MD05G1054400.v1.1

tRNA-dihydrouridine(47) synthase NAD(P)( )

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Reverse (-)
9340703 .. 9353438
12736 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1054400.v1.1.491

Sequence Viewer

Length: 1131 bp
ATGGTAGCCAAGGGCATCGCTCGCGTGAAGAAACAGTTCCTTCGCCCTCCACCCATAAAAGCTCTCTCTAACGACCAGAACGACGCCGCAGCGAAATCGGCAGCAGGCATCTGCCCGGAGGTGGCGAAAAGAGGAGATGTTAGCCGGTGCCCGTACAACGATAAATGCCGGTTCAGCCACGACATAGAGGCTTATAAAGCTCAGAAACCTGAGGATATAGAGGGAGAGTGTCCTTTCATGACTGCCCAGGAGACATGCCCATATGGGTTGGCATGTAGGTTCTTGGGTTCGGATAAAGACGGTGTTGAAGGTGGGGATTTGAGTGCTCGCAGAAGAAGCTCTGAGGTGAATGGATTGACCAAAGATGTTCAAAAGCTTTTGTGGAAGAATAAAATGAAGTTCCCCAAAGCAGACGCCAAACTCAAGGCTCTTGGGCTCGAGCGATGTAGGTCAAGCATCAGAATGGGCACTGCTGAGGTGACATTCATCCGAGGATTTGTTTGTGTTCAGATATGTGGATCACATCCAGACACTGTGGCACACACTGTTGACCTAATAGATCAGGAATGTCAAGTGGACTTTATTGATATAAATATGGGGTGCCCAATTGATATTGTTGTGAACAAGGGTGCTGGGTCAGCTCTTCTTACAAAACCCATGCTGATGAAAGGCATTGTACAAGCAGCTTCTGGTACCGTCGACAGTCCTATAACTATTAAGTGTGCCAGAAAGGCACCTGAGGCTTTGCCAGTACTTGGAAATGGAGACATATTTTCATATGTAGATTGGAACAAGCACCAGGCTGAATGCCCTGAGCTTTCTACATGCATGATTGCTCTTTCTACATGCATGATTGCTCGAGGAGCACTAATTAAGCCTTGGAGTTTTACTGAAATAAAGGAGCAGAGGCACTGGGACATAAGTTCTGGGGAGCGATTAAATATATTGAAGGATTACGTACGTCTTGGCCTTGAACATTGGGGCTCTGACACAAAAGTTGGACTGGTATCTATGTCCCAGGTGTGGAGACAGGTTAGGGTCTGTGAGATGTTGCTTGGAAAGGTTCCAGATGTTTTTACATTTGCACCAAAGCACAAATCCAATTCTTACGACCAAGCAGAAAATGGCTGA

Protein Analysis

377

Amino Acids

41.4

Weight (kDa)

8.51

Isoelectric Point (pI)

