Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002404.1

Orthogroup ID

OG0004194

Physical Location & Seq

Genomic Coordinates Forward (+)

107868 .. 110860

Gene Structure 2993 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002404.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

atgtcaaaggagaatgggttggtggtttcaaagaattgtgatgttactgatggaaatggctgtagtgaatttcccagtaacatggatgataaagtggagttgactgctgaaataaaagaagagggacgggttgatgaaacgtttccatctgatgaaatggagttgtctgctgaagtaaaagaagagggagctgctaatgaaacatttccatctgacgattctaggccttcaaagaagtcaagatctgtaattgaagagaagtttggttctggtgaagcagattatggaggcgtgagtgctgcaggaaaagttgtggggcaaacctgcatggaacctgaaccagaagctgcagctaacattgaattctcagagaatgatagaagtttaaagacacacccacgtgaaaagaagcttattgacttcagagaaaagttgtaccttgcacctttgaccgcagtcggaaatcttccatttcgaaggggtcaagcttcggaatgggccctgctgaggagacattcatctgaggatttgtttggcgttcagttatgtggggcatatccagacaccgtagcacgcactgttgaacttatagaacaggaatgtaccgtagacttcattgatataaatatggggtgcccaatagatattgttgtgaacaagggtgctggctcatctcttctaacaaaaccaatgcgaatgaaaggcattgtgcaagcagcttctggtacagttgacattcctataactatcaaggtccgcacagcctattttgaggggaaaaatcgcattgactcacttattgctgacatgggtaactggggagccagtgcagtaacaatacacggtcgatcacgacagcaacgctacggcaagcttgcagattgggaatatgtgtaccagtgtgctaaaaaagcccctgattctttgcaagttcttggaaatggagatgtattttcatgtcatcccacaacgactgagctggcgcccaccatcttatttcaatattttgtacgtgatgaccttgagacactaatggcttctgattctgccgctgactgggttaggctctctgagatgttgcttgggaaggttccagatggtttcacatttgcaccaaatcataaatccaatgcttacgaccgagcagaaaacggctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002943 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016491 GO:0016627 GO:0017150 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0055114 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dus zf-CCCH

Protein Analysis

385

Amino Acids

42.25

Weight (kDa)

4.82

Isoelectric Point (pI)

