FvH4_2g16540
ERF Family

Histidine phosphatase superfamily (branch 1)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0003894
Physical Location & Seq
Forward (+)
14421228 .. 14423424
2197 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g16540.t1

Sequence Viewer

Length: 687 bp
ATGGCGGAGACGACGTCGTTTGGGAGGAACAGGTACTGGATACTGAGGCACGGCAAGAGCATTCCTAATGAGAAAGGCTTAATCGTCTCCTCCATGGAAAATGGGACGCGCCCGGAGTATCAATTGGCACCGGAGGGTGTTAATCAGGCAAAACTGGCCGGAGAGTTGTTCCGAAAGGTCCTTGAGGAAAATAATGTGCCGATTGAGAATGTTCGCATTTGCTACTCTCCATTTTCGAGAACAAGACAGACTGCGCAAGTTGTTGCATCTGTCTTGAATATTCAGTTTGAAGGTGCTCAATGTAAGGTGATGGAAAACCTCCGCGAACGTTTCTTTGGTCCTTCCTATGAGCTCAAGTCACATGATAAATATAACGAAGTATGGGCTATTGATGAGAAAGATCCACTCATGAAGCCAGAAGGAGGAGAAAGTGTCCATGATGTTGCATCTAGAATTGTAGAGGCTGTGGCAAACATGGAATCGCAATTTCAAGGGTGCACAGTCTTAGTTGTTAGTCATGGCGATACCTTACAAATCTTGCAAACAATATTGAATGCTGCTAAGGCTGATGCAGGATCCACCTATGATGACTTGACTTCAAGAATGCAAGCAGTAAGAACCCCTTCCATCTTGTCAGAGCACCGGAAATTTTCCTTGCTTACTGCAGAGCTTCGGCCAATTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
His_Phos_1

Protein Analysis

229

Amino Acids

25.6

Weight (kDa)

6.0

Isoelectric Point (pI)

