Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004194

Physical Location & Seq

Genomic Coordinates Reverse (-)

18135796 .. 18139266

Gene Structure 3471 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G38890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2076 bp

ATGTCAGATGTAATAGCGGAGCACGCGGTGGATACTAGTGTTGAAGGAGATGCAAAGGCTGCGTTACCGGTTCAATCGACGAAACAGTTCTCTGTGTATGAAGCGACTTCGGAAGAGCTTATAGAACGATCAATGGCTCCTATTAAGAAGGAGTTCCTTTGTCCTCCTCCTCCAAGCCGTTCCGTGAAGCAAAATGATGCCGCCGATGTTAGGGCGCCTCAATCGGGTTTGGTTCAGGAGAAGAAATCTAAACGACAACTGAAACGGGAACGCCGCGAGCAATCTACGATCAATCTCTGTCCGCAGGTTGCGAGAACAGAAGACGTTGATTCATGTCAGTATAAAGACAAGTGCCGGTTTAATCATGATATTGAGGCTTTCAAGGCTCAGAAGGCAGATGATATAGAGGGGCAATGCCCATTTGTGGCCTCTGGAATGAAGTGTGCATATGGTTTATCATGTAGATTCTTAGGCAGTCACAGAGATATTACTGGTAATTCAGATGACAAGGAAAAATCAGAGATGAACTTTTTTAACAAAGAGACACAGAGGCTTCTGTGGAAAAATAAGATGACTTTTACAAACGCAGATGCGAAACTTAAGTCCCTCGGTCTGTTGGGACATGCCAAAAAAAGCAATGCTGCCGAGGAAATTACCGCAGAAAAAACTCAAAATGGTATGAACGGCACTCAAGCAACTGAAGTAGCGGTTGACTCAGCTGTCAGTTCTGAGCATACATCAGAAATGATACAAGATGTTGATATTCCTGGACCATTAGAAACTGAGGAAGTTCGTCCCATGAAAAAGGCAAAATCTGAGGACCAAAAGAATTCTAAAACTGGAGATGTTGGTGGAGTTTATGATGGCGTGAAATTGGAAGAGGAAACGAAAAAGAATGGGTATCCTACTTCAAAAGCTAACGTAGAAGATGAGGATAGCATCAAAATTGTTGAAACTGATAGTAGTCTAAAGTTGCACCCTCGAGAAAAGAAAAAGCTAATTGATTTTAGGGATAAGTTGTACCTTGCACCCTTAACAACCGTGGGCAATCTTCCCTTCCGAAGACTTTGTAAAGTGTTGGGAGCAGATGTGACTTGTGGTGAGATGGCTATGTGCACAAATCTTTTGCAGGGCCAAGCTTCTGAATGGGCTCTGCTTAGACGACATTCATCGGAAGATCTGTTTGGTGTTCAGATTTGCGGTTCTTATCCTGACACGGTGTCGCGCGTAGTTGAACTTATAGACCGAGAATGCACTGTTGATTTCATAGATATCAACATGGGTTGCCCGATAGATATGGTTGTCAACAAAAGTGCTGGTTCAGCTCTTCTCAACAAACCATTACGGATGAAGAACATCGTGGAAGTCTCTTCTTCCATTGTTGAAACACCTATCACTATCAAGGTACGAACAGCATTCTTTGAGGGTAAGAACCGGATAGATTCTTTAATTGCAGATATCGGAAACTGGGGAGCCACTGCAGTGACTATTCATGGGCGGTCAAGACAGCAACGTTATAGCAAGTCTGCAGATTGGGACTATATATACCAGTGTACCAAAAACGCTACTACTAACCTACAGGTTATAGGAAATGGAGATGTGTACTCATATTTAGACTGGAACAAACACAAGTCTGACTGTCCTGAGTTGTCTAGCTGCATGATTGCTCGTGGAGCACTGATCAAGCCTTGGATCTTTACTGAAATTAAAGAGCAACGGCATTGGGACATTACCTCTGGAGAAAGACTTAACATCATGAAGGACTTCGTACGTTTTGGTCTTCAACATTGGGGATCCGACACGAAAGGAGTTGAGACAACTAGGCATTTCTTGCTGGAGTGGCTAAGCTACACATTTAGGTACATACCTGTCGGTTTGCTTGATGTGATCCCGCAGCAAATCAACTGGCGTCCGCCTTCATACTTTGGTCGTGATGATCTCGAGACACTCATGATGTCTGAATCTGCGGGTGACTGGGTGCGGATATCGGAAATGCTGCTTGGAAAGGTTCCGGAGGGCTTCACATTTGCCCCCAAGCACAAATCCAACGCATATGACAGAGCTGAAAACGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002943 