38.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH_DUS3L PF25585 36 - 68 5.7e-11 DUS3L CCCH zinc finger domain
Dus PF01207 166 - 241 6.8e-18 Dihydrouridine synthase (Dus)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 195
Acc65I GGTACC 1 cut(s) 692
AccB1I GGYRCC 4 cut(s) 147, 600, 692, 733
AccB7I CCANNNNNTGG 1 cut(s) 755
AccI GTMKAC 1 cut(s) 699
AccII CGCG 1 cut(s) 24
AciI CCGC 1 cut(s) 87
AclWI GGATC 1 cut(s) 526
AcyI GRCGYC 2 cut(s) 84, 414
AfaI GTAC 5 cut(s) 155, 678, 694, 753, 960
AfiI CCNNNNNNNGG 3 cut(s) 121, 755, 1023
AgsI TTSAA 4 cut(s) 308, 371, 949, 974
AjnI CCWGG 3 cut(s) 246, 798, 1017
AluBI AGCT 7 cut(s) 62, 200, 339, 376, 641, 686, 817
AluI AGCT 7 cut(s) 62, 200, 339, 376, 641, 686, 817
Alw21I GWGCWC 2 cut(s) 328, 868
Alw26I GTCTC 3 cut(s) 245, 759, 1021
AlwI GGATC 1 cut(s) 526
AlwNI CAGNNNCTG 2 cut(s) 533, 689
Ama87I CYCGRG 2 cut(s) 437, 858
AoxI GGCC 1 cut(s) 967
ApeKI GCWGC 3 cut(s) 89, 101, 683
Asp700I GAANNNNTTC 1 cut(s) 35
Asp718I GGTACC 1 cut(s) 692
AsuC2I CCSGG 1 cut(s) 116
AsuHPI GGTGA 2 cut(s) 358, 490
AvaI CYCGRG 2 cut(s) 437, 858
AxyI CCTNAGG 2 cut(s) 210, 738
BaeGI GKGCMC 3 cut(s) 152, 470, 605
BanI GGYRCC 4 cut(s) 147, 600, 692, 733
BanII GRGCYC 2 cut(s) 438, 986
Bbv12I GWGCWC 2 cut(s) 328, 868
BbvCI CCTCAGC 1 cut(s) 474
BbvI GCAGC 3 cut(s) 101, 113, 695
BcgI CGANNNNNNTGC 2 cut(s) 78, 112
BciT130I CCWGG 3 cut(s) 248, 800, 1019
BcnI CCSGG 1 cut(s) 116
BcoDI GTCTC 3 cut(s) 245, 759, 1021
BglI GCCNNNNNGGC 1 cut(s) 731
BisI GCNGC 4 cut(s) 87, 90, 102, 684
BlsI GCNGC 4 cut(s) 88, 91, 103, 685
BmcAI AGTACT 1 cut(s) 753
Bme1390I CCNGG 4 cut(s) 116, 248, 800, 1019
BmeT110I CYCGRG 2 cut(s) 437, 858
BmiI GGNNCC 5 cut(s) 149, 602, 694, 735, 1065
BmrFI CCNGG 4 cut(s) 116, 248, 800, 1019
BmrI ACTGGG 1 cut(s) 922
BmsI GCATC 3 cut(s) 24, 117, 465
BmuI ACTGGG 1 cut(s) 922
Bpu10I CCTNAGC 2 cut(s) 474, 813
BpuEI CTTGAG 1 cut(s) 407
BpuMI CCSGG 1 cut(s) 116
BsaAI YACGTR 1 cut(s) 958
BsaHI GRCGYC 2 cut(s) 84, 414
BsaJI CCNNGG 5 cut(s) 9, 246, 490, 878, 1017
Bsc4I CCNNNNNNNGG 3 cut(s) 121, 755, 1023
Bse118I RCCGGY 2 cut(s) 144, 168
Bse1I ACTGG 3 cut(s) 749, 917, 1008
Bse21I CCTNAGG 2 cut(s) 210, 738
BseBI CCWGG 3 cut(s) 248, 800, 1019
BseDI CCNNGG 5 cut(s) 9, 246, 490, 878, 1017
BseGI GGATG 2 cut(s) 486, 523
BseLI CCNNNNNNNGG 3 cut(s) 121, 755, 1023
BseMII CTCAG 6 cut(s) 201, 215, 333, 465, 729, 804
BseNI ACTGG 3 cut(s) 749, 917, 1008
BseRI GAGGAG 2 cut(s) 147, 876
BseSI GKGCMC 3 cut(s) 152, 470, 605