35.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
His_Phos_1 PF00300 13 - 186 7.1e-24 Histidine phosphatase superfamily (branch 1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 17
Acc16I TGCGCA 1 cut(s) 255
AccB1I GGYRCC 1 cut(s) 127
AccII CGCG 2 cut(s) 109, 324
AciI CCGC 2 cut(s) 5, 322
AclI AACGTT 1 cut(s) 328
AclWI GGATC 3 cut(s) 395, 570, 583
AcoI YGGCCR 2 cut(s) 156, 674
AcsI RAATTY 1 cut(s) 647
AcyI GRCGYC 1 cut(s) 14
AfaI GTAC 1 cut(s) 35
AfiI CCNNNNNNNGG 1 cut(s) 422
AgsI TTSAA 5 cut(s) 277, 290, 491, 553, 600
AjuI GAANNNNNNNTTGG 2 cut(s) 318, 350
AluBI AGCT 2 cut(s) 352, 670
AluI AGCT 2 cut(s) 352, 670
Alw21I GWGCWC 4 cut(s) 298, 354, 500, 642
Alw26I GTCTC 2 cut(s) 2, 91
Alw44I GTGCAC 1 cut(s) 496
AlwI GGATC 3 cut(s) 395, 570, 583
AlwNI CAGNNNCTG 1 cut(s) 36
AoxI GGCC 2 cut(s) 156, 674
ApaLI GTGCAC 1 cut(s) 496
ApeKI GCWGC 1 cut(s) 557
ApoI RAATTY 1 cut(s) 647
Asp700I GAANNNNTTC 1 cut(s) 622
AspLEI GCGC 2 cut(s) 111, 256
AspS9I GGNCC 2 cut(s) 178, 338
AsuC2I CCSGG 1 cut(s) 113
AsuHPI GGTGA 1 cut(s) 319
AvaII GGWCC 2 cut(s) 178, 338
BaeGI GKGCMC 1 cut(s) 500
BamHI GGATCC 1 cut(s) 575
BanI GGYRCC 1 cut(s) 127
BanII GRGCYC 1 cut(s) 354
Bbv12I GWGCWC 4 cut(s) 298, 354, 500, 642
BbvI GCAGC 1 cut(s) 544
BccI CCATC 2 cut(s) 304, 635
BceAI ACGGC 1 cut(s) 67
BciVI GTATCC 1 cut(s) 33
BcnI CCSGG 1 cut(s) 113
BcoDI GTCTC 2 cut(s) 2, 91
BfaI CTAG 1 cut(s) 450
BfmI CTRYAG 1 cut(s) 663
BfuI GTATCC 1 cut(s) 33
BisI GCNGC 1 cut(s) 558
BlsI GCNGC 1 cut(s) 559
Bme1390I CCNGG 1 cut(s) 113
Bme18I GGWCC 2 cut(s) 178, 338
BmgT120I GGNCC 2 cut(s) 178, 338
BmiI GGNNCC 2 cut(s) 129, 577
BmrFI CCNGG 1 cut(s) 113
BmsI GCATC 3 cut(s) 275, 455, 559
Bpu10I CCTNAGC 1 cut(s) 561
BpuEI CTTGAG 2 cut(s) 203, 338
BpuMI CCSGG 1 cut(s) 113
BsaHI GRCGYC 1 cut(s) 14
BsaJI CCNNGG 1 cut(s) 93
BsaWI WCCGGW 2 cut(s) 130, 642
BsaXI ACNNNNNCTCC 3 cut(s) 29, 417, 447
Bsc4I CCNNNNNNNGG 1 cut(s) 422
Bse1I ACTGG 2 cut(s) 41, 159
BseDI CCNNGG 1 cut(s) 93
BseLI CCNNNNNNNGG 1 cut(s) 422
BseMII CTCAG 1 cut(s) 35
BseNI ACTGG 2 cut(s) 41, 159
BseRI GAGGAG 2 cut(s) 79, 438
BseSI GKGCMC 1 cut(s) 500
BseXI GCAGC 1 cut(s) 544
Bsh1236I CGCG 2 cut(s) 109, 324
BshFI GGCC 2 cut(s) 158, 676
BshNI GGYRCC 1 cut(s) 127
BsiHKAI GWGCWC 4 cut(s) 298, 354, 500, 642
BsiSI CCGG 4 cut(s) 113, 131, 159, 643
BslFI GGGAC 1 cut(s) 118
BslI CCNNNNNNNGG 1 cut(s) 422
BsmAI GTCTC 2 cut(s) 2, 91
BsmBI CGTCTC 2 cut(s) 2, 91
BsmFI GGGAC 1 cut(s) 118
BsmI GAATGC 3 cut(s) 60, 559, 609
BsnI GGCC 2 cut(s) 158, 676
Bsp1286I GDGCHC 4 cut(s) 298, 354, 500, 642
Bsp143I GATC 2 cut(s) 400, 575
Bsp19I CCATGG 1 cut(s) 93
BspACI CCGC 2 cut(s) 5, 322
BspANI GGCC 2 cut(s) 158, 676
BspCNI CTCAG 1 cut(s) 36
BspFNI CGCG 2 cut(s) 109, 324
