Rh6AG244600
ERF Family

Histidine phosphatase superfamily (branch 1)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0003894
Physical Location & Seq
Forward (+)
43337549 .. 43340126
2578 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG244600.1

Sequence Viewer

Length: 528 bp
ATGCGGAGGAGTTGGATTGGGGCGTTGGAAATGGCGGAGACGACGTCGTTTGCGAGGAACAGATACTGGGTACTGAGGCACGGCAAGAGCATTCCGAATGAGAAAGGCCTAATCGTTTCCTCCATGGAAAATGGGACGCGCCCAGAGTATCAATTGGCGCCGGAAGGTGTTGATCAAGCAAAGCGGGCTGGAGAGTTGTTCCGAAAGGTACTTGAGGAAAATAGCATGCCAATTGAAAATGTTCACATTTGCTATTCTCCCTTTTCGAGAACAAGACAGACTGCTGAAGTTGTTGCATCTGTCTTGAATATTCAGTTTGAGGGTGCTCAATGTAAGGTGATGGAAAACCTCCGCGAACGCTTCTTTGGTCCTTCATATGAGCTCATGTCACATGATAAATATCACGAAGTATGGGCTATTGATGAGAAAGATCCACTCATGAAGCCAGAAGGAGGAGAAAGTGTCGATGATGTTGCATCTAGACTTGTAGAGGCTATTGCAAACATAGAATCACAATTTCAAGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
His_Phos_1

Protein Analysis

175

Amino Acids

19.97

Weight (kDa)

5.33

Isoelectric Point (pI)

