Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8448883.1

Orthogroup ID

OG0003894

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 420

Gene Structure 420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8448883.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 193 bp

gtgcacgatcttagttgttagtcatggcgatcccctacaaatcttgcaagctatattgaatgctactaagctaaacaccgaatccagttatgacgacttggcatcaagaattcaaaatgttaaagctccttccatcttgtcacagcacaggaaatttaacctgcgaactggggagctccgggcagttatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

His_Phos_1

Protein Analysis

63

Amino Acids

6.97

Weight (kDa)

9.11

Isoelectric Point (pI)

61.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003894)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38370
fragaria_vesca	FvH4_2g16540 FvH4_7g04340
malus_domestica	MD05G1133800.v1.1 MD10G1138800.v1.1
prunus_persica	Prupe.8G177600_v2.0.a1 Prupe.8G177600_v2.0.a1
pyrus_communis	pycom05g13060 pycom10g11800
rosa_chinensis	RchiOBHm_Chr1g0329291 RchiOBHm_Chr6g0280561
rosa_laevigata	RLG00000013054 RLG00000029903
rosa_multiflora	Rmu_co8146946.1_g000001 Rmu_co8448883.1_g000001 Rmu_sc0015818.1_g000007
rosa_roxburghii	Rroxscaffold_4G00321230 Rroxscaffold_7G00187990
rosa_rugosa	Rorug06G0132000 Rorug06G0132000 Rorug06G0132100 Rorug06G0132200 Rorug06G0132300 Rorug06G0132400.1
rosa_samantha	Rh1AG096800 Rh1BG077400 Rh1CG093600 Rh1CG093700 Rh6AG244600 Rh6BG247000 Rh6CG248600 Rh6DG239800
rosa_wichuraiana	Rw1G007540 Rw6G021180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	169
AclWI	GGATC	1 cut(s)	24
AcsI	RAATTY	2 cut(s)	109, 153
AgsI	TTSAA	2 cut(s)	59, 114
AluBI	AGCT	4 cut(s)	51, 71, 126, 176
AluI	AGCT	4 cut(s)	51, 71, 126, 176
Alw21I	GWGCWC	2 cut(s)	6, 178
Alw44I	GTGCAC	1 cut(s)	2
AlwI	GGATC	1 cut(s)	24
ApaLI	GTGCAC	1 cut(s)	2
ApoI	RAATTY	2 cut(s)	109, 153
AsuC2I	CCSGG	1 cut(s)	180
BaeGI	GKGCMC	1 cut(s)	6
BanII	GRGCYC	1 cut(s)	178
Bbv12I	GWGCWC	2 cut(s)	6, 178
BccI	CCATC	1 cut(s)	141
BcnI	CCSGG	1 cut(s)	180
BfuAI	ACCTGC	1 cut(s)	169
Bme1390I	CCNGG	1 cut(s)	180
BmrFI	CCNGG	1 cut(s)	180
BmrI	ACTGGG	1 cut(s)	178
BmsI	GCATC	1 cut(s)	111
BmuI	ACTGGG	1 cut(s)	178
BpuMI	CCSGG	1 cut(s)	180
Bse1I	ACTGG	2 cut(s)	85, 173
BseNI	ACTGG	2 cut(s)	85, 173
BseSI	GKGCMC	1 cut(s)	6
BsiHKAI	GWGCWC	2 cut(s)	6, 178