BspHI TCATGA 1 cut(s) 408
BspLI GGNNCC 2 cut(s) 129, 577
BspMAI CTGCAG 1 cut(s) 667
BspPI GGATC 3 cut(s) 395, 570, 583
BspT107I GGYRCC 1 cut(s) 127
BsrI ACTGG 2 cut(s) 41, 159
BssECI CCNNGG 1 cut(s) 93
BssMI GATC 2 cut(s) 400, 575
BssNI GRCGYC 1 cut(s) 14
BssT1I CCWWGG 1 cut(s) 93
Bst4CI ACNGT 1 cut(s) 502
BstACI GRCGYC 1 cut(s) 14
BstC8I GCNNGC 1 cut(s) 609
BstDEI CTNAG 3 cut(s) 44, 505, 561
BstDSI CCRYGG 1 cut(s) 93
BstFNI CGCG 2 cut(s) 109, 324
BstHHI GCGC 2 cut(s) 111, 256
BstKTI GATC 2 cut(s) 403, 578
BstMAI GTCTC 2 cut(s) 2, 91
BstMBI GATC 2 cut(s) 400, 575
BstMWI GCNNNNNNNGC 2 cut(s) 155, 563
BstSCI CCNGG 1 cut(s) 111
BstSFI CTRYAG 1 cut(s) 663
BstSLI GKGCMC 1 cut(s) 500
BstUI CGCG 2 cut(s) 109, 324
BstV1I GCAGC 1 cut(s) 544
BstX2I RGATCY 2 cut(s) 400, 575
BstYI RGATCY 2 cut(s) 400, 575
BsuI GTATCC 1 cut(s) 33
BsuRI GGCC 2 cut(s) 158, 676
BtgI CCRYGG 1 cut(s) 93
Cac8I GCNNGC 1 cut(s) 609
CaiI CAGNNNCTG 1 cut(s) 36
CciI TCATGA 1 cut(s) 408
CfoI GCGC 2 cut(s) 111, 256
Cfr13I GGNCC 2 cut(s) 178, 338
CseI GACGC 1 cut(s) 115
Csp6I GTAC 1 cut(s) 34
CviAII CATG 6 cut(s) 94, 362, 409, 437, 475, 518
CviJI RGCY 9 cut(s) 78, 158, 352, 386, 415, 464, 566, 670, 676
CviKI_1 RGCY 9 cut(s) 78, 158, 352, 386, 415, 464, 566, 670, 676
CviQI GTAC 1 cut(s) 34
DdeI CTNAG 3 cut(s) 44, 505, 561
DpnI GATC 2 cut(s) 402, 577
DpnII GATC 2 cut(s) 400, 575
EaeI YGGCCR 2 cut(s) 156, 674
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 352
Eco130I CCWWGG 1 cut(s) 93
Eco24I GRGCYC 1 cut(s) 354
Eco47I GGWCC 2 cut(s) 178, 338
Eco53kI GAGCTC 1 cut(s) 352
EcoICRI GAGCTC 1 cut(s) 352
EcoO109I RGGNCCY 1 cut(s) 178
EcoT14I CCWWGG 1 cut(s) 93
EcoT38I GRGCYC 1 cut(s) 354
ErhI CCWWGG 1 cut(s) 93
Esp3I CGTCTC 2 cut(s) 2, 91
FaeI CATG 6 cut(s) 97, 365, 412, 440, 478, 521
FalI AAGNNNNNCTT 2 cut(s) 607, 639
FaqI GGGAC 1 cut(s) 118
FatI CATG 6 cut(s) 93, 361, 408, 436, 474, 517
Fnu4HI GCNGC 1 cut(s) 558
FriOI GRGCYC 1 cut(s) 354
Fsp4HI GCNGC 1 cut(s) 558
FspBI CTAG 1 cut(s) 450
FspI TGCGCA 1 cut(s) 255
GlaI GCGC 2 cut(s) 110, 255
GluI GCNGC 1 cut(s) 558
HaeIII GGCC 2 cut(s) 158, 676
HapII CCGG 4 cut(s) 113, 131, 159, 643
HgaI GACGC 1 cut(s) 115
HhaI GCGC 2 cut(s) 111, 256
Hin1I GRCGYC 1 cut(s) 14
Hin1II CATG 6 cut(s) 97, 365, 412, 440, 478, 521
Hin6I GCGC 2 cut(s) 109, 254
HinP1I GCGC 2 cut(s) 109, 254
HinfI GANTC 1 cut(s) 479
HpaII CCGG 4 cut(s) 113, 131, 159, 643
HphI GGTGA 1 cut(s) 319
Hpy166II GTNNAC 1 cut(s) 498
Hpy188I TCNGA 2 cut(s) 173, 637
Hpy188III TCNNGA 5 cut(s) 237, 274, 409, 450, 600
Hpy8I GTNNAC 1 cut(s) 498
Hpy99I CGWCG 2 cut(s) 16, 19
HpyAV CCTTC 4 cut(s) 284, 351, 413, 633
HpyCH4III ACNGT 1 cut(s) 502
HpyCH4IV ACGT 2 cut(s) 14, 328
HpyCH4V TGCA 7 cut(s) 266, 446, 498, 541, 572, 607, 665