47.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
His_Phos_1 PF00300 23 - 174 3.9e-17 Histidine phosphatase superfamily (branch 1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 47
AccB1I GGYRCC 1 cut(s) 157
AccII CGCG 2 cut(s) 139, 354
AciI CCGC 4 cut(s) 4, 35, 184, 352
AclWI GGATC 1 cut(s) 425
AcuI CTGAAG 1 cut(s) 306
AcyI GRCGYC 2 cut(s) 44, 158
AfaI GTAC 2 cut(s) 72, 210
AfiI CCNNNNNNNGG 1 cut(s) 452
AgsI TTSAA 3 cut(s) 236, 307, 521
AjuI GAANNNNNNNTTGG 2 cut(s) 348, 380
AluBI AGCT 1 cut(s) 382
AluI AGCT 1 cut(s) 382
Alw21I GWGCWC 2 cut(s) 328, 384
Alw26I GTCTC 1 cut(s) 32
AlwI GGATC 1 cut(s) 425
AlwNI CAGNNNCTG 1 cut(s) 66
AoxI GGCC 1 cut(s) 106
Asp700I GAANNNNTTC 1 cut(s) 240
AspLEI GCGC 2 cut(s) 141, 160
AspS9I GGNCC 1 cut(s) 368
AsuHPI GGTGA 1 cut(s) 349
AvaII GGWCC 1 cut(s) 368
BanI GGYRCC 1 cut(s) 157
BanII GRGCYC 1 cut(s) 384
Bbv12I GWGCWC 2 cut(s) 328, 384
BccI CCATC 1 cut(s) 334
BceAI ACGGC 1 cut(s) 97
BcgI CGANNNNNNTGC 2 cut(s) 455, 489
BclI TGATCA 1 cut(s) 172
BcoDI GTCTC 1 cut(s) 32
BfaI CTAG 1 cut(s) 480
BfoI RGCGCY 1 cut(s) 161
Bme18I GGWCC 1 cut(s) 368
BmgT120I GGNCC 1 cut(s) 368
BmiI GGNNCC 1 cut(s) 159
BmrI ACTGGG 1 cut(s) 76
BmsI GCATC 2 cut(s) 305, 485
BmuI ACTGGG 1 cut(s) 76
BpmI CTGGAG 1 cut(s) 210
BpuEI CTTGAG 1 cut(s) 233
BsaBI GATNNNNATC 1 cut(s) 399
BsaHI GRCGYC 2 cut(s) 44, 158
BsaJI CCNNGG 1 cut(s) 123
BsaXI ACNNNNNCTCC 4 cut(s) 29, 59, 447, 477
Bsc4I CCNNNNNNNGG 1 cut(s) 452
Bse1I ACTGG 1 cut(s) 71
Bse8I GATNNNNATC 1 cut(s) 399
BseDI CCNNGG 1 cut(s) 123
BseJI GATNNNNATC 1 cut(s) 399
BseLI CCNNNNNNNGG 1 cut(s) 452
BseMII CTCAG 1 cut(s) 65
BseNI ACTGG 1 cut(s) 71
BseRI GAGGAG 2 cut(s) 22, 468
Bsh1236I CGCG 2 cut(s) 139, 354
BshFI GGCC 1 cut(s) 108
BshNI GGYRCC 1 cut(s) 157
BsiHKAI GWGCWC 2 cut(s) 328, 384
BsiSI CCGG 1 cut(s) 161
BslFI GGGAC 1 cut(s) 148
BslI CCNNNNNNNGG 1 cut(s) 452
BsmAI GTCTC 1 cut(s) 32
BsmBI CGTCTC 1 cut(s) 32
BsmFI GGGAC 1 cut(s) 148
BsmI GAATGC 1 cut(s) 90
BsnI GGCC 1 cut(s) 108
Bsp1286I GDGCHC 2 cut(s) 328, 384
Bsp143I GATC 2 cut(s) 172, 430
Bsp19I CCATGG 1 cut(s) 123
BspACI CCGC 4 cut(s) 4, 35, 184, 352
BspANI GGCC 1 cut(s) 108
BspCNI CTCAG 1 cut(s) 66
BspFNI CGCG 2 cut(s) 139, 354
BspHI TCATGA 1 cut(s) 438
BspLI GGNNCC 1 cut(s) 159
BspPI GGATC 1 cut(s) 425
BspT107I GGYRCC 1 cut(s) 157
BsrI ACTGG 1 cut(s) 71
BssECI CCNNGG 1 cut(s) 123
BssMI GATC 2 cut(s) 172, 430
BssNI GRCGYC 2 cut(s) 44, 158
