Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0003894

Physical Location & Seq

Genomic Coordinates Forward (+)

17909253 .. 17911583

Gene Structure 2331 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G177600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGAGAGAAGAAGAGGTGTGTGATGTGGTGGTGGGTTTCGAGATGGCTGAGACGACGACGTTTCTGAGCAACAGATACTGGGTACTGAGGCACGGCAAGAGCATTCCGAATGAGAGAGGCATCATTGTTTCCTCCATGGAAAATGGTACGCGCCAAGAATATCAATTGGCGCCAGAAGGTGTGAGTCAGGCACAGTTGGCTGGGCAATTGTTCCAAAAGGTACTTGAGGAAAATCACATACCGATTGAAAATGTTTGCATTTGCTACTCTCCGTTTTCGAGAACAACTCACACTGCTCAAGTAGTTGCATCTGTCTTGAACGTTCAATTTGAGGGTGCTCAATGTAAGGTGATGGAAAATCTTCGTGAACGCTCCTTTGGTCCTTCATATGAGCTTCTGTCACATGATAAATATCACGATATATGGGCTCTTGATGAGAAAGATCCATTCACCAAGCCAGAAGGAGGAGAAAGTGTCAATGATGTTGCGTGTAGACTTGCAGAAGCTCTTGCAACTTTGGAGTCACAATTTCAAGGGTGCACCATCTTAGTTGTTAGTCATGGCGATACCCTACAAATCTTGCAGACAATCCTGAATGCTGCTAAGCTAAATGCAGGATCCAGTTACAATGACTTGGCATCGAGAATTCAAGCAGTTCAAACCCCTCCCGTCCTGTCACAGCACCGAAAATTTTCCCTGCTTACTGCAGAGCTCCGGGCAGTTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

His_Phos_1

Protein Analysis

243

Amino Acids

26.96

Weight (kDa)

5.19

Isoelectric Point (pI)

