Rroxscaffold_7G00187990
ERF Family

Histidine phosphatase superfamily (branch 1)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0003894
Physical Location & Seq
Reverse (-)
27421993 .. 27424782
2790 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_7G00187990.1

Sequence Viewer

Length: 378 bp
ATGGAAAACCTCCGCGAACGCTTCTTTGGTCCTTCATATGAGCTCATGTCACATGATAAATATCACGAAGTATGGGCTATTGATGAGAAAGATCCACTCATGAAGCCAGAAGGAGGAGAAAGTGTCGATGATGTTGCATCTAGACTTGTAGAGGCTATTGCAAACATAGAATCACAATTTCAAGGGTGCACAATCTTAGTTGTTAGTCATGGCGATACCCTACAAATCTTGCAGACAATATTGAATGCTGCTAAGCCTGATGCAGCATCCACCTATGATGACTTGACTTCAAGAATGCAAACAGTAAGAACCCCTTCCATCTTGTCAGAGCACCGGAAATTTTCCTTGCTTACTGCAGAGCTTCGGGCAGTTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
His_Phos_1

Protein Analysis

125

Amino Acids

14.05

Weight (kDa)

4.87

Isoelectric Point (pI)

45.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
His_Phos_1 PF00300 2 - 88 5.1e-12 Histidine phosphatase superfamily (branch 1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 15
AciI CCGC 1 cut(s) 13
AclWI GGATC 1 cut(s) 86
AcsI RAATTY 1 cut(s) 338
AfiI CCNNNNNNNGG 1 cut(s) 113
AgsI TTSAA 3 cut(s) 182, 244, 291
AjuI GAANNNNNNNTTGG 2 cut(s) 9, 41
AluBI AGCT 2 cut(s) 43, 361
AluI AGCT 2 cut(s) 43, 361
Alw21I GWGCWC 3 cut(s) 45, 191, 333
Alw44I GTGCAC 1 cut(s) 187
AlwI GGATC 1 cut(s) 86
ApaLI GTGCAC 1 cut(s) 187
ApeKI GCWGC 2 cut(s) 248, 263
ApoI RAATTY 1 cut(s) 338
Asp700I GAANNNNTTC 1 cut(s) 313
AspS9I GGNCC 1 cut(s) 29
AvaII GGWCC 1 cut(s) 29
BaeGI GKGCMC 1 cut(s) 191
BanII GRGCYC 1 cut(s) 45
Bbv12I GWGCWC 3 cut(s) 45, 191, 333
BbvI GCAGC 2 cut(s) 235, 275
BccI CCATC 1 cut(s) 326
BcgI CGANNNNNNTGC 2 cut(s) 116, 150
BfaI CTAG 1 cut(s) 141
BfmI CTRYAG 1 cut(s) 354
BisI GCNGC 2 cut(s) 249, 264
BlpI GCTNAGC 1 cut(s) 252
BlsI GCNGC 2 cut(s) 250, 265
Bme18I GGWCC 1 cut(s) 29
BmgT120I GGNCC 1 cut(s) 29
BmsI GCATC 3 cut(s) 146, 250, 275
Bpu1102I GCTNAGC 1 cut(s) 252
BsaBI GATNNNNATC 1 cut(s) 60
BsaWI WCCGGW 1 cut(s) 333
BsaXI ACNNNNNCTCC 2 cut(s) 108, 138
Bsc4I CCNNNNNNNGG 1 cut(s) 113
Bse8I GATNNNNATC 1 cut(s) 60
BseGI GGATG 1 cut(s) 266
BseJI GATNNNNATC 1 cut(s) 60
BseLI CCNNNNNNNGG 1 cut(s) 113
BseRI GAGGAG 1 cut(s) 129
BseSI GKGCMC 1 cut(s) 191
BseXI GCAGC 2 cut(s) 235, 275
Bsh1236I CGCG 1 cut(s) 15
BsiHKAI GWGCWC 3 cut(s) 45, 191, 333
BsiSI CCGG 1 cut(s) 334
BslI CCNNNNNNNGG 1 cut(s) 113
BsmI GAATGC 2 cut(s) 250, 300
Bsp1286I GDGCHC 3 cut(s) 45, 191, 333
Bsp143I GATC 1 cut(s) 91
Bsp1720I GCTNAGC 1 cut(s) 252
BspACI CCGC 1 cut(s) 13
BspFNI CGCG 1 cut(s) 15
BspHI TCATGA 1 cut(s) 99
BspMAI CTGCAG 1 cut(s) 358
BspPI GGATC 1 cut(s) 86
BssMI GATC 1 cut(s) 91
Bst4CI ACNGT 1 cut(s) 304
BstDEI CTNAG 2 cut(s) 196, 252
BstF5I GGATG 1 cut(s) 266
BstFNI CGCG 1 cut(s) 15
BstKTI GATC 1 cut(s) 94
BstMBI GATC 1 cut(s) 91
BstSFI CTRYAG 1 cut(s) 354
BstSLI GKGCMC 1 cut(s) 191