BssT1I CCWWGG 1 cut(s) 123
BstACI GRCGYC 2 cut(s) 44, 158
BstC8I GCNNGC 2 cut(s) 186, 227
BstDEI CTNAG 1 cut(s) 74
BstDSI CCRYGG 1 cut(s) 123
BstFNI CGCG 2 cut(s) 139, 354
BstH2I RGCGCY 1 cut(s) 161
BstHHI GCGC 2 cut(s) 141, 160
BstKTI GATC 2 cut(s) 175, 433
BstMAI GTCTC 1 cut(s) 32
BstMBI GATC 2 cut(s) 172, 430
BstMWI GCNNNNNNNGC 1 cut(s) 185
BstNSI RCATGY 1 cut(s) 229
BstUI CGCG 2 cut(s) 139, 354
BstX2I RGATCY 1 cut(s) 430
BstYI RGATCY 1 cut(s) 430
BsuRI GGCC 1 cut(s) 108
BtgI CCRYGG 1 cut(s) 123
Cac8I GCNNGC 2 cut(s) 186, 227
CaiI CAGNNNCTG 1 cut(s) 66
CciI TCATGA 1 cut(s) 438
CfoI GCGC 2 cut(s) 141, 160
Cfr13I GGNCC 1 cut(s) 368
CseI GACGC 1 cut(s) 145
Csp6I GTAC 2 cut(s) 71, 209
CviAII CATG 5 cut(s) 124, 226, 385, 392, 439
CviJI RGCY 6 cut(s) 108, 188, 382, 416, 445, 494
CviKI_1 RGCY 6 cut(s) 108, 188, 382, 416, 445, 494
CviQI GTAC 2 cut(s) 71, 209
DdeI CTNAG 1 cut(s) 74
DinI GGCGCC 1 cut(s) 159
DpnI GATC 2 cut(s) 174, 432
DpnII GATC 2 cut(s) 172, 430
EciI GGCGGA 1 cut(s) 50
Ecl136II GAGCTC 1 cut(s) 382
Eco130I CCWWGG 1 cut(s) 123
Eco147I AGGCCT 1 cut(s) 108
Eco24I GRGCYC 1 cut(s) 384
Eco47I GGWCC 1 cut(s) 368
Eco53kI GAGCTC 1 cut(s) 382
Eco57I CTGAAG 1 cut(s) 306
EcoICRI GAGCTC 1 cut(s) 382
EcoT14I CCWWGG 1 cut(s) 123
EcoT38I GRGCYC 1 cut(s) 384
EgeI GGCGCC 1 cut(s) 159
EheI GGCGCC 1 cut(s) 159
ErhI CCWWGG 1 cut(s) 123
Esp3I CGTCTC 1 cut(s) 32
FaeI CATG 5 cut(s) 127, 229, 388, 395, 442
FaiI YATR 9 cut(s) 125, 227, 376, 378, 386, 393, 412, 440, 506
FaqI GGGAC 1 cut(s) 148
FatI CATG 5 cut(s) 123, 225, 384, 391, 438
FauI CCCGC 1 cut(s) 177
FauNDI CATATG 1 cut(s) 376
FbaI TGATCA 1 cut(s) 172
FriOI GRGCYC 1 cut(s) 384
FspBI CTAG 1 cut(s) 480
GlaI GCGC 2 cut(s) 140, 159
GsuI CTGGAG 1 cut(s) 210
HaeII RGCGCY 1 cut(s) 161
HaeIII GGCC 1 cut(s) 108
HapII CCGG 1 cut(s) 161
HgaI GACGC 1 cut(s) 145
HhaI GCGC 2 cut(s) 141, 160
Hin1I GRCGYC 2 cut(s) 44, 158
Hin1II CATG 5 cut(s) 127, 229, 388, 395, 442
Hin6I GCGC 2 cut(s) 139, 158
HinP1I GCGC 2 cut(s) 139, 158
HinfI GANTC 1 cut(s) 509
HpaII CCGG 1 cut(s) 161
HphI GGTGA 1 cut(s) 349
Hpy166II GTNNAC 1 cut(s) 244
Hpy188I TCNGA 2 cut(s) 96, 203
Hpy188III TCNNGA 5 cut(s) 267, 304, 404, 439, 480
Hpy8I GTNNAC 1 cut(s) 244
Hpy99I CGWCG 2 cut(s) 46, 49
HpyAV CCTTC 3 cut(s) 158, 381, 443
HpyCH4IV ACGT 1 cut(s) 44
HpyCH4V TGCA 3 cut(s) 296, 476, 500
HpyF10VI GCNNNNNNNGC 1 cut(s) 185
HpyF3I CTNAG 1 cut(s) 74
HpySE526I ACGT 1 cut(s) 44
Hsp92I GRCGYC 2 cut(s) 44, 158
