Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004194

Physical Location & Seq

Genomic Coordinates Forward (+)

31536863 .. 31538537

Gene Structure 1675 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24365

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGAACCTGAACCAGAAGCTGCAGCTAACATTGAATTCTCAGAGAATGATAGAAGTTTAAAGACACACCCACGTGAAAAGAAGCTTATTGACTTCAGAGAAAAGTTGTACCTTGCACCTTTGACCACAGTCGGAAATCTTCCATTTCGAAGGGTTTGCAAAGGTTTAGGGGCAGATATAACATGTGGTGAAATGGCAATGTGTACAAATCTTTTGCAGGGTCAAGCGTCGGAATGGGCCCTGCTGAGGAGACATTCATCTGAGGATTTGTTTGGCGTTCAGATATGTGGGGCATATCCAGACACCGTAGCACGCACTGTTGAACTTATAGAACAGGAATGTACCGTAGACTTCATTGATATAAATATGGGGTGCCCAATAGATATTGTTGTGAACAAGGGTGCTGGCTCAGCTCTTCTAACAAAACCAATGCGAATGAAAGGCATTGTGCAAGCAGCTTCTGGTACAGTTGACATTCCTATAACTATCAAGGTCCGCACAGCCTATTTTGAGGGGAAAAATCGCATTGACTCGCTTATTGCTGACATGGGCAACTGGGGAGCCAGCACAGTAACTATATGGTCGATCACGACAGCAACGCTACAGCAAGCTTGCAGATTGGGAATATGTGTACCAGTGTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002943 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016491 GO:0016627 GO:0017150 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0055114 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dus zf-CCCH

Protein Analysis

214

Amino Acids

23.39

Weight (kDa)

5.5

Isoelectric Point (pI)

