATC 2 cut(s) 409, 532
BspACI CCGC 4 cut(s) 5, 97, 328, 432
BspANI GGCC 1 cut(s) 78
BspFNI CGCG 1 cut(s) 330
BspHI TCATGA 1 cut(s) 21
BspLI GGNNCC 2 cut(s) 94, 117
BspMI ACCTGC 1 cut(s) 672
BspPI GGATC 2 cut(s) 404, 527
BspT107I GGYRCC 2 cut(s) 92, 115
BspTNI GGTCTC 2 cut(s) 369, 415
BsrI ACTGG 4 cut(s) 41, 177, 588, 676
BssMI GATC 2 cut(s) 409, 532
BssNI GRCGYC 2 cut(s) 14, 116
BssSI CACGAG 1 cut(s) 366
Bst2BI CACGAG 1 cut(s) 366
Bst4CI ACNGT 1 cut(s) 156
BstACI GRCGYC 2 cut(s) 14, 116
BstC8I GCNNGC 1 cut(s) 552
BstDEI CTNAG 2 cut(s) 514, 570
BstFNI CGCG 1 cut(s) 330
BstH2I RGCGCY 1 cut(s) 119
BstHHI GCGC 1 cut(s) 118
BstKTI GATC 2 cut(s) 412, 535
BstMAI GTCTC 4 cut(s) 2, 369, 415, 495
BstMBI GATC 2 cut(s) 409, 532
BstMWI GCNNNNNNNGC 1 cut(s) 143
BstSCI CCNGG 1 cut(s) 681
BstSLI GKGCMC 1 cut(s) 509
BstUI CGCG 1 cut(s) 330
BstX2I RGATCY 1 cut(s) 409
BstYI RGATCY 1 cut(s) 409
BsuRI GGCC 1 cut(s) 78
BveI ACCTGC 1 cut(s) 672
Cac8I GCNNGC 1 cut(s) 552
CciI TCATGA 1 cut(s) 21
CfoI GCGC 1 cut(s) 118
Cfr13I GGNCC 1 cut(s) 344
Csp6I GTAC 1 cut(s) 93
CviAII CATG 3 cut(s) 22, 380, 527
CviJI RGCY 9 cut(s) 78, 137, 146, 358, 473, 554, 574, 629, 679
CviKI_1 RGCY 9 cut(s) 78, 137, 146, 358, 473, 554, 574, 629, 679
CviQI GTAC 1 cut(s) 93
DdeI CTNAG 2 cut(s) 514, 570
DinI GGCGCC 1 cut(s) 117
DpnI GATC 2 cut(s) 411, 534
DpnII GATC 2 cut(s) 409, 532
DraIII CACNNNGTG 1 cut(s) 125
EciI GGCGGA 2 cut(s) 20, 447
Ecl136II GAGCTC 2 cut(s) 629, 679
Eco147I AGGCCT 1 cut(s) 78
Eco24I GRGCYC 2 cut(s) 631, 681
Eco31I GGTCTC 2 cut(s) 369, 415
Eco47I GGWCC 1 cut(s) 344
Eco53kI GAGCTC 2 cut(s) 629, 679
Eco88I CYCGRG 1 cut(s) 188
EcoICRI GAGCTC 2 cut(s) 629, 679
EcoRI GAATTC 1 cut(s) 612
EcoT38I GRGCYC 2 cut(s) 631, 681
EgeI GGCGCC 1 cut(s) 117
EheI GGCGCC 1 cut(s) 117
Esp3I CGTCTC 1 cut(s) 2
FaeI CATG 3 cut(s) 25, 383, 530
FatI CATG 3 cut(s) 21, 379, 526
FauI CCCGC 1 cut(s) 104
FriOI GRGCYC 2 cut(s) 631, 681
FspBI CTAG 1 cut(s) 459
GlaI GCGC 1 cut(s) 117
GsuI CTGGAG 1 cut(s) 168
HaeII RGCGCY 1 cut(s) 119
HaeIII GGCC 1 cut(s) 78
HapII CCGG 1 cut(s) 682
HhaI GCGC 1 cut(s) 118
Hin1I GRCGYC 2 cut(s) 14, 116
Hin1II CATG 3 cut(s) 25, 383, 530
Hin6I GCGC 1 cut(s) 116
HinP1I GCGC 1 cut(s) 116
HinfI GANTC 2 cut(s) 488, 584
HpaII CCGG 1 cut(s) 682
HphI GGTGA 1 cut(s) 325
Hpy166II GTNNAC 1 cut(s) 507
Hpy188I TCNGA 1 cut(s) 417
Hpy188III TCNNGA 6 cut(s) 22, 243, 280, 368, 459, 609
Hpy8I GTNNAC 1 cut(s) 507
Hpy99I CGWCG 2 cut(s) 16, 19
HpyAV CCTTC 3 cut(s) 357, 422, 642
HpyCH4III ACNGT 1 cut(s) 156
HpyCH4IV ACGT 1 cut(s) 14
HpyCH4V TGCA 8 cut(s) 201, 212, 272, 455, 467, 507, 550, 667
HpyF10VI GCNNNNNNNGC 1 cut(s) 143
HpyF3I CTNAG 2 cut(s) 514, 570
HpySE526I ACGT 1 cut(s) 14