39.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004194)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38890
fragaria_vesca	FvH4_2g10690 FvH4_2g10690 FvH4_2g10690 FvH4_2g10690 FvH4_2g10690 FvH4_2g10690 FvH4_2g10690 FvH4_2g10690
malus_domestica	MD05G1054400.v1.1 MD10G1062000.v1.1
prunus_persica	Prupe.8G082800_v2.0.a1
pyrus_communis	pycom10g04770
rosa_chinensis	RchiOBHm_Chr6g0268371 RchiOBHm_Chr6g0268451 RchiOBHm_Chr6g0268461 RchiOBHm_Chr6g0271651 RchiOBHm_Chr6g0271661
rosa_laevigata	RLG00000013910
rosa_multiflora	Rmu_sc0002404.1_g000009 Rmu_sc0002404.1_g000017 Rmu_sc0007949.1_g000004 Rmu_sc0008184.1_g000007
rosa_roxburghii	Rroxscaffold_7G00199830
rosa_rugosa	Rorug06G0041000 Rorug06G0042100
rosa_samantha	Rh6AG161000 Rh6BG165400 Rh6CG152700 Rh6CG159400 Rh6DG151200
rosa_wichuraiana	Rw6G013920 Rw6G013960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	332
AccB1I	GGYRCC	2 cut(s)	633, 982
AccI	GTMKAC	1 cut(s)	609
AciI	CCGC	3 cut(s)	453, 757, 1050
AclI	AACGTT	1 cut(s)	140
AcsI	RAATTY	2 cut(s)	68, 362
AcuI	CTGAAG	2 cut(s)	192, 406
AcvI	CACGTG	1 cut(s)	401
AcyI	GRCGYC	1 cut(s)	983
AfaI	GTAC	5 cut(s)	437, 604, 727, 896, 1011
AfiI	CCNNNNNNNGG	2 cut(s)	507, 1056
AgsI	TTSAA	6 cut(s)	30, 231, 254, 362, 584, 1001
AjuI	GAANNNNNNNTTGG	2 cut(s)	246, 278
AleI	CACNNNNGTG	1 cut(s)	399
AluBI	AGCT	8 cut(s)	191, 347, 353, 412, 488, 719, 874, 979
AluI	AGCT	8 cut(s)	191, 347, 353, 412, 488, 719, 874, 979
Alw26I	GTCTC	2 cut(s)	505, 1019
AlwNI	CAGNNNCTG	2 cut(s)	347, 722
AoxI	GGCC	2 cut(s)	224, 498
ApaI	GGGCCC	1 cut(s)	502
ApeKI	GCWGC	5 cut(s)	191, 299, 347, 350, 716
ApoI	RAATTY	2 cut(s)	68, 362
Asp700I	GAANNNNTTC	2 cut(s)	141, 204
AspLEI	GCGC	1 cut(s)	985
AspS9I	GGNCC	3 cut(s)	498, 499, 754
AsuHPI	GGTGA	1 cut(s)	284
AsuII	TTCGAA	1 cut(s)	475
AvaII	GGWCC	1 cut(s)	754
BaeGI	GKGCMC	2 cut(s)	502, 638
BanI	GGYRCC	2 cut(s)	633, 982
BanII	GRGCYC	1 cut(s)	502
BbrPI	CACGTG	1 cut(s)	401
BbvCI	CCTCAGC	1 cut(s)	506
BbvI	GCAGC	5 cut(s)	178, 286, 334, 362, 728
BccI	CCATC	5 cut(s)	44, 154, 217, 998, 1091
BceAI	ACGGC	1 cut(s)	883
BcoDI	GTCTC	2 cut(s)	505, 1019
BfaI	CTAG	1 cut(s)	222
BfmI	CTRYAG	3 cut(s)	61, 300, 348
BfoI	RGCGCY	1 cut(s)	986
BfuAI	ACCTGC	1 cut(s)	332
BglII	AGATCT	1 cut(s)	242
BisI	GCNGC	6 cut(s)	192, 300, 348, 351, 717, 1050
BlsI	GCNGC	6 cut(s)	193, 301, 349, 352, 718, 1051
Bme18I	GGWCC	1 cut(s)	754
BmgT120I	GGNCC	3 cut(s)	498, 499, 754
BmiI	GGNNCC	6 cut(s)	333, 500, 635, 823, 984, 1092
BmrI	ACTGGG	3 cut(s)	69, 826, 1066
BmuI	ACTGGG	3 cut(s)	69, 826, 1066
BoxI	GACNNNNGTC	1 cut(s)	455
Bpu10I	CCTNAGC	1 cut(s)	506
Bpu14I	TTCGAA	1 cut(s)	475
BpuEI	CTTGAG	1 cut(s)	1043
BsaAI	YACGTR	2 cut(s)	401, 1013
BsaHI	GRCGYC	1 cut(s)	983
BsaXI	ACNNNNNCTCC	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	2 cut(s)	507, 1056
Bse1I	ACTGG	5 cut(s)	75, 821, 825, 898, 1061
BseGI	GGATG	2 cut(s)	91, 961
BseLI	CCNNNNNNNGG	2 cut(s)	507, 1056
BseMII	CTCAG	5 cut(s)	381, 497, 513, 966, 1062