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016491 GO:0016627 GO:0017150 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0055114 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dus zf-CCCH

Protein Analysis

691

Amino Acids

77.57

Weight (kDa)

6.1

Isoelectric Point (pI)

41.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH_DUS3L	PF25585	98 - 130	1.1e-08	DUS3L CCCH zinc finger domain
Dus	PF01207	342 - 578	3.4e-47	Dihydrouridine synthase (Dus)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004194)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38890
fragaria_vesca	FvH4_2g10690 FvH4_2g10690 FvH4_2g10690 FvH4_2g10690 FvH4_2g10690 FvH4_2g10690 FvH4_2g10690 FvH4_2g10690
malus_domestica	MD05G1054400.v1.1 MD10G1062000.v1.1
prunus_persica	Prupe.8G082800_v2.0.a1
pyrus_communis	pycom10g04770
rosa_chinensis	RchiOBHm_Chr6g0268371 RchiOBHm_Chr6g0268451 RchiOBHm_Chr6g0268461 RchiOBHm_Chr6g0271651 RchiOBHm_Chr6g0271661
rosa_laevigata	RLG00000013910
rosa_multiflora	Rmu_sc0002404.1_g000009 Rmu_sc0002404.1_g000017 Rmu_sc0007949.1_g000004 Rmu_sc0008184.1_g000007
rosa_roxburghii	Rroxscaffold_7G00199830
rosa_rugosa	Rorug06G0041000 Rorug06G0042100
rosa_samantha	Rh6AG161000 Rh6BG165400 Rh6CG152700 Rh6CG159400 Rh6DG151200
rosa_wichuraiana	Rw6G013920 Rw6G013960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	719
Acc36I	ACCTGC	1 cut(s)	295
AccB1I	GGYRCC	1 cut(s)	214
AccII	CGCG	4 cut(s)	26, 276, 1225, 1227
AccIII	TCCGGA	1 cut(s)	2011
AclI	AACGTT	1 cut(s)	1513
AclWI	GGATC	4 cut(s)	1700, 1788, 1801, 1882
AcsI	RAATTY	1 cut(s)	829
AcuI	CTGAAG	1 cut(s)	720
AcyI	GRCGYC	2 cut(s)	215, 1909
AdeI	CACNNNGTG	1 cut(s)	28
AfaI	GTAC	6 cut(s)	1022, 1407, 1555, 1604, 1770, 1862
AfiI	CCNNNNNNNGG	3 cut(s)	210, 224, 424
AflII	CTTAAG	1 cut(s)	599
AgeI	ACCGGT	1 cut(s)	67