BsiSI	CCGG	1 cut(s)	179
BsmI	GAATGC	1 cut(s)	65
Bsp1286I	GDGCHC	2 cut(s)	6, 178
Bsp143I	GATC	2 cut(s)	7, 29
BspMI	ACCTGC	1 cut(s)	169
BspPI	GGATC	1 cut(s)	24
BsrI	ACTGG	2 cut(s)	85, 173
BssMI	GATC	2 cut(s)	7, 29
BstC8I	GCNNGC	1 cut(s)	49
BstDEI	CTNAG	2 cut(s)	11, 67
BstKTI	GATC	2 cut(s)	10, 32
BstMBI	GATC	2 cut(s)	7, 29
BstSCI	CCNGG	1 cut(s)	178
BstSLI	GKGCMC	1 cut(s)	6
BveI	ACCTGC	1 cut(s)	169
Cac8I	GCNNGC	1 cut(s)	49
CviAII	CATG	1 cut(s)	24
CviJI	RGCY	4 cut(s)	51, 71, 126, 176
CviKI_1	RGCY	4 cut(s)	51, 71, 126, 176
DdeI	CTNAG	2 cut(s)	11, 67
DpnI	GATC	2 cut(s)	9, 31
DpnII	GATC	2 cut(s)	7, 29
Ecl136II	GAGCTC	1 cut(s)	176
Eco24I	GRGCYC	1 cut(s)	178
Eco53kI	GAGCTC	1 cut(s)	176
EcoICRI	GAGCTC	1 cut(s)	176
EcoRI	GAATTC	1 cut(s)	109
EcoT38I	GRGCYC	1 cut(s)	178
FaeI	CATG	1 cut(s)	27
FaiI	YATR	5 cut(s)	25, 54, 91, 189, 191
FatI	CATG	1 cut(s)	23
FriOI	GRGCYC	1 cut(s)	178
HapII	CCGG	1 cut(s)	179
Hin1II	CATG	1 cut(s)	27
HinfI	GANTC	1 cut(s)	81
HpaII	CCGG	1 cut(s)	179
Hpy166II	GTNNAC	1 cut(s)	4
Hpy188III	TCNNGA	1 cut(s)	106
Hpy8I	GTNNAC	1 cut(s)	4
HpyAV	CCTTC	1 cut(s)	139
HpyCH4V	TGCA	2 cut(s)	4, 47
HpyF3I	CTNAG	2 cut(s)	11, 67
Hsp92II	CATG	1 cut(s)	27
Kzo9I	GATC	2 cut(s)	7, 29
LmnI	GCTCC	3 cut(s)	131, 173, 181
LpnPI	CCDG	4 cut(s)	98, 134, 154, 174
LweI	GCATC	1 cut(s)	111
MaeIII	GTNAC	1 cut(s)	139
MalI	GATC	2 cut(s)	9, 31
MboI	GATC	2 cut(s)	7, 29
MhlI	GDGCHC	2 cut(s)	6, 178
MluCI	AATT	2 cut(s)	109, 153
MseI	TTAA	2 cut(s)	121, 157
MspI	CCGG	1 cut(s)	179
MspR9I	CCNGG	1 cut(s)	180
Mva1269I	GAATGC	1 cut(s)	65
NciI	CCSGG	1 cut(s)	180
NdeII	GATC	2 cut(s)	7, 29
NlaIII	CATG	1 cut(s)	27
NmuCI	GTSAC	1 cut(s)	139
PctI	GAATGC	1 cut(s)	65
PfeI	GAWTC	1 cut(s)	81
Psp124BI	GAGCTC	1 cut(s)	178
SacI	GAGCTC	1 cut(s)	178
SaqAI	TTAA	2 cut(s)	121, 157
Sau3AI	GATC	2 cut(s)	7, 29
ScrFI	CCNGG	1 cut(s)	180
SduI	GDGCHC	2 cut(s)	6, 178
SetI	ASST	5 cut(s)	53, 73, 128, 163, 178
SfaNI	GCATC	1 cut(s)	111
Sse9I	AATT	2 cut(s)	109, 153
SstI	GAGCTC	1 cut(s)	178
StyD4I	CCNGG	1 cut(s)	178
TasI	AATT	2 cut(s)	109, 153
TfiI	GAWTC	1 cut(s)	81
Tru1I	TTAA	2 cut(s)	121, 157
Tru9I	TTAA	2 cut(s)	121, 157
TseFI	GTSAC	1 cut(s)	139
Tsp45I	GTSAC	1 cut(s)	139
VneI	GTGCAC	1 cut(s)	2
XapI	RAATTY	2 cut(s)	109, 153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.