Hsp92I GRCGYC 2 cut(s) 14, 116
Hsp92II CATG 3 cut(s) 25, 383, 530
HspAI GCGC 1 cut(s) 116
KasI GGCGCC 1 cut(s) 115
KpnI GGTACC 1 cut(s) 96
Kzo9I GATC 2 cut(s) 409, 532
LmnI GCTCC 4 cut(s) 57, 634, 676, 684
LweI GCATC 3 cut(s) 281, 464, 614
MaeI CTAG 1 cut(s) 459
MaeII ACGT 1 cut(s) 14
MaeIII GTNAC 2 cut(s) 478, 642
MalI GATC 2 cut(s) 411, 534
MboI GATC 2 cut(s) 409, 532
MfeI CAATTG 1 cut(s) 110
MflI RGATCY 1 cut(s) 409
MhlI GDGCHC 3 cut(s) 509, 631, 681
MluCI AATT 6 cut(s) 110, 140, 264, 290, 612, 656
Mly113I GGCGCC 1 cut(s) 116
MlyI GAGTC 1 cut(s) 497
MnlI CCTC 6 cut(s) 39, 68, 89, 184, 335, 423
MseI TTAA 2 cut(s) 129, 660
MspI CCGG 1 cut(s) 682
MspR9I CCNGG 1 cut(s) 683
MunI CAATTG 1 cut(s) 110
Mva1269I GAATGC 2 cut(s) 60, 568
MvnI CGCG 1 cut(s) 330
MwoI GCNNNNNNNGC 1 cut(s) 143
NarI GGCGCC 1 cut(s) 116
NciI CCSGG 1 cut(s) 683
NdeII GATC 2 cut(s) 409, 532
NlaIII CATG 3 cut(s) 25, 383, 530
NlaIV GGNNCC 2 cut(s) 94, 117
NmuCI GTSAC 1 cut(s) 642
PaeR7I CTCGAG 1 cut(s) 188
PagI TCATGA 1 cut(s) 21
PceI AGGCCT 1 cut(s) 78
PctI GAATGC 2 cut(s) 60, 568
PfeI GAWTC 1 cut(s) 584
PflFI GACNNNGTC 1 cut(s) 13
PleI GAGTC 1 cut(s) 496
PluTI GGCGCC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 496
Psp124BI GAGCTC 2 cut(s) 631, 681
PspN4I GGNNCC 2 cut(s) 94, 117
PspPI GGNCC 1 cut(s) 344
PspXI VCTCGAGB 1 cut(s) 188
PsuI RGATCY 1 cut(s) 409
PsyI GACNNNGTC 1 cut(s) 13
RsaI GTAC 1 cut(s) 94
RsaNI GTAC 1 cut(s) 93
SacI GAGCTC 2 cut(s) 631, 681
SaqAI TTAA 2 cut(s) 129, 660
Sau3AI GATC 2 cut(s) 409, 532
Sau96I GGNCC 1 cut(s) 344
SchI GAGTC 1 cut(s) 497
ScrFI CCNGG 1 cut(s) 683
SduI GDGCHC 3 cut(s) 509, 631, 681
SfaNI GCATC 3 cut(s) 281, 464, 614
SfoI GGCGCC 1 cut(s) 117
Sfr274I CTCGAG 1 cut(s) 188
SinI GGWCC 1 cut(s) 344
SlaI CTCGAG 1 cut(s) 188
SmlI CTYRAG 1 cut(s) 188
SmoI CTYRAG 1 cut(s) 188
Sse9I AATT 6 cut(s) 110, 140, 264, 290, 612, 656
SseBI AGGCCT 1 cut(s) 78
SsiI CCGC 4 cut(s) 5, 97, 328, 432
SspDI GGCGCC 1 cut(s) 115
SspI AATATT 1 cut(s) 164
SspMI CTAG 1 cut(s) 459
SstI GAGCTC 2 cut(s) 631, 681
StuI AGGCCT 1 cut(s) 78
StyD4I CCNGG 1 cut(s) 681
TaaI ACNGT 1 cut(s) 156
TaiI ACGT 1 cut(s) 17
TaqI TCGA 3 cut(s) 189, 242, 262
TasI AATT 6 cut(s) 110, 140, 264, 290, 612, 656
TfiI GAWTC 1 cut(s) 584
Tru1I TTAA 2 cut(s) 129, 660
Tru9I TTAA 2 cut(s) 129, 660
TseFI GTSAC 1 cut(s) 642
Tsp45I GTSAC 1 cut(s) 642
TspDTI ATGAA 4 cut(s) 10, 157, 387, 417
TspGWI ACGGA 1 cut(s) 225
Tth111I GACNNNGTC 1 cut(s) 13
VneI GTGCAC 1 cut(s) 505
VpaK11BI GGWCC 1 cut(s) 344
XapI RAATTY 2 cut(s) 612, 656
XbaI TCTAGA 1 cut(s) 458
XcmI CCANNNNNNNNNTGG 1 cut(s) 386
XhoI CTCGAG 1 cut(s) 188
XspI CTAG 1 cut(s) 459
ZraI GACGTC 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.