AgsI	TTSAA	8 cut(s)	44, 74, 382, 912, 953, 1235, 1385, 1784
AhdI	GACNNNNNGTC	1 cut(s)	1219
AhlI	ACTAGT	1 cut(s)	35
AjnI	CCWGG	1 cut(s)	766
AjuI	GAANNNNNNNTTGG	4 cut(s)	1167, 1199, 1983, 2015
AleI	CACNNNNGTG	1 cut(s)	1481
AluBI	AGCT	9 cut(s)	118, 719, 917, 997, 1139, 1325, 1656, 1848, 2063
AluI	AGCT	9 cut(s)	118, 719, 917, 997, 1139, 1325, 1656, 1848, 2063
Alw21I	GWGCWC	3 cut(s)	24, 1118, 1678
Alw26I	GTCTC	4 cut(s)	536, 1372, 1808, 1937
Alw44I	GTGCAC	1 cut(s)	1114
AlwI	GGATC	4 cut(s)	1700, 1788, 1801, 1882
Ama87I	CYCGRG	2 cut(s)	981, 1940
Aor13HI	TCCGGA	1 cut(s)	2011
AoxI	GGCC	2 cut(s)	426, 1132
ApaLI	GTGCAC	1 cut(s)	1114
ApeKI	GCWGC	5 cut(s)	59, 641, 1656, 1894, 1996
ApoI	RAATTY	1 cut(s)	829
ArsI	GACNNNNNNTTYG	2 cut(s)	587, 619
AsiGI	ACCGGT	1 cut(s)	67
Asp700I	GAANNNNTTC	3 cut(s)	86, 152, 1763
AspLEI	GCGC	2 cut(s)	217, 1227
AspS9I	GGNCC	3 cut(s)	770, 820, 1132
AsuHPI	GGTGA	2 cut(s)	1112, 1982
AvaI	CYCGRG	2 cut(s)	981, 1940
AvaII	GGWCC	2 cut(s)	770, 820
BaeGI	GKGCMC	1 cut(s)	1118
BaeI	ACNNNNGTAYC	4 cut(s)	24, 57, 1537, 1570
BamHI	GGATCC	1 cut(s)	1793
BanI	GGYRCC	1 cut(s)	214
BanII	GRGCYC	1 cut(s)	1153
BauI	CACGAG	1 cut(s)	1668
BbsI	GAAGAC	3 cut(s)	327, 1069, 1772
Bbv12I	GWGCWC	3 cut(s)	24, 1118, 1678
BbvI	GCAGC	5 cut(s)	46, 628, 1643, 1906, 1983
BccI	CCATC	2 cut(s)	857, 1099
BceAI	ACGGC	3 cut(s)	162, 700, 1733
BciT130I	CCWGG	1 cut(s)	768
BciVI	GTATCC	2 cut(s)	25, 912
BclI	TGATCA	1 cut(s)	1680
BcoDI	GTCTC	4 cut(s)	536, 1372, 1808, 1937
BcuI	ACTAGT	1 cut(s)	35
BfaI	CTAG	3 cut(s)	36, 1653, 1821
BfmI	CTRYAG	3 cut(s)	1479, 1527, 1577
BfoI	RGCGCY	1 cut(s)	218
BfrI	CTTAAG	1 cut(s)	599
BfuAI	ACCTGC	1 cut(s)	295
BfuI	GTATCC	2 cut(s)	25, 912
BglII	AGATCT	1 cut(s)	1177
BisI	GCNGC	7 cut(s)	60, 201, 274, 642, 1657, 1895, 1997
BlpI	GCTNAGC	1 cut(s)	1844
BlsI	GCNGC	7 cut(s)	61, 202, 275, 643, 1658, 1896, 1998
Bme1390I	CCNGG	1 cut(s)	768
Bme18I	GGWCC	2 cut(s)	770, 820
BmeRI	GACNNNNNGTC	1 cut(s)	1219
BmeT110I	CYCGRG	2 cut(s)	981, 1940
BmgT120I	GGNCC	3 cut(s)	770, 820, 1132
BmiI	GGNNCC	5 cut(s)	138, 216, 1474, 1795, 2010
BmrFI	CCNGG	1 cut(s)	768
BmrI	ACTGGG	2 cut(s)	1477, 1984
BmsI	GCATC	4 cut(s)	40, 187, 580, 948