BseXI GCAGC 3 cut(s) 101, 113, 695
BseYI CCCAGC 1 cut(s) 632
Bsh1236I CGCG 1 cut(s) 24
BshFI GGCC 1 cut(s) 969
BshNI GGYRCC 4 cut(s) 147, 600, 692, 733
BsiHKAI GWGCWC 2 cut(s) 328, 868
BsiHKCI CYCGRG 2 cut(s) 437, 858
BsiSI CCGG 3 cut(s) 116, 145, 169
BsiWI CGTACG 1 cut(s) 958
BslFI GGGAC 2 cut(s) 929, 1000
BslI CCNNNNNNNGG 3 cut(s) 121, 755, 1023
BsmAI GTCTC 3 cut(s) 245, 759, 1021
BsmFI GGGAC 2 cut(s) 929, 1000
BsmI GAATGC 1 cut(s) 812
BsnI GGCC 1 cut(s) 969
BsoBI CYCGRG 2 cut(s) 437, 858
Bsp1286I GDGCHC 7 cut(s) 152, 328, 438, 470, 605, 868, 986
Bsp1407I TGTACA 1 cut(s) 676
Bsp143I GATC 2 cut(s) 518, 559
BspACI CCGC 1 cut(s) 87
BspANI GGCC 1 cut(s) 969
BspCNI CTCAG 6 cut(s) 202, 214, 334, 466, 730, 805
BspFNI CGCG 1 cut(s) 24
BspHI TCATGA 1 cut(s) 237
BspLI GGNNCC 5 cut(s) 149, 602, 694, 735, 1065
BspPI GGATC 1 cut(s) 526
BspQI GCTCTTC 1 cut(s) 648
BspT107I GGYRCC 4 cut(s) 147, 600, 692, 733
BsrFI RCCGGY 2 cut(s) 144, 168
BsrGI TGTACA 1 cut(s) 676
BsrI ACTGG 3 cut(s) 749, 917, 1008
BssAI RCCGGY 2 cut(s) 144, 168
BssECI CCNNGG 5 cut(s) 9, 246, 490, 878, 1017
BssMI GATC 2 cut(s) 518, 559
BssNI GRCGYC 2 cut(s) 84, 414
BssT1I CCWWGG 2 cut(s) 9, 878
Bst2UI CCWGG 3 cut(s) 248, 800, 1019
Bst4CI ACNGT 6 cut(s) 36, 302, 535, 547, 697, 704
Bst6I CTCTTC 1 cut(s) 648
BstACI GRCGYC 2 cut(s) 84, 414
BstAUI TGTACA 1 cut(s) 676
BstBAI YACGTR 1 cut(s) 958
BstC8I GCNNGC 3 cut(s) 22, 106, 328
BstDEI CTNAG 6 cut(s) 201, 210, 342, 474, 738, 813
BstF5I GGATG 2 cut(s) 486, 523
BstFNI CGCG 1 cut(s) 24
BstKTI GATC 2 cut(s) 521, 562
BstMAI GTCTC 3 cut(s) 245, 759, 1021
BstMBI GATC 2 cut(s) 518, 559
BstMWI GCNNNNNNNGC 9 cut(s) 21, 98, 174, 197, 336, 638, 731, 740, 863
BstNI CCWGG 3 cut(s) 248, 800, 1019
BstNSI RCATGY 4 cut(s) 258, 276, 828, 849
BstSCI CCNGG 4 cut(s) 114, 246, 798, 1017
BstSLI GKGCMC 3 cut(s) 152, 470, 605
BstSNI TACGTA 1 cut(s) 958
BstUI CGCG 1 cut(s) 24
BstV1I GCAGC 3 cut(s) 101, 113, 695
Bsu36I CCTNAGG 2 cut(s) 210, 738
BsuRI GGCC 1 cut(s) 969
BtgZI GCGATG 1 cut(s) 457
BtsCI GGATG 2 cut(s) 486, 523
BtsI GCAGTG 1 cut(s) 468
BtsIMutI CAGTG 4 cut(s) 468, 531, 543, 910
Cac8I GCNNGC 3 cut(s) 22, 106, 328
CaiI CAGNNNCTG 2 cut(s) 533, 689
CciI TCATGA 1 cut(s) 237
Cfr10I RCCGGY 2 cut(s) 144, 168
CseI GACGC 2 cut(s) 92, 422
Csp6I GTAC 5 cut(s) 154, 677, 693, 752, 959
CviAII CATG 8 cut(s) 238, 255, 273, 658, 825, 829, 846, 850
CviQI GTAC 5 cut(s) 154, 677, 693, 752, 959
DdeI CTNAG 6 cut(s) 201, 210, 342, 474, 738, 813
DpnI GATC 2 cut(s) 520, 561
DpnII GATC 2 cut(s) 518, 559