36.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dus	PF01207	38 - 199	1.3e-28	Dihydrouridine synthase (Dus)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004194)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38890
fragaria_vesca	FvH4_2g10690 FvH4_2g10690 FvH4_2g10690 FvH4_2g10690 FvH4_2g10690 FvH4_2g10690 FvH4_2g10690 FvH4_2g10690
malus_domestica	MD05G1054400.v1.1 MD10G1062000.v1.1
prunus_persica	Prupe.8G082800_v2.0.a1
pyrus_communis	pycom10g04770
rosa_chinensis	RchiOBHm_Chr6g0268371 RchiOBHm_Chr6g0268451 RchiOBHm_Chr6g0268461 RchiOBHm_Chr6g0271651 RchiOBHm_Chr6g0271661
rosa_laevigata	RLG00000013910
rosa_multiflora	Rmu_sc0002404.1_g000009 Rmu_sc0002404.1_g000017 Rmu_sc0007949.1_g000004 Rmu_sc0008184.1_g000007
rosa_roxburghii	Rroxscaffold_7G00199830
rosa_rugosa	Rorug06G0041000 Rorug06G0042100
rosa_samantha	Rh6AG161000 Rh6BG165400 Rh6CG152700 Rh6CG159400 Rh6DG151200
rosa_wichuraiana	Rw6G013920 Rw6G013960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	372
AccI	GTMKAC	1 cut(s)	348
AciI	CCGC	1 cut(s)	496
AcsI	RAATTY	1 cut(s)	35
AcuI	CTGAAG	1 cut(s)	79
AcvI	CACGTG	1 cut(s)	74
AfaI	GTAC	5 cut(s)	110, 205, 343, 466, 633
AfiI	CCNNNNNNNGG	1 cut(s)	246
AflIII	ACRYGT	1 cut(s)	182
AgsI	TTSAA	2 cut(s)	35, 323
AleI	CACNNNNGTG	1 cut(s)	72
AluBI	AGCT	6 cut(s)	20, 26, 85, 413, 458, 611
AluI	AGCT	6 cut(s)	20, 26, 85, 413, 458, 611
Alw26I	GTCTC	1 cut(s)	244
AlwNI	CAGNNNCTG	2 cut(s)	20, 461
AoxI	GGCC	1 cut(s)	237
ApaI	GGGCCC	1 cut(s)	241
ApeKI	GCWGC	3 cut(s)	20, 23, 455
ApoI	RAATTY	1 cut(s)	35
AspS9I	GGNCC	3 cut(s)	237, 238, 493
AsuHPI	GGTGA	1 cut(s)	200
AsuII	TTCGAA	1 cut(s)	148
AvaII	GGWCC	1 cut(s)	493
BaeGI	GKGCMC	2 cut(s)	241, 377
BanI	GGYRCC	1 cut(s)	372
BanII	GRGCYC	1 cut(s)	241
BbrPI	CACGTG	1 cut(s)	74
BbvCI	CCTCAGC	1 cut(s)	245
BbvI	GCAGC	3 cut(s)	7, 35, 467
BcgI	CGANNNNNNTGC	2 cut(s)	138, 172
BcoDI	GTCTC	1 cut(s)	244
BfmI	CTRYAG	2 cut(s)	21, 602
BisI	GCNGC	3 cut(s)	21, 24, 456
BlpI	GCTNAGC	1 cut(s)	409
BlsI	GCNGC	3 cut(s)	22, 25, 457
Bme18I	GGWCC	1 cut(s)	493
BmgT120I	GGNCC	3 cut(s)	237, 238, 493
BmiI	GGNNCC	4 cut(s)	6, 239, 374, 562
BmrI	ACTGGG	1 cut(s)	565
BmuI	ACTGGG	1 cut(s)	565
BoxI	GACNNNNGTC	1 cut(s)	128
Bpu10I	CCTNAGC	1 cut(s)	245
Bpu1102I	GCTNAGC	1 cut(s)	409
Bpu14I	TTCGAA	1 cut(s)	148
BsaAI	YACGTR	1 cut(s)	74
Bsc4I	CCNNNNNNNGG	1 cut(s)	246
Bse1I	ACTGG	2 cut(s)	560, 635
Bse3DI	GCAATG	1 cut(s)	204
BseLI	CCNNNNNNNGG	1 cut(s)	246
BseMI	GCAATG	1 cut(s)	204
BseMII	CTCAG	4 cut(s)	54, 236, 252, 423