BmuI	ACTGGG	2 cut(s)	1477, 1984
BpiI	GAAGAC	3 cut(s)	327, 1069, 1772
BpmI	CTGGAG	3 cut(s)	861, 1758, 1856
Bpu1102I	GCTNAGC	1 cut(s)	1844
BpuEI	CTTGAG	1 cut(s)	675
BsaHI	GRCGYC	2 cut(s)	215, 1909
BsaJI	CCNNGG	4 cut(s)	607, 645, 1041, 1688
BsaWI	WCCGGW	3 cut(s)	67, 1434, 2011
BsaXI	ACNNNNNCTCC	2 cut(s)	1074, 1104
Bsc4I	CCNNNNNNNGG	3 cut(s)	210, 224, 424
Bse118I	RCCGGY	2 cut(s)	67, 354
Bse1I	ACTGG	7 cut(s)	496, 844, 1472, 1549, 1622, 1910, 1979
Bse3DI	GCAATG	2 cut(s)	419, 643
BseAI	TCCGGA	1 cut(s)	2011
BseBI	CCWGG	1 cut(s)	768
BseDI	CCNNGG	4 cut(s)	607, 645, 1041, 1688
BseGI	GGATG	1 cut(s)	1353
BseLI	CCNNNNNNNGG	3 cut(s)	210, 224, 424
BseMI	GCAATG	2 cut(s)	419, 643
BseMII	CTCAG	6 cut(s)	401, 720, 729, 774, 807, 1635
BseNI	ACTGG	7 cut(s)	496, 844, 1472, 1549, 1622, 1910, 1979
BseRI	GAGGAG	2 cut(s)	156, 159
BseSI	GKGCMC	1 cut(s)	1118
BseXI	GCAGC	5 cut(s)	46, 628, 1643, 1906, 1983
Bsh1236I	CGCG	4 cut(s)	26, 276, 1225, 1227
BshFI	GGCC	2 cut(s)	428, 1134
BshNI	GGYRCC	1 cut(s)	214
BshTI	ACCGGT	1 cut(s)	67
BsiHKAI	GWGCWC	3 cut(s)	24, 1118, 1678
BsiHKCI	CYCGRG	2 cut(s)	981, 1940
BsiSI	CCGG	4 cut(s)	68, 355, 1435, 2012
BsiWI	CGTACG	1 cut(s)	1768
BslFI	GGGAC	5 cut(s)	589, 633, 780, 1550, 1739
BslI	CCNNNNNNNGG	3 cut(s)	210, 224, 424
BsmAI	GTCTC	4 cut(s)	536, 1372, 1808, 1937
BsmFI	GGGAC	5 cut(s)	589, 633, 780, 1550, 1739
BsmI	GAATGC	2 cut(s)	1256, 1415
BsnI	GGCC	2 cut(s)	428, 1134
BsoBI	CYCGRG	2 cut(s)	981, 1940
Bsp1286I	GDGCHC	4 cut(s)	24, 1118, 1153, 1678
Bsp13I	TCCGGA	1 cut(s)	2011
Bsp143I	GATC	8 cut(s)	128, 288, 1177, 1680, 1692, 1793, 1887, 1936
Bsp1720I	GCTNAGC	1 cut(s)	1844
BspANI	GGCC	2 cut(s)	428, 1134
BspCNI	CTCAG	6 cut(s)	400, 721, 728, 775, 808, 1636
BspEI	TCCGGA	1 cut(s)	2011
BspFNI	CGCG	4 cut(s)	26, 276, 1225, 1227
BspHI	TCATGA	3 cut(s)	364, 1755, 1950
BspLI	GGNNCC	5 cut(s)	138, 216, 1474, 1795, 2010
BspMAI	CTGCAG	2 cut(s)	1483, 1531
BspMI	ACCTGC	1 cut(s)	295
BspPI	GGATC	4 cut(s)	1700, 1788, 1801, 1882
BspQI	GCTCTTC	2 cut(s)	108, 1332
BspT107I	GGYRCC	1 cut(s)	214
BspTI	CTTAAG	1 cut(s)	599
BsrDI	GCAATG	2 cut(s)	419, 643
BsrFI	RCCGGY	2 cut(s)	67, 354
BsrI	ACTGG	7 cut(s)	496, 844, 1472, 1549, 1622, 1910, 1979