39.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003894)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38370
fragaria_vesca	FvH4_2g16540 FvH4_7g04340
malus_domestica	MD05G1133800.v1.1 MD10G1138800.v1.1
prunus_persica	Prupe.8G177600_v2.0.a1 Prupe.8G177600_v2.0.a1
pyrus_communis	pycom05g13060 pycom10g11800
rosa_chinensis	RchiOBHm_Chr1g0329291 RchiOBHm_Chr6g0280561
rosa_laevigata	RLG00000013054 RLG00000029903
rosa_multiflora	Rmu_co8146946.1_g000001 Rmu_co8448883.1_g000001 Rmu_sc0015818.1_g000007
rosa_roxburghii	Rroxscaffold_4G00321230 Rroxscaffold_7G00187990
rosa_rugosa	Rorug06G0132000 Rorug06G0132000 Rorug06G0132100 Rorug06G0132200 Rorug06G0132300 Rorug06G0132400.1
rosa_samantha	Rh1AG096800 Rh1BG077400 Rh1CG093600 Rh1CG093700 Rh6AG244600 Rh6BG247000 Rh6CG248600 Rh6DG239800
rosa_wichuraiana	Rw1G007540 Rw6G021180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	169
AccI	GTMKAC	1 cut(s)	493
AccII	CGCG	1 cut(s)	151
AclI	AACGTT	1 cut(s)	321
AclWI	GGATC	3 cut(s)	437, 612, 625
AcsI	RAATTY	2 cut(s)	645, 689
AcyI	GRCGYC	1 cut(s)	170
AfaI	GTAC	3 cut(s)	84, 148, 222
AfiI	CCNNNNNNNGG	1 cut(s)	464
AgsI	TTSAA	6 cut(s)	248, 319, 326, 533, 650, 659
AjuI	GAANNNNNNNTTGG	2 cut(s)	360, 392
AluBI	AGCT	4 cut(s)	394, 506, 607, 712
AluI	AGCT	4 cut(s)	394, 506, 607, 712
Alw21I	GWGCWC	3 cut(s)	340, 542, 714
Alw26I	GTCTC	1 cut(s)	44
Alw44I	GTGCAC	1 cut(s)	538
AlwI	GGATC	3 cut(s)	437, 612, 625
AlwNI	CAGNNNCTG	1 cut(s)	78
ApaLI	GTGCAC	1 cut(s)	538
ApeKI	GCWGC	1 cut(s)	599
ApoI	RAATTY	2 cut(s)	645, 689
Asp700I	GAANNNNTTC	2 cut(s)	360, 691
AspLEI	GCGC	2 cut(s)	153, 172
AspS9I	GGNCC	1 cut(s)	380
AsuC2I	CCSGG	1 cut(s)	716
AsuHPI	GGTGA	2 cut(s)	361, 442
AvaII	GGWCC	1 cut(s)	380
BaeGI	GKGCMC	1 cut(s)	542
BamHI	GGATCC	1 cut(s)	617
BanI	GGYRCC	1 cut(s)	169
BanII	GRGCYC	2 cut(s)	430, 714
Bbv12I	GWGCWC	3 cut(s)	340, 542, 714
BbvI	GCAGC	1 cut(s)	586
BccI	CCATC	3 cut(s)	37, 346, 551
BceAI	ACGGC	1 cut(s)	109
BcnI	CCSGG	1 cut(s)	716
BcoDI	GTCTC	1 cut(s)	44
BfmI	CTRYAG	1 cut(s)	705
BfoI	RGCGCY	1 cut(s)	173
BisI	GCNGC	1 cut(s)	600
BlpI	GCTNAGC	1 cut(s)	603
BlsI	GCNGC	1 cut(s)	601
Bme1390I	CCNGG	1 cut(s)	716
Bme18I	GGWCC	1 cut(s)	380
BmgT120I	GGNCC	1 cut(s)	380
BmiI	GGNNCC	2 cut(s)	171, 619
BmrFI	CCNGG	1 cut(s)	716
BmrI	ACTGGG	1 cut(s)	88
BmsI	GCATC	3 cut(s)	129, 317, 647
BmuI	ACTGGG	1 cut(s)	88
BplI	GAGNNNNNCTC	2 cut(s)	271, 303
Bpu1102I	GCTNAGC	1 cut(s)	603
BpuEI	CTTGAG	2 cut(s)	245, 282
BpuMI	CCSGG	1 cut(s)	716
BsaBI	GATNNNNATC	1 cut(s)	411
BsaHI	GRCGYC	1 cut(s)	170
BsaJI	CCNNGG	1 cut(s)	135
BsaXI	ACNNNNNCTCC	2 cut(s)	459, 489
Bsc4I	CCNNNNNNNGG	1 cut(s)	464
Bse1I	ACTGG	2 cut(s)	83, 621
Bse8I	GATNNNNATC	1 cut(s)	411
BseDI	CCNNGG	1 cut(s)	135
BseJI	GATNNNNATC	1 cut(s)	411
BseLI	CCNNNNNNNGG	1 cut(s)	464
BseMII	CTCAG	3 cut(s)	39, 56, 77
BseNI	ACTGG	2 cut(s)	83, 621
BseRI	GAGGAG	1 cut(s)	480
BseSI	GKGCMC	1 cut(s)	542
BseXI	GCAGC	1 cut(s)	586