BseNI	ACTGG	2 cut(s)	560, 635
BseRI	GAGGAG	1 cut(s)	262
BseSI	GKGCMC	2 cut(s)	241, 377
BseXI	GCAGC	3 cut(s)	7, 35, 467
BshFI	GGCC	1 cut(s)	239
BshNI	GGYRCC	1 cut(s)	372
BslI	CCNNNNNNNGG	1 cut(s)	246
BsmAI	GTCTC	1 cut(s)	244
BsnI	GGCC	1 cut(s)	239
Bsp119I	TTCGAA	1 cut(s)	148
Bsp120I	GGGCCC	1 cut(s)	237
Bsp1286I	GDGCHC	2 cut(s)	241, 377
Bsp1407I	TGTACA	1 cut(s)	203
Bsp143I	GATC	1 cut(s)	585
Bsp1720I	GCTNAGC	1 cut(s)	409
BspACI	CCGC	1 cut(s)	496
BspANI	GGCC	1 cut(s)	239
BspCNI	CTCAG	4 cut(s)	53, 237, 253, 422
BspLI	GGNNCC	4 cut(s)	6, 239, 374, 562
BspMAI	CTGCAG	1 cut(s)	25
BspQI	GCTCTTC	1 cut(s)	420
BspT104I	TTCGAA	1 cut(s)	148
BspT107I	GGYRCC	1 cut(s)	372
BsrDI	GCAATG	1 cut(s)	204
BsrGI	TGTACA	1 cut(s)	203
BsrI	ACTGG	2 cut(s)	560, 635
BssMI	GATC	1 cut(s)	585
Bst4CI	ACNGT	6 cut(s)	130, 307, 319, 346, 469, 571
Bst6I	CTCTTC	1 cut(s)	420
BstAUI	TGTACA	1 cut(s)	203
BstBAI	YACGTR	1 cut(s)	74
BstBI	TTCGAA	1 cut(s)	148
BstC8I	GCNNGC	6 cut(s)	313, 406, 453, 565, 609, 613
BstDEI	CTNAG	4 cut(s)	40, 245, 261, 409
BstKTI	GATC	1 cut(s)	588
BstMAI	GTCTC	1 cut(s)	244
BstMBI	GATC	1 cut(s)	585
BstMWI	GCNNNNNNNGC	1 cut(s)	410
BstNSI	RCATGY	1 cut(s)	186
BstPAI	GACNNNNGTC	1 cut(s)	128
BstSFI	CTRYAG	2 cut(s)	21, 602
BstSLI	GKGCMC	2 cut(s)	241, 377
BstV1I	GCAGC	3 cut(s)	7, 35, 467
BsuRI	GGCC	1 cut(s)	239
BtsIMutI	CAGTG	2 cut(s)	315, 642
Cac8I	GCNNGC	6 cut(s)	313, 406, 453, 565, 609, 613
CaiI	CAGNNNCTG	2 cut(s)	20, 461
Cfr13I	GGNCC	3 cut(s)	237, 238, 493
CseI	GACGC	1 cut(s)	216
Csp6I	GTAC	5 cut(s)	109, 204, 342, 465, 632
CviAII	CATG	2 cut(s)	183, 547
CviQI	GTAC	5 cut(s)	109, 204, 342, 465, 632
DdeI	CTNAG	4 cut(s)	40, 245, 261, 409
DpnI	GATC	1 cut(s)	587
DpnII	GATC	1 cut(s)	585
DraI	TTTAAA	1 cut(s)	60
Eam1104I	CTCTTC	1 cut(s)	420
EarI	CTCTTC	1 cut(s)	420
Eco24I	GRGCYC	1 cut(s)	241
Eco47I	GGWCC	1 cut(s)	493
Eco57I	CTGAAG	1 cut(s)	79
Eco72I	CACGTG	1 cut(s)	74
EcoO109I	RGGNCCY	1 cut(s)	238
EcoRI	GAATTC	1 cut(s)	35
EcoT38I	GRGCYC	1 cut(s)	241
FaeI	CATG	2 cut(s)	186, 550
FatI	CATG	2 cut(s)	182, 546
FblI	GTMKAC	1 cut(s)	348
Fnu4HI	GCNGC	3 cut(s)	21, 24, 456
FriOI	GRGCYC	1 cut(s)	241
Fsp4HI	GCNGC	3 cut(s)	21, 24, 456
GluI	GCNGC	3 cut(s)	21, 24, 456
HaeIII	GGCC	1 cut(s)	239
HgaI	GACGC	1 cut(s)	216
Hin1II	CATG	2 cut(s)	186, 550
HincII	GTYRAC	1 cut(s)	472
HindII	GTYRAC	1 cut(s)	472
HindIII	AAGCTT	2 cut(s)	83, 609
HinfI	GANTC	1 cut(s)	530
HphI	GGTGA	1 cut(s)	200
Hpy166II	GTNNAC	5 cut(s)	204, 349, 394, 472, 632