BssAI	RCCGGY	2 cut(s)	67, 354
BssECI	CCNNGG	4 cut(s)	607, 645, 1041, 1688
BssMI	GATC	8 cut(s)	128, 288, 1177, 1680, 1692, 1793, 1887, 1936
BssNI	GRCGYC	2 cut(s)	215, 1909
BssSI	CACGAG	1 cut(s)	1668
BssT1I	CCWWGG	1 cut(s)	1688
Bst2BI	CACGAG	1 cut(s)	1668
Bst2UI	CCWGG	1 cut(s)	768
Bst4CI	ACNGT	5 cut(s)	87, 1042, 1219, 1258, 1640
Bst6I	CTCTTC	4 cut(s)	108, 873, 1332, 1375
BstACI	GRCGYC	2 cut(s)	215, 1909
BstAFI	CTTAAG	1 cut(s)	599
BstAPI	GCANNNNNTGC	2 cut(s)	59, 1831
BstC8I	GCNNGC	2 cut(s)	24, 278
BstDEI	CTNAG	9 cut(s)	387, 469, 715, 729, 783, 816, 1157, 1644, 1844
BstDSI	CCRYGG	1 cut(s)	1041
BstF5I	GGATG	1 cut(s)	1353
BstFNI	CGCG	4 cut(s)	26, 276, 1225, 1227
BstH2I	RGCGCY	1 cut(s)	218
BstHHI	GCGC	2 cut(s)	217, 1227
BstKTI	GATC	8 cut(s)	131, 291, 1180, 1683, 1695, 1796, 1890, 1939
BstMAI	GTCTC	4 cut(s)	536, 1372, 1808, 1937
BstMBI	GATC	8 cut(s)	128, 288, 1177, 1680, 1692, 1793, 1887, 1936
BstMWI	GCNNNNNNNGC	8 cut(s)	23, 59, 383, 392, 1322, 1673, 1831, 1840
BstNI	CCWGG	1 cut(s)	768
BstNSI	RCATGY	1 cut(s)	626
BstSCI	CCNGG	1 cut(s)	766
BstSFI	CTRYAG	3 cut(s)	1479, 1527, 1577
BstSLI	GKGCMC	1 cut(s)	1118
BstUI	CGCG	4 cut(s)	26, 276, 1225, 1227
BstV1I	GCAGC	5 cut(s)	46, 628, 1643, 1906, 1983
BstV2I	GAAGAC	3 cut(s)	327, 1069, 1772
BstX2I	RGATCY	3 cut(s)	1177, 1692, 1793
BstYI	RGATCY	3 cut(s)	1177, 1692, 1793
BsuI	GTATCC	2 cut(s)	25, 912
BsuRI	GGCC	2 cut(s)	428, 1134
BtgI	CCRYGG	1 cut(s)	1041
BtsCI	GGATG	1 cut(s)	1353
BtsI	GCAGTG	2 cut(s)	1476, 1488
BtsIMutI	CAGTG	5 cut(s)	1254, 1476, 1488, 1556, 1676
BveI	ACCTGC	1 cut(s)	295
Cac8I	GCNNGC	2 cut(s)	24, 278
CciI	TCATGA	3 cut(s)	364, 1755, 1950
CfoI	GCGC	2 cut(s)	217, 1227
Cfr10I	RCCGGY	2 cut(s)	67, 354
Cfr13I	GGNCC	3 cut(s)	770, 820, 1132
CseI	GACGC	1 cut(s)	1898
Csp6I	GTAC	6 cut(s)	1021, 1406, 1554, 1603, 1769, 1861
CspAI	ACCGGT	1 cut(s)	67
CviQI	GTAC	6 cut(s)	1021, 1406, 1554, 1603, 1769, 1861
DdeI	CTNAG	9 cut(s)	387, 469, 715, 729, 783, 816, 1157, 1644, 1844
DinI	GGCGCC	1 cut(s)	216
DpnI	GATC	8 cut(s)	130, 290, 1179, 1682, 1694, 1795, 1889, 1938
DpnII	GATC	8 cut(s)	128, 288, 1177, 1680, 1692, 1793, 1887, 1936