Eam1104I CTCTTC 1 cut(s) 648
EarI CTCTTC 1 cut(s) 648
Eco105I TACGTA 1 cut(s) 958
Eco130I CCWWGG 2 cut(s) 9, 878
Eco24I GRGCYC 2 cut(s) 438, 986
Eco81I CCTNAGG 2 cut(s) 210, 738
Eco88I CYCGRG 2 cut(s) 437, 858
EcoRII CCWGG 3 cut(s) 246, 798, 1017
EcoT14I CCWWGG 2 cut(s) 9, 878
EcoT22I ATGCAT 2 cut(s) 830, 851
EcoT38I GRGCYC 2 cut(s) 438, 986
ErhI CCWWGG 2 cut(s) 9, 878
FaeI CATG 8 cut(s) 241, 258, 276, 661, 828, 832, 849, 853
FaqI GGGAC 2 cut(s) 929, 1000
FatI CATG 8 cut(s) 237, 254, 272, 657, 824, 828, 845, 849
FauNDI CATATG 2 cut(s) 262, 778
FblI GTMKAC 1 cut(s) 699
Fnu4HI GCNGC 4 cut(s) 87, 90, 102, 684
FokI GGATG 2 cut(s) 473, 510
FriOI GRGCYC 2 cut(s) 438, 986
Fsp4HI GCNGC 4 cut(s) 87, 90, 102, 684
GluI GCNGC 4 cut(s) 87, 90, 102, 684
GsaI CCCAGC 1 cut(s) 636
HaeIII GGCC 1 cut(s) 969
HapII CCGG 3 cut(s) 116, 145, 169
HgaI GACGC 2 cut(s) 92, 422
Hin1I GRCGYC 2 cut(s) 84, 414
Hin1II CATG 8 cut(s) 241, 258, 276, 661, 828, 832, 849, 853
HincII GTYRAC 2 cut(s) 550, 700
HindII GTYRAC 2 cut(s) 550, 700
HindIII AAGCTT 1 cut(s) 374
HpaII CCGG 3 cut(s) 116, 145, 169
HphI GGTGA 2 cut(s) 358, 490
Hpy166II GTNNAC 4 cut(s) 550, 577, 622, 700
Hpy188I TCNGA 7 cut(s) 204, 292, 343, 461, 491, 510, 988
Hpy188III TCNNGA 4 cut(s) 238, 527, 563, 1067
Hpy8I GTNNAC 4 cut(s) 550, 577, 622, 700
Hpy99I CGWCG 2 cut(s) 86, 701
HpyAV CCTTC 3 cut(s) 50, 302, 943
HpyCH4III ACNGT 6 cut(s) 36, 302, 535, 547, 697, 704
HpyCH4IV ACGT 2 cut(s) 957, 961
HpyCH4V TGCA 3 cut(s) 828, 849, 1085
HpyF10VI GCNNNNNNNGC 9 cut(s) 21, 98, 174, 197, 336, 638, 731, 740, 863
HpyF3I CTNAG 6 cut(s) 201, 210, 342, 474, 738, 813
HpySE526I ACGT 2 cut(s) 957, 961
Hsp92I GRCGYC 2 cut(s) 84, 414
Hsp92II CATG 8 cut(s) 241, 258, 276, 661, 828, 832, 849, 853
KpnI GGTACC 1 cut(s) 696
Kzo9I GATC 2 cut(s) 518, 559
LguI GCTCTTC 1 cut(s) 648
LmnI GCTCC 3 cut(s) 863, 901, 931
Lsp1109I GCAGC 3 cut(s) 101, 113, 695
LweI GCATC 3 cut(s) 24, 117, 465
MaeII ACGT 2 cut(s) 957, 961
MaeIII GTNAC 1 cut(s) 478
MalI GATC 2 cut(s) 520, 561
MboI GATC 2 cut(s) 518, 559
MboII GAAGA 4 cut(s) 40, 345, 397, 635
MfeI CAATTG 1 cut(s) 606
MhlI GDGCHC 7 cut(s) 152, 328, 438, 470, 605, 868, 986
MluCI AATT 3 cut(s) 606, 870, 1102
MmeI TCCRAC 1 cut(s) 979
Mph1103I ATGCAT 2 cut(s) 830, 851
MroXI GAANNNNTTC 1 cut(s) 35
MseI TTAA 3 cut(s) 717, 873, 938
MslI CAYNNNNRTG 2 cut(s) 461, 662
MspI CCGG 3 cut(s) 116, 145, 169
MspR9I CCNGG 4 cut(s) 116, 248, 800, 1019
MunI CAATTG 1 cut(s) 606
Mva1269I GAATGC 1 cut(s) 812