Hpy188I	TCNGA	6 cut(s)	43, 98, 134, 232, 262, 282
Hpy188III	TCNNGA	2 cut(s)	299, 589
Hpy8I	GTNNAC	5 cut(s)	204, 349, 394, 472, 632
Hpy99I	CGWCG	1 cut(s)	232
HpyAV	CCTTC	1 cut(s)	144
HpyCH4III	ACNGT	6 cut(s)	130, 307, 319, 346, 469, 571
HpyCH4IV	ACGT	1 cut(s)	73
HpyCH4V	TGCA	6 cut(s)	23, 116, 159, 217, 451, 615
HpyF10VI	GCNNNNNNNGC	1 cut(s)	410
HpyF3I	CTNAG	4 cut(s)	40, 245, 261, 409
HpySE526I	ACGT	1 cut(s)	73
Hsp92II	CATG	2 cut(s)	186, 550
Kzo9I	GATC	1 cut(s)	585
LguI	GCTCTTC	1 cut(s)	420
LmnI	GCTCC	1 cut(s)	560
Lsp1109I	GCAGC	3 cut(s)	7, 35, 467
MaeII	ACGT	1 cut(s)	73
MaeIII	GTNAC	1 cut(s)	571
MalI	GATC	1 cut(s)	587
MboI	GATC	1 cut(s)	585
MboII	GAAGA	2 cut(s)	131, 407
MhlI	GDGCHC	2 cut(s)	241, 377
MluCI	AATT	1 cut(s)	35
MlyI	GAGTC	1 cut(s)	524
MmeI	TCCRAC	2 cut(s)	112, 210
MnlI	CCTC	3 cut(s)	240, 256, 505
MseI	TTAA	1 cut(s)	59
MslI	CAYNNNNRTG	1 cut(s)	72
MwoI	GCNNNNNNNGC	1 cut(s)	410
NdeII	GATC	1 cut(s)	585
NlaIII	CATG	2 cut(s)	186, 550
NlaIV	GGNNCC	4 cut(s)	6, 239, 374, 562
NspI	RCATGY	1 cut(s)	186
NspV	TTCGAA	1 cut(s)	148
OliI	CACNNNNGTG	1 cut(s)	72
PciI	ACATGT	1 cut(s)	182
PciSI	GCTCTTC	1 cut(s)	420
PkrI	GCNGC	3 cut(s)	22, 25, 457
PleI	GAGTC	1 cut(s)	524
PmaCI	CACGTG	1 cut(s)	74
PmlI	CACGTG	1 cut(s)	74
PpsI	GAGTC	1 cut(s)	524
Ppu21I	YACGTR	1 cut(s)	74
PscI	ACATGT	1 cut(s)	182
PshAI	GACNNNNGTC	1 cut(s)	128
PspCI	CACGTG	1 cut(s)	74
PspN4I	GGNNCC	4 cut(s)	6, 239, 374, 562
PspOMI	GGGCCC	1 cut(s)	237
PspPI	GGNCC	3 cut(s)	237, 238, 493
PstI	CTGCAG	1 cut(s)	25
PstNI	CAGNNNCTG	2 cut(s)	20, 461
RsaI	GTAC	5 cut(s)	110, 205, 343, 466, 633
RsaNI	GTAC	5 cut(s)	109, 204, 342, 465, 632
RseI	CAYNNNNRTG	1 cut(s)	72
SapI	GCTCTTC	1 cut(s)	420
SaqAI	TTAA	1 cut(s)	59
SatI	GCNGC	3 cut(s)	21, 24, 456
Sau3AI	GATC	1 cut(s)	585
Sau96I	GGNCC	3 cut(s)	237, 238, 493
SchI	GAGTC	1 cut(s)	524
SduI	GDGCHC	2 cut(s)	241, 377
SfcI	CTRYAG	2 cut(s)	21, 602
SfuI	TTCGAA	1 cut(s)	148
SinI	GGWCC	1 cut(s)	493
SmiMI	CAYNNNNRTG	1 cut(s)	72
Sse9I	AATT	1 cut(s)	35
SsiI	CCGC	1 cut(s)	496
TaaI	ACNGT	6 cut(s)	130, 307, 319, 346, 469, 571
TaiI	ACGT	1 cut(s)	76
TaqI	TCGA	2 cut(s)	148, 584
TasI	AATT	1 cut(s)	35
TatI	WGTACW	1 cut(s)	203
Tru1I	TTAA	1 cut(s)	59
Tru9I	TTAA	1 cut(s)	59
TscAI	CASTG	2 cut(s)	322, 642
TseI	GCWGC	3 cut(s)	20, 23, 455
TspDTI	ATGAA	3 cut(s)	246, 343, 452
TspRI	CASTG	2 cut(s)	322, 642
VpaK11BI	GGWCC	1 cut(s)	493
XapI	RAATTY	1 cut(s)	35
XceI	RCATGY	1 cut(s)	186
XmiI	GTMKAC	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.