DraIII	CACNNNGTG	1 cut(s)	28
DrdI	GACNNNNNNGTC	1 cut(s)	719
DriI	GACNNNNNGTC	1 cut(s)	1219
DseDI	GACNNNNNNGTC	1 cut(s)	719
Eam1104I	CTCTTC	4 cut(s)	108, 873, 1332, 1375
Eam1105I	GACNNNNNGTC	1 cut(s)	1219
EarI	CTCTTC	4 cut(s)	108, 873, 1332, 1375
EciI	GGCGGA	1 cut(s)	1902
Eco130I	CCWWGG	1 cut(s)	1688
Eco24I	GRGCYC	1 cut(s)	1153
Eco32I	GATATC	3 cut(s)	1273, 1459, 1986
Eco47I	GGWCC	2 cut(s)	770, 820
Eco57I	CTGAAG	1 cut(s)	720
Eco88I	CYCGRG	2 cut(s)	981, 1940
EcoRI	GAATTC	1 cut(s)	829
EcoRII	CCWGG	1 cut(s)	766
EcoRV	GATATC	3 cut(s)	1273, 1459, 1986
EcoT14I	CCWWGG	1 cut(s)	1688
EcoT38I	GRGCYC	1 cut(s)	1153
EgeI	GGCGCC	1 cut(s)	216
EheI	GGCGCC	1 cut(s)	216
ErhI	CCWWGG	1 cut(s)	1688
FaqI	GGGAC	5 cut(s)	589, 633, 780, 1550, 1739
FauI	CCCGC	2 cut(s)	1899, 1960
FauNDI	CATATG	2 cut(s)	448, 2053
FbaI	TGATCA	1 cut(s)	1680
Fnu4HI	GCNGC	7 cut(s)	60, 201, 274, 642, 1657, 1895, 1997
FokI	GGATG	1 cut(s)	1360
FriOI	GRGCYC	1 cut(s)	1153
Fsp4HI	GCNGC	7 cut(s)	60, 201, 274, 642, 1657, 1895, 1997
FspBI	CTAG	3 cut(s)	36, 1653, 1821
GlaI	GCGC	2 cut(s)	216, 1226
GluI	GCNGC	7 cut(s)	60, 201, 274, 642, 1657, 1895, 1997
GsuI	CTGGAG	3 cut(s)	861, 1758, 1856
HaeII	RGCGCY	1 cut(s)	218
HaeIII	GGCC	2 cut(s)	428, 1134
HapII	CCGG	4 cut(s)	68, 355, 1435, 2012
HgaI	GACGC	1 cut(s)	1898
HhaI	GCGC	2 cut(s)	217, 1227
Hin1I	GRCGYC	2 cut(s)	215, 1909
Hin6I	GCGC	2 cut(s)	215, 1225
HinP1I	GCGC	2 cut(s)	215, 1225
HincII	GTYRAC	2 cut(s)	712, 1306
HindII	GTYRAC	2 cut(s)	712, 1306
HindIII	AAGCTT	1 cut(s)	1137
HinfI	GANTC	5 cut(s)	329, 465, 713, 1442, 1961
HpaII	CCGG	4 cut(s)	68, 355, 1435, 2012
HphI	GGTGA	2 cut(s)	1112, 1982
Hpy166II	GTNNAC	5 cut(s)	712, 1116, 1306, 1554, 1603
Hpy8I	GTNNAC	5 cut(s)	712, 1116, 1306, 1554, 1603
Hpy99I	CGWCG	1 cut(s)	82
HpyAV	CCTTC	6 cut(s)	38, 142, 385, 1066, 1753, 1926
HpyCH4III	ACNGT	5 cut(s)	87, 1042, 1219, 1258, 1640
HpyCH4IV	ACGT	4 cut(s)	324, 921, 1513, 1771
HpyF10VI	GCNNNNNNNGC	8 cut(s)	23, 59, 383, 392, 1322, 1673, 1831, 1840
HpyF3I	CTNAG	9 cut(s)	387, 469, 715, 729, 783, 816, 1157, 1644, 1844
HpySE526I	ACGT	4 cut(s)	324, 921, 1513, 1771
Hsp92I	GRCGYC	2 cut(s)	215, 1909
HspAI	GCGC	2 cut(s)	215, 1225