HpyF10VI GCNNNNNNNGC 2 cut(s) 155, 563
HpyF3I CTNAG 3 cut(s) 44, 505, 561
HpySE526I ACGT 2 cut(s) 14, 328
Hsp92I GRCGYC 1 cut(s) 14
Hsp92II CATG 6 cut(s) 97, 365, 412, 440, 478, 521
HspAI GCGC 2 cut(s) 109, 254
Kzo9I GATC 2 cut(s) 400, 575
Lsp1109I GCAGC 1 cut(s) 544
LweI GCATC 3 cut(s) 275, 455, 559
MaeI CTAG 1 cut(s) 450
MaeII ACGT 2 cut(s) 14, 328
MaeIII GTNAC 1 cut(s) 357
MalI GATC 2 cut(s) 402, 577
MboI GATC 2 cut(s) 400, 575
MfeI CAATTG 1 cut(s) 122
MflI RGATCY 2 cut(s) 400, 575
MhlI GDGCHC 4 cut(s) 298, 354, 500, 642
MluCI AATT 5 cut(s) 122, 453, 485, 647, 678
MnlI CCTC 8 cut(s) 18, 39, 100, 127, 178, 329, 416, 454
MroXI GAANNNNTTC 1 cut(s) 622
MseI TTAA 2 cut(s) 80, 141
MspI CCGG 4 cut(s) 113, 131, 159, 643
MspR9I CCNGG 1 cut(s) 113
MunI CAATTG 1 cut(s) 122
Mva1269I GAATGC 3 cut(s) 60, 559, 609
MvnI CGCG 2 cut(s) 109, 324
MwoI GCNNNNNNNGC 2 cut(s) 155, 563
NciI CCSGG 1 cut(s) 113
NcoI CCATGG 1 cut(s) 93
NdeII GATC 2 cut(s) 400, 575
NlaIII CATG 6 cut(s) 97, 365, 412, 440, 478, 521
NlaIV GGNNCC 2 cut(s) 129, 577
NmuCI GTSAC 1 cut(s) 357
NsbI TGCGCA 1 cut(s) 255
PagI TCATGA 1 cut(s) 408
PctI GAATGC 3 cut(s) 60, 559, 609
PdmI GAANNNNTTC 1 cut(s) 622
PfeI GAWTC 1 cut(s) 479
PflFI GACNNNGTC 1 cut(s) 13
PkrI GCNGC 1 cut(s) 559
PpuMI RGGWCCY 1 cut(s) 178
Psp124BI GAGCTC 1 cut(s) 354
Psp1406I AACGTT 1 cut(s) 328
Psp5II RGGWCCY 1 cut(s) 178
PspN4I GGNNCC 2 cut(s) 129, 577
PspPI GGNCC 2 cut(s) 178, 338
PspPPI RGGWCCY 1 cut(s) 178
PstI CTGCAG 1 cut(s) 667
PstNI CAGNNNCTG 1 cut(s) 36
PsuI RGATCY 2 cut(s) 400, 575
PsyI GACNNNGTC 1 cut(s) 13
RsaI GTAC 1 cut(s) 35
RsaNI GTAC 1 cut(s) 34
SacI GAGCTC 1 cut(s) 354
SaqAI TTAA 2 cut(s) 80, 141
SatI GCNGC 1 cut(s) 558
Sau3AI GATC 2 cut(s) 400, 575
Sau96I GGNCC 2 cut(s) 178, 338
ScrFI CCNGG 1 cut(s) 113
SduI GDGCHC 4 cut(s) 298, 354, 500, 642
SfaNI GCATC 3 cut(s) 275, 455, 559
SfcI CTRYAG 1 cut(s) 663
SinI GGWCC 2 cut(s) 178, 338
SmlI CTYRAG 2 cut(s) 182, 353
SmoI CTYRAG 2 cut(s) 182, 353
Sse9I AATT 5 cut(s) 122, 453, 485, 647, 678
SsiI CCGC 2 cut(s) 5, 322
SspI AATATT 2 cut(s) 280, 549
SspMI CTAG 1 cut(s) 450
SstI GAGCTC 1 cut(s) 354
StyD4I CCNGG 1 cut(s) 111
StyI CCWWGG 1 cut(s) 93
TaaI ACNGT 1 cut(s) 502
TaiI ACGT 2 cut(s) 17, 331
TaqI TCGA 1 cut(s) 236
TasI AATT 5 cut(s) 122, 453, 485, 647, 678
TfiI GAWTC 1 cut(s) 479
Tru1I TTAA 2 cut(s) 80, 141
Tru9I TTAA 2 cut(s) 80, 141
TseFI GTSAC 1 cut(s) 357
TseI GCWGC 1 cut(s) 557
Tsp45I GTSAC 1 cut(s) 357
TspDTI ATGAA 1 cut(s) 425
Tth111I GACNNNGTC 1 cut(s) 13
VneI GTGCAC 1 cut(s) 496
VpaK11BI GGWCC 2 cut(s) 178, 338
XapI RAATTY 1 cut(s) 647
XbaI TCTAGA 1 cut(s) 449
XmnI GAANNNNTTC 1 cut(s) 622
XspI CTAG 1 cut(s) 450
ZraI GACGTC 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.