BstUI CGCG 1 cut(s) 15
BstV1I GCAGC 2 cut(s) 235, 275
BstX2I RGATCY 1 cut(s) 91
BstYI RGATCY 1 cut(s) 91
BtsCI GGATG 1 cut(s) 266
CciI TCATGA 1 cut(s) 99
Cfr13I GGNCC 1 cut(s) 29
CviAII CATG 4 cut(s) 46, 53, 100, 209
CviJI RGCY 6 cut(s) 43, 77, 106, 155, 256, 361
CviKI_1 RGCY 6 cut(s) 43, 77, 106, 155, 256, 361
DdeI CTNAG 2 cut(s) 196, 252
DpnI GATC 1 cut(s) 93
DpnII GATC 1 cut(s) 91
Ecl136II GAGCTC 1 cut(s) 43
Eco24I GRGCYC 1 cut(s) 45
Eco47I GGWCC 1 cut(s) 29
Eco53kI GAGCTC 1 cut(s) 43
EcoICRI GAGCTC 1 cut(s) 43
EcoT38I GRGCYC 1 cut(s) 45
FaeI CATG 4 cut(s) 49, 56, 103, 212
FalI AAGNNNNNCTT 2 cut(s) 298, 330
FatI CATG 4 cut(s) 45, 52, 99, 208
FauNDI CATATG 1 cut(s) 37
Fnu4HI GCNGC 2 cut(s) 249, 264
FokI GGATG 1 cut(s) 253
FriOI GRGCYC 1 cut(s) 45
Fsp4HI GCNGC 2 cut(s) 249, 264
FspBI CTAG 1 cut(s) 141
GluI GCNGC 2 cut(s) 249, 264
HapII CCGG 1 cut(s) 334
Hin1II CATG 4 cut(s) 49, 56, 103, 212
HinfI GANTC 1 cut(s) 170
HpaII CCGG 1 cut(s) 334
Hpy166II GTNNAC 1 cut(s) 189
Hpy188I TCNGA 1 cut(s) 328
Hpy188III TCNNGA 4 cut(s) 65, 100, 141, 291
Hpy8I GTNNAC 1 cut(s) 189
HpyAV CCTTC 3 cut(s) 42, 104, 324
HpyCH4III ACNGT 1 cut(s) 304
HpyCH4V TGCA 7 cut(s) 137, 161, 189, 232, 263, 298, 356
HpyF3I CTNAG 2 cut(s) 196, 252
Hsp92II CATG 4 cut(s) 49, 56, 103, 212
Kzo9I GATC 1 cut(s) 91
LpnPI CCDG 3 cut(s) 120, 270, 347
Lsp1109I GCAGC 2 cut(s) 235, 275
LweI GCATC 3 cut(s) 146, 250, 275
MaeI CTAG 1 cut(s) 141
MaeIII GTNAC 1 cut(s) 48
MalI GATC 1 cut(s) 93
MboI GATC 1 cut(s) 91
MflI RGATCY 1 cut(s) 91
MhlI GDGCHC 3 cut(s) 45, 191, 333
MluCI AATT 2 cut(s) 176, 338
MnlI CCTC 3 cut(s) 20, 107, 145
MroXI GAANNNNTTC 1 cut(s) 313
MspI CCGG 1 cut(s) 334
Mva1269I GAATGC 2 cut(s) 250, 300
MvnI CGCG 1 cut(s) 15
NdeI CATATG 1 cut(s) 37
NdeII GATC 1 cut(s) 91
NlaIII CATG 4 cut(s) 49, 56, 103, 212
NmuCI GTSAC 1 cut(s) 48
PagI TCATGA 1 cut(s) 99
PctI GAATGC 2 cut(s) 250, 300
PdmI GAANNNNTTC 1 cut(s) 313
PfeI GAWTC 1 cut(s) 170
PkrI GCNGC 2 cut(s) 250, 265
Psp124BI GAGCTC 1 cut(s) 45
PspPI GGNCC 1 cut(s) 29
PstI CTGCAG 1 cut(s) 358
PsuI RGATCY 1 cut(s) 91
SacI GAGCTC 1 cut(s) 45
SatI GCNGC 2 cut(s) 249, 264
Sau3AI GATC 1 cut(s) 91
Sau96I GGNCC 1 cut(s) 29
SduI GDGCHC 3 cut(s) 45, 191, 333
SetI ASST 4 cut(s) 12, 45, 275, 363
SfaNI GCATC 3 cut(s) 146, 250, 275
SfcI CTRYAG 1 cut(s) 354
SinI GGWCC 1 cut(s) 29
Sse9I AATT 2 cut(s) 176, 338
SsiI CCGC 1 cut(s) 13
SspI AATATT 1 cut(s) 240
SspMI CTAG 1 cut(s) 141
SstI GAGCTC 1 cut(s) 45
TaaI ACNGT 1 cut(s) 304
TaqI TCGA 1 cut(s) 126
TasI AATT 2 cut(s) 176, 338
TfiI GAWTC 1 cut(s) 170
TseFI GTSAC 1 cut(s) 48
TseI GCWGC 2 cut(s) 248, 263
Tsp45I GTSAC 1 cut(s) 48
TspDTI ATGAA 2 cut(s) 24, 116
VneI GTGCAC 1 cut(s) 187
VpaK11BI GGWCC 1 cut(s) 29
XapI RAATTY 1 cut(s) 338
XbaI TCTAGA 1 cut(s) 140
XmnI GAANNNNTTC 1 cut(s) 313
XspI CTAG 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.