KasI	GGCGCC	1 cut(s)	214
Kpn2I	TCCGGA	1 cut(s)	2011
Ksp22I	TGATCA	1 cut(s)	1680
Kzo9I	GATC	8 cut(s)	128, 288, 1177, 1680, 1692, 1793, 1887, 1936
LguI	GCTCTTC	2 cut(s)	108, 1332
LmnI	GCTCC	5 cut(s)	19, 142, 1082, 1472, 1673
Lsp1109I	GCAGC	5 cut(s)	46, 628, 1643, 1906, 1983
LweI	GCATC	4 cut(s)	40, 187, 580, 948
MaeI	CTAG	3 cut(s)	36, 1653, 1821
MaeII	ACGT	4 cut(s)	324, 921, 1513, 1771
MaeIII	GTNAC	5 cut(s)	63, 476, 1090, 1483, 1970
MalI	GATC	8 cut(s)	130, 290, 1179, 1682, 1694, 1795, 1889, 1938
MboI	GATC	8 cut(s)	128, 288, 1177, 1680, 1692, 1793, 1887, 1936
MflI	RGATCY	3 cut(s)	1177, 1692, 1793
MhlI	GDGCHC	4 cut(s)	24, 1118, 1153, 1678
MluCI	AATT	8 cut(s)	496, 651, 829, 872, 945, 999, 1449, 1704
Mly113I	GGCGCC	1 cut(s)	215
MlyI	GAGTC	1 cut(s)	707
MmeI	TCCRAC	2 cut(s)	1821, 2070
MroI	TCCGGA	1 cut(s)	2011
MroXI	GAANNNNTTC	3 cut(s)	86, 152, 1763
MseI	TTAA	8 cut(s)	144, 360, 534, 600, 1034, 1448, 1707, 1749
MslI	CAYNNNNRTG	1 cut(s)	1481
MspA1I	CMGCKG	1 cut(s)	719
MspCI	CTTAAG	1 cut(s)	599
MspI	CCGG	4 cut(s)	68, 355, 1435, 2012
MspR9I	CCNGG	1 cut(s)	768
Mva1269I	GAATGC	2 cut(s)	1256, 1415
MvaI	CCWGG	1 cut(s)	768
MvnI	CGCG	4 cut(s)	26, 276, 1225, 1227
MwoI	GCNNNNNNNGC	8 cut(s)	23, 59, 383, 392, 1322, 1673, 1831, 1840
NarI	GGCGCC	1 cut(s)	215
NdeI	CATATG	2 cut(s)	448, 2053
NdeII	GATC	8 cut(s)	128, 288, 1177, 1680, 1692, 1793, 1887, 1936
NlaIV	GGNNCC	5 cut(s)	138, 216, 1474, 1795, 2010
NmeAIII	GCCGAG	1 cut(s)	670
NmuCI	GTSAC	4 cut(s)	476, 1090, 1483, 1970
NspI	RCATGY	1 cut(s)	626
OliI	CACNNNNGTG	1 cut(s)	1481
PaeR7I	CTCGAG	2 cut(s)	981, 1940
PagI	TCATGA	3 cut(s)	364, 1755, 1950
PciSI	GCTCTTC	2 cut(s)	108, 1332
PctI	GAATGC	2 cut(s)	1256, 1415
PdmI	GAANNNNTTC	3 cut(s)	86, 152, 1763
PfeI	GAWTC	4 cut(s)	329, 465, 1442, 1961
Pfl23II	CGTACG	1 cut(s)	1768
PfoI	TCCNGGA	1 cut(s)	766
PinAI	ACCGGT	1 cut(s)	67
PkrI	GCNGC	7 cut(s)	61, 202, 275, 643, 1658, 1896, 1998
PleI	GAGTC	1 cut(s)	707
PluTI	GGCGCC	1 cut(s)	218
PpsI	GAGTC	1 cut(s)	707
Psp1406I	AACGTT	1 cut(s)	1513
Psp6I	CCWGG	1 cut(s)	766
PspGI	CCWGG	1 cut(s)	766
PspLI	CGTACG	1 cut(s)	1768
PspN4I	GGNNCC	5 cut(s)	138, 216, 1474, 1795, 2010