BseYI	CCCAGC	1 cut(s)	200
Bsh1236I	CGCG	1 cut(s)	151
BshNI	GGYRCC	1 cut(s)	169
BsiHKAI	GWGCWC	3 cut(s)	340, 542, 714
BsiSI	CCGG	1 cut(s)	715
BslI	CCNNNNNNNGG	1 cut(s)	464
BsmAI	GTCTC	1 cut(s)	44
BsmBI	CGTCTC	1 cut(s)	44
BsmI	GAATGC	2 cut(s)	102, 601
Bsp1286I	GDGCHC	4 cut(s)	340, 430, 542, 714
Bsp143I	GATC	2 cut(s)	442, 617
Bsp1720I	GCTNAGC	1 cut(s)	603
Bsp19I	CCATGG	1 cut(s)	135
BspCNI	CTCAG	3 cut(s)	40, 57, 78
BspFNI	CGCG	1 cut(s)	151
BspLI	GGNNCC	2 cut(s)	171, 619
BspMAI	CTGCAG	1 cut(s)	709
BspPI	GGATC	3 cut(s)	437, 612, 625
BspT107I	GGYRCC	1 cut(s)	169
BsrI	ACTGG	2 cut(s)	83, 621
BssECI	CCNNGG	1 cut(s)	135
BssMI	GATC	2 cut(s)	442, 617
BssNI	GRCGYC	1 cut(s)	170
BssT1I	CCWWGG	1 cut(s)	135
Bst4CI	ACNGT	1 cut(s)	195
Bst6I	CTCTTC	1 cut(s)	6
BstACI	GRCGYC	1 cut(s)	170
BstDEI	CTNAG	5 cut(s)	48, 65, 86, 547, 603
BstDSI	CCRYGG	1 cut(s)	135
BstFNI	CGCG	1 cut(s)	151
BstH2I	RGCGCY	1 cut(s)	173
BstHHI	GCGC	2 cut(s)	153, 172
BstKTI	GATC	2 cut(s)	445, 620
BstMAI	GTCTC	1 cut(s)	44
BstMBI	GATC	2 cut(s)	442, 617
BstMWI	GCNNNNNNNGC	1 cut(s)	197
BstSCI	CCNGG	1 cut(s)	714
BstSFI	CTRYAG	1 cut(s)	705
BstSLI	GKGCMC	1 cut(s)	542
BstUI	CGCG	1 cut(s)	151
BstV1I	GCAGC	1 cut(s)	586
BstX2I	RGATCY	2 cut(s)	442, 617
BstYI	RGATCY	2 cut(s)	442, 617
BtgI	CCRYGG	1 cut(s)	135
BtsI	GCAGTG	1 cut(s)	291
BtsIMutI	CAGTG	1 cut(s)	291
CaiI	CAGNNNCTG	1 cut(s)	78
CfoI	GCGC	2 cut(s)	153, 172
Cfr13I	GGNCC	1 cut(s)	380
Csp6I	GTAC	3 cut(s)	83, 147, 221
CviAII	CATG	3 cut(s)	136, 404, 560
CviJI	RGCY	8 cut(s)	47, 200, 394, 428, 457, 506, 607, 712
CviKI_1	RGCY	8 cut(s)	47, 200, 394, 428, 457, 506, 607, 712
CviQI	GTAC	3 cut(s)	83, 147, 221
DdeI	CTNAG	5 cut(s)	48, 65, 86, 547, 603
DinI	GGCGCC	1 cut(s)	171
DpnI	GATC	2 cut(s)	444, 619
DpnII	GATC	2 cut(s)	442, 617
Eam1104I	CTCTTC	1 cut(s)	6
EarI	CTCTTC	1 cut(s)	6
Ecl136II	GAGCTC	1 cut(s)	712
Eco130I	CCWWGG	1 cut(s)	135
Eco24I	GRGCYC	2 cut(s)	430, 714
Eco47I	GGWCC	1 cut(s)	380
Eco53kI	GAGCTC	1 cut(s)	712
EcoICRI	GAGCTC	1 cut(s)	712
EcoRI	GAATTC	1 cut(s)	645
EcoT14I	CCWWGG	1 cut(s)	135
EcoT38I	GRGCYC	2 cut(s)	430, 714
EgeI	GGCGCC	1 cut(s)	171
EheI	GGCGCC	1 cut(s)	171
ErhI	CCWWGG	1 cut(s)	135
Esp3I	CGTCTC	1 cut(s)	44
FaeI	CATG	3 cut(s)	139, 407, 563
FatI	CATG	3 cut(s)	135, 403, 559
FauNDI	CATATG	1 cut(s)	388
FblI	GTMKAC	1 cut(s)	493
Fnu4HI	GCNGC	1 cut(s)	600
FriOI	GRGCYC	2 cut(s)	430, 714
Fsp4HI	GCNGC	1 cut(s)	600
GlaI	GCGC	2 cut(s)	152, 171
GluI	GCNGC	1 cut(s)	600
GsaI	CCCAGC	1 cut(s)	204
HaeII	RGCGCY	1 cut(s)	173
HapII	CCGG	1 cut(s)	715
HhaI	GCGC	2 cut(s)	153, 172
Hin1I	GRCGYC	1 cut(s)	170
Hin1II	CATG	3 cut(s)	139, 407, 563
Hin6I	GCGC	2 cut(s)	151, 170
HinP1I	GCGC	2 cut(s)	151, 170
HinfI	GANTC	2 cut(s)	184, 521
HpaII	CCGG	1 cut(s)	715
HphI	GGTGA	2 cut(s)	361, 442
Hpy166II	GTNNAC	3 cut(s)	368, 494, 540
Hpy188I	TCNGA	2 cut(s)	66, 108
Hpy188III	TCNNGA	8 cut(s)	40, 279, 316, 365, 416, 431, 592, 642
Hpy8I	GTNNAC	3 cut(s)	368, 494, 540