Hsp92II CATG 5 cut(s) 127, 229, 388, 395, 442
HspAI GCGC 2 cut(s) 139, 158
KasI GGCGCC 1 cut(s) 157
Ksp22I TGATCA 1 cut(s) 172
Kzo9I GATC 2 cut(s) 172, 430
LpnPI CCDG 5 cut(s) 52, 156, 174, 174, 459
LweI GCATC 2 cut(s) 305, 485
MaeI CTAG 1 cut(s) 480
MaeII ACGT 1 cut(s) 44
MaeIII GTNAC 1 cut(s) 387
MalI GATC 2 cut(s) 174, 432
MboI GATC 2 cut(s) 172, 430
MfeI CAATTG 2 cut(s) 152, 231
MflI RGATCY 1 cut(s) 430
MhlI GDGCHC 2 cut(s) 328, 384
MluCI AATT 3 cut(s) 152, 231, 515
Mly113I GGCGCC 1 cut(s) 158
MmeI TCCRAC 1 cut(s) 6
MnlI CCTC 8 cut(s) 48, 69, 130, 208, 313, 359, 446, 484
MroXI GAANNNNTTC 1 cut(s) 240
MspI CCGG 1 cut(s) 161
MunI CAATTG 2 cut(s) 152, 231
Mva1269I GAATGC 1 cut(s) 90
MvnI CGCG 2 cut(s) 139, 354
MwoI GCNNNNNNNGC 1 cut(s) 185
NarI GGCGCC 1 cut(s) 158
NcoI CCATGG 1 cut(s) 123
NdeI CATATG 1 cut(s) 376
NdeII GATC 2 cut(s) 172, 430
NlaIII CATG 5 cut(s) 127, 229, 388, 395, 442
NlaIV GGNNCC 1 cut(s) 159
NmuCI GTSAC 1 cut(s) 387
NspI RCATGY 1 cut(s) 229
PaeI GCATGC 1 cut(s) 229
PagI TCATGA 1 cut(s) 438
PceI AGGCCT 1 cut(s) 108
PcsI WCGNNNNNNNCGW 1 cut(s) 50
PctI GAATGC 1 cut(s) 90
PdmI GAANNNNTTC 1 cut(s) 240
PfeI GAWTC 1 cut(s) 509
PflFI GACNNNGTC 1 cut(s) 43
PluTI GGCGCC 1 cut(s) 161
Psp124BI GAGCTC 1 cut(s) 384
PspN4I GGNNCC 1 cut(s) 159
PspPI GGNCC 1 cut(s) 368
PstNI CAGNNNCTG 1 cut(s) 66
PsuI RGATCY 1 cut(s) 430
PsyI GACNNNGTC 1 cut(s) 43
RsaI GTAC 2 cut(s) 72, 210
RsaNI GTAC 2 cut(s) 71, 209
SacI GAGCTC 1 cut(s) 384
Sau3AI GATC 2 cut(s) 172, 430
Sau96I GGNCC 1 cut(s) 368
SduI GDGCHC 2 cut(s) 328, 384
SetI ASST 6 cut(s) 47, 169, 210, 339, 351, 384
SfaNI GCATC 2 cut(s) 305, 485
SfoI GGCGCC 1 cut(s) 159
SinI GGWCC 1 cut(s) 368
SmlI CTYRAG 1 cut(s) 212
SmoI CTYRAG 1 cut(s) 212
SphI GCATGC 1 cut(s) 229
Sse9I AATT 3 cut(s) 152, 231, 515
SseBI AGGCCT 1 cut(s) 108
SsiI CCGC 4 cut(s) 4, 35, 184, 352
SspDI GGCGCC 1 cut(s) 157
SspI AATATT 1 cut(s) 310
SspMI CTAG 1 cut(s) 480
SstI GAGCTC 1 cut(s) 384
StuI AGGCCT 1 cut(s) 108
StyI CCWWGG 1 cut(s) 123
TaiI ACGT 1 cut(s) 47
TaqI TCGA 2 cut(s) 266, 465
TasI AATT 3 cut(s) 152, 231, 515
TfiI GAWTC 1 cut(s) 509
TseFI GTSAC 1 cut(s) 387
Tsp45I GTSAC 1 cut(s) 387
TspDTI ATGAA 2 cut(s) 363, 455
Tth111I GACNNNGTC 1 cut(s) 43
VpaK11BI GGWCC 1 cut(s) 368
XbaI TCTAGA 1 cut(s) 479
XceI RCATGY 1 cut(s) 229
XmnI GAANNNNTTC 1 cut(s) 240
XspI CTAG 1 cut(s) 480
ZraI GACGTC 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.