PspPI	GGNCC	3 cut(s)	770, 820, 1132
PstI	CTGCAG	2 cut(s)	1483, 1531
PsuI	RGATCY	3 cut(s)	1177, 1692, 1793
PvuII	CAGCTG	1 cut(s)	719
RsaI	GTAC	6 cut(s)	1022, 1407, 1555, 1604, 1770, 1862
RsaNI	GTAC	6 cut(s)	1021, 1406, 1554, 1603, 1769, 1861
RseI	CAYNNNNRTG	1 cut(s)	1481
SapI	GCTCTTC	2 cut(s)	108, 1332
SaqAI	TTAA	8 cut(s)	144, 360, 534, 600, 1034, 1448, 1707, 1749
SatI	GCNGC	7 cut(s)	60, 201, 274, 642, 1657, 1895, 1997
Sau3AI	GATC	8 cut(s)	128, 288, 1177, 1680, 1692, 1793, 1887, 1936
Sau96I	GGNCC	3 cut(s)	770, 820, 1132
SchI	GAGTC	1 cut(s)	707
ScrFI	CCNGG	1 cut(s)	768
SduI	GDGCHC	4 cut(s)	24, 1118, 1153, 1678
SfaNI	GCATC	4 cut(s)	40, 187, 580, 948
SfcI	CTRYAG	3 cut(s)	1479, 1527, 1577
SfoI	GGCGCC	1 cut(s)	216
Sfr274I	CTCGAG	2 cut(s)	981, 1940
SinI	GGWCC	2 cut(s)	770, 820
SlaI	CTCGAG	2 cut(s)	981, 1940
SmiMI	CAYNNNNRTG	1 cut(s)	1481
SmlI	CTYRAG	4 cut(s)	599, 690, 981, 1940
SmoI	CTYRAG	4 cut(s)	599, 690, 981, 1940
SpeI	ACTAGT	1 cut(s)	35
Sse9I	AATT	8 cut(s)	496, 651, 829, 872, 945, 999, 1449, 1704
SspDI	GGCGCC	1 cut(s)	214
SspMI	CTAG	3 cut(s)	36, 1653, 1821
StyD4I	CCNGG	1 cut(s)	766
StyI	CCWWGG	1 cut(s)	1688
TaaI	ACNGT	5 cut(s)	87, 1042, 1219, 1258, 1640
TaiI	ACGT	4 cut(s)	327, 924, 1516, 1774
TaqI	TCGA	3 cut(s)	77, 982, 1941
TaqII	GACCGA	2 cut(s)	599, 1260
TasI	AATT	8 cut(s)	496, 651, 829, 872, 945, 999, 1449, 1704
TatI	WGTACW	1 cut(s)	1602
TauI	GCSGC	2 cut(s)	203, 276
TfiI	GAWTC	4 cut(s)	329, 465, 1442, 1961
Tru1I	TTAA	8 cut(s)	144, 360, 534, 600, 1034, 1448, 1707, 1749
Tru9I	TTAA	8 cut(s)	144, 360, 534, 600, 1034, 1448, 1707, 1749
TscAI	CASTG	5 cut(s)	1261, 1483, 1488, 1556, 1683
TseFI	GTSAC	4 cut(s)	476, 1090, 1483, 1970
TseI	GCWGC	5 cut(s)	59, 641, 1656, 1894, 1996
Tsp45I	GTSAC	4 cut(s)	476, 1090, 1483, 1970
TspGWI	ACGGA	2 cut(s)	172, 1360
TspRI	CASTG	5 cut(s)	1261, 1483, 1488, 1556, 1683
Vha464I	CTTAAG	1 cut(s)	599
VneI	GTGCAC	1 cut(s)	1114
VpaK11BI	GGWCC	2 cut(s)	770, 820
XapI	RAATTY	1 cut(s)	829
XceI	RCATGY	1 cut(s)	626
XhoI	CTCGAG	2 cut(s)	981, 1940
XmnI	GAANNNNTTC	3 cut(s)	86, 152, 1763
XspI	CTAG	3 cut(s)	36, 1653, 1821

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.