Hpy99I	CGWCG	2 cut(s)	58, 61
HpyAV	CCTTC	3 cut(s)	170, 393, 455
HpyCH4III	ACNGT	1 cut(s)	195
HpyCH4IV	ACGT	2 cut(s)	59, 321
HpyCH4V	TGCA	8 cut(s)	258, 308, 500, 512, 540, 583, 614, 707
HpyF10VI	GCNNNNNNNGC	1 cut(s)	197
HpyF3I	CTNAG	5 cut(s)	48, 65, 86, 547, 603
HpySE526I	ACGT	2 cut(s)	59, 321
Hsp92I	GRCGYC	1 cut(s)	170
Hsp92II	CATG	3 cut(s)	139, 407, 563
HspAI	GCGC	2 cut(s)	151, 170
KasI	GGCGCC	1 cut(s)	169
Kzo9I	GATC	2 cut(s)	442, 617
LmnI	GCTCC	2 cut(s)	377, 717
Lsp1109I	GCAGC	1 cut(s)	586
LweI	GCATC	3 cut(s)	129, 317, 647
MaeII	ACGT	2 cut(s)	59, 321
MaeIII	GTNAC	4 cut(s)	399, 522, 623, 675
MalI	GATC	2 cut(s)	444, 619
MboI	GATC	2 cut(s)	442, 617
MboII	GAAGA	3 cut(s)	20, 23, 353
MfeI	CAATTG	2 cut(s)	164, 206
MflI	RGATCY	2 cut(s)	442, 617
MhlI	GDGCHC	4 cut(s)	340, 430, 542, 714
MluCI	AATT	6 cut(s)	164, 206, 326, 527, 645, 689
Mly113I	GGCGCC	1 cut(s)	170
MlyI	GAGTC	2 cut(s)	193, 530
MnlI	CCTC	8 cut(s)	7, 81, 110, 142, 220, 325, 458, 675
MroXI	GAANNNNTTC	2 cut(s)	360, 691
MspI	CCGG	1 cut(s)	715
MspR9I	CCNGG	1 cut(s)	716
MunI	CAATTG	2 cut(s)	164, 206
Mva1269I	GAATGC	2 cut(s)	102, 601
MvnI	CGCG	1 cut(s)	151
MwoI	GCNNNNNNNGC	1 cut(s)	197
NarI	GGCGCC	1 cut(s)	170
NciI	CCSGG	1 cut(s)	716
NcoI	CCATGG	1 cut(s)	135
NdeI	CATATG	1 cut(s)	388
NdeII	GATC	2 cut(s)	442, 617
NlaIII	CATG	3 cut(s)	139, 407, 563
NlaIV	GGNNCC	2 cut(s)	171, 619
NmuCI	GTSAC	3 cut(s)	399, 522, 675
PctI	GAATGC	2 cut(s)	102, 601
PdmI	GAANNNNTTC	2 cut(s)	360, 691
PkrI	GCNGC	1 cut(s)	601
PleI	GAGTC	2 cut(s)	192, 529
PluTI	GGCGCC	1 cut(s)	173
PpsI	GAGTC	2 cut(s)	192, 529
Psp124BI	GAGCTC	1 cut(s)	714
Psp1406I	AACGTT	1 cut(s)	321
PspFI	CCCAGC	1 cut(s)	200
PspN4I	GGNNCC	2 cut(s)	171, 619
PspPI	GGNCC	1 cut(s)	380
PstI	CTGCAG	1 cut(s)	709
PstNI	CAGNNNCTG	1 cut(s)	78
PsuI	RGATCY	2 cut(s)	442, 617
RsaI	GTAC	3 cut(s)	84, 148, 222
RsaNI	GTAC	3 cut(s)	83, 147, 221
SacI	GAGCTC	1 cut(s)	714
SatI	GCNGC	1 cut(s)	600
Sau3AI	GATC	2 cut(s)	442, 617
Sau96I	GGNCC	1 cut(s)	380
SchI	GAGTC	2 cut(s)	193, 530
ScrFI	CCNGG	1 cut(s)	716
SduI	GDGCHC	4 cut(s)	340, 430, 542, 714
SfaNI	GCATC	3 cut(s)	129, 317, 647
SfcI	CTRYAG	1 cut(s)	705
SfoI	GGCGCC	1 cut(s)	171
SinI	GGWCC	1 cut(s)	380
SmlI	CTYRAG	2 cut(s)	224, 297
SmoI	CTYRAG	2 cut(s)	224, 297
Sse9I	AATT	6 cut(s)	164, 206, 326, 527, 645, 689
SspDI	GGCGCC	1 cut(s)	169
SstI	GAGCTC	1 cut(s)	714
StyD4I	CCNGG	1 cut(s)	714
StyI	CCWWGG	1 cut(s)	135
TaaI	ACNGT	1 cut(s)	195
TaiI	ACGT	2 cut(s)	62, 324
TaqI	TCGA	3 cut(s)	39, 278, 641
TasI	AATT	6 cut(s)	164, 206, 326, 527, 645, 689
TscAI	CASTG	1 cut(s)	298
TseFI	GTSAC	3 cut(s)	399, 522, 675
TseI	GCWGC	1 cut(s)	599
Tsp45I	GTSAC	3 cut(s)	399, 522, 675
TspDTI	ATGAA	1 cut(s)	375
TspGWI	ACGGA	1 cut(s)	261
TspRI	CASTG	1 cut(s)	298
VneI	GTGCAC	1 cut(s)	538
VpaK11BI	GGWCC	1 cut(s)	380
XapI	RAATTY	2 cut(s)	645, 689
XmiI	GTMKAC	1 cut(s)	493
XmnI	GAANNNNTTC	2 cut(s)	360, 691

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.