MvaI CCWGG 3 cut(s) 248, 800, 1019
MvnI CGCG 1 cut(s) 24
MwoI GCNNNNNNNGC 9 cut(s) 21, 98, 174, 197, 336, 638, 731, 740, 863
NciI CCSGG 1 cut(s) 116
NdeI CATATG 2 cut(s) 262, 778
NdeII GATC 2 cut(s) 518, 559
NlaIII CATG 8 cut(s) 241, 258, 276, 661, 828, 832, 849, 853
NlaIV GGNNCC 5 cut(s) 149, 602, 694, 735, 1065
NmuCI GTSAC 1 cut(s) 478
NsiI ATGCAT 2 cut(s) 830, 851
NspI RCATGY 4 cut(s) 258, 276, 828, 849
PaeR7I CTCGAG 2 cut(s) 437, 858
PagI TCATGA 1 cut(s) 237
PciSI GCTCTTC 1 cut(s) 648
PcsI WCGNNNNNNNCGW 1 cut(s) 78
PctI GAATGC 1 cut(s) 812
PdmI GAANNNNTTC 1 cut(s) 35
Pfl23II CGTACG 1 cut(s) 958
PflMI CCANNNNNTGG 1 cut(s) 755
PkrI GCNGC 4 cut(s) 88, 91, 103, 685
Ppu21I YACGTR 1 cut(s) 958
PsiI TTATAA 1 cut(s) 195
Psp6I CCWGG 3 cut(s) 246, 798, 1017
PspFI CCCAGC 1 cut(s) 632
PspGI CCWGG 3 cut(s) 246, 798, 1017
PspLI CGTACG 1 cut(s) 958
PspN4I GGNNCC 5 cut(s) 149, 602, 694, 735, 1065
PspXI VCTCGAGB 2 cut(s) 437, 858
PstNI CAGNNNCTG 2 cut(s) 533, 689
RsaI GTAC 5 cut(s) 155, 678, 694, 753, 960
RsaNI GTAC 5 cut(s) 154, 677, 693, 752, 959
RseI CAYNNNNRTG 2 cut(s) 461, 662
SalI GTCGAC 1 cut(s) 698
SapI GCTCTTC 1 cut(s) 648
SaqAI TTAA 3 cut(s) 717, 873, 938
SatI GCNGC 4 cut(s) 87, 90, 102, 684
Sau3AI GATC 2 cut(s) 518, 559
ScaI AGTACT 1 cut(s) 753
ScrFI CCNGG 4 cut(s) 116, 248, 800, 1019
SduI GDGCHC 7 cut(s) 152, 328, 438, 470, 605, 868, 986
SfaNI GCATC 3 cut(s) 24, 117, 465
Sfr274I CTCGAG 2 cut(s) 437, 858
SlaI CTCGAG 2 cut(s) 437, 858
SmiMI CAYNNNNRTG 2 cut(s) 461, 662
SmlI CTYRAG 3 cut(s) 422, 437, 858
SmoI CTYRAG 3 cut(s) 422, 437, 858
SnaBI TACGTA 1 cut(s) 958
Sse9I AATT 3 cut(s) 606, 870, 1102
SsiI CCGC 1 cut(s) 87
StyD4I CCNGG 4 cut(s) 114, 246, 798, 1017
StyI CCWWGG 2 cut(s) 9, 878
TaaI ACNGT 6 cut(s) 36, 302, 535, 547, 697, 704
TaiI ACGT 2 cut(s) 960, 964
TaqI TCGA 3 cut(s) 438, 699, 859
TasI AATT 3 cut(s) 606, 870, 1102
TatI WGTACW 2 cut(s) 676, 751
TauI GCSGC 1 cut(s) 89
Tru1I TTAA 3 cut(s) 717, 873, 938
Tru9I TTAA 3 cut(s) 717, 873, 938
TscAI CASTG 4 cut(s) 475, 538, 550, 917
TseFI GTSAC 1 cut(s) 478
TseI GCWGC 3 cut(s) 89, 101, 683
Tsp45I GTSAC 1 cut(s) 478
TspDTI ATGAA 5 cut(s) 226, 410, 475, 680, 765
TspRI CASTG 4 cut(s) 475, 538, 550, 917
Van91I CCANNNNNTGG 1 cut(s) 755
XceI RCATGY 4 cut(s) 258, 276, 828, 849
XcmI CCANNNNNNNNNTGG 1 cut(s) 1121
XhoI CTCGAG 2 cut(s) 437, 858
XmiI GTMKAC 1 cut(s) 699
XmnI GAANNNNTTC 1 cut(s) 35
ZrmI AGTACT 1 cut(s) 753
Zsp2I ATGCAT 2 cut(s) 830, 851
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.