BseNI	ACTGG	5 cut(s)	75, 821, 825, 898, 1061
BseRI	GAGGAG	1 cut(s)	523
BseSI	GKGCMC	2 cut(s)	502, 638
BseXI	GCAGC	5 cut(s)	178, 286, 334, 362, 728
BsgI	GTGCAG	1 cut(s)	849
Bsh1285I	CGRYCG	2 cut(s)	847, 1141
BshFI	GGCC	2 cut(s)	226, 500
BshNI	GGYRCC	2 cut(s)	633, 982
BsiEI	CGRYCG	2 cut(s)	847, 1141
BslFI	GGGAC	1 cut(s)	138
BslI	CCNNNNNNNGG	2 cut(s)	507, 1056
BsmAI	GTCTC	2 cut(s)	505, 1019
BsmFI	GGGAC	1 cut(s)	138
BsnI	GGCC	2 cut(s)	226, 500
Bsp119I	TTCGAA	1 cut(s)	475
Bsp120I	GGGCCC	1 cut(s)	498
Bsp1286I	GDGCHC	2 cut(s)	502, 638
Bsp143I	GATC	2 cut(s)	242, 848
BspACI	CCGC	3 cut(s)	453, 757, 1050
BspANI	GGCC	2 cut(s)	226, 500
BspCNI	CTCAG	5 cut(s)	380, 498, 514, 967, 1063
BspLI	GGNNCC	6 cut(s)	333, 500, 635, 823, 984, 1092
BspMAI	CTGCAG	2 cut(s)	304, 352
BspMI	ACCTGC	1 cut(s)	332
BspT104I	TTCGAA	1 cut(s)	475
BspT107I	GGYRCC	2 cut(s)	633, 982
BsrI	ACTGG	5 cut(s)	75, 821, 825, 898, 1061
BssMI	GATC	2 cut(s)	242, 848
BssNI	GRCGYC	1 cut(s)	983
Bst4CI	ACNGT	5 cut(s)	568, 580, 607, 730, 845
Bst6I	CTCTTC	4 cut(s)	114, 177, 249, 681
BstACI	GRCGYC	1 cut(s)	983
BstBAI	YACGTR	2 cut(s)	401, 1013
BstBI	TTCGAA	1 cut(s)	475
BstC8I	GCNNGC	6 cut(s)	574, 667, 714, 872, 876, 981
BstDEI	CTNAG	5 cut(s)	367, 506, 522, 975, 1071
BstF5I	GGATG	2 cut(s)	91, 961
BstH2I	RGCGCY	1 cut(s)	986
BstHHI	GCGC	1 cut(s)	985
BstKTI	GATC	2 cut(s)	245, 851
BstMAI	GTCTC	2 cut(s)	505, 1019
BstMBI	GATC	2 cut(s)	242, 848
BstMCI	CGRYCG	2 cut(s)	847, 1141
BstMWI	GCNNNNNNNGC	1 cut(s)	911
BstPAI	GACNNNNGTC	1 cut(s)	455
BstSFI	CTRYAG	3 cut(s)	61, 300, 348
BstSLI	GKGCMC	2 cut(s)	502, 638
BstV1I	GCAGC	5 cut(s)	178, 286, 334, 362, 728
BstX2I	RGATCY	1 cut(s)	242
BstXI	CCANNNNNNTGG	1 cut(s)	82
BstYI	RGATCY	1 cut(s)	242
BsuRI	GGCC	2 cut(s)	226, 500
BtsCI	GGATG	2 cut(s)	91, 961
BtsIMutI	CAGTG	3 cut(s)	576, 832, 905
BveI	ACCTGC	1 cut(s)	332
Cac8I	GCNNGC	6 cut(s)	574, 667, 714, 872, 876, 981
CaiI	CAGNNNCTG	2 cut(s)	347, 722
CfoI	GCGC	1 cut(s)	985
Cfr13I	GGNCC	3 cut(s)	498, 499, 754
Csp6I	GTAC	5 cut(s)	436, 603, 726, 895, 1010
CviAII	CATG	4 cut(s)	82, 328, 808, 957
CviQI	GTAC	5 cut(s)	436, 603, 726, 895, 1010
DdeI	CTNAG	5 cut(s)	367, 506, 522, 975, 1071
DinI	GGCGCC	1 cut(s)	984
DpnI	GATC	2 cut(s)	244, 850
DpnII	GATC	2 cut(s)	242, 848
DraI	TTTAAA	1 cut(s)	387
Eam1104I	CTCTTC	4 cut(s)	114, 177, 249, 681
EarI	CTCTTC	4 cut(s)	114, 177, 249, 681
Eco147I	AGGCCT	1 cut(s)	226
Eco24I	GRGCYC	1 cut(s)	502
Eco47I	GGWCC	1 cut(s)	754
Eco57I	CTGAAG	2 cut(s)	192, 406
Eco72I	CACGTG	1 cut(s)	401
EcoO109I	RGGNCCY	1 cut(s)	499
EcoRI	GAATTC	1 cut(s)	362
EcoT38I	GRGCYC	1 cut(s)	502
EgeI	GGCGCC	1 cut(s)	984
EheI	GGCGCC	1 cut(s)	984
FaeI	CATG	4 cut(s)	85, 331, 811, 960
FaqI	GGGAC	1 cut(s)	138
FatI	CATG	4 cut(s)	81, 327, 807, 956
FblI	GTMKAC	1 cut(s)	609
Fnu4HI	GCNGC	6 cut(s)	192, 300, 348, 351, 717, 1050
FokI	GGATG	2 cut(s)	98, 948
FriOI	GRGCYC	1 cut(s)	502
Fsp4HI	GCNGC	6 cut(s)	192, 300, 348, 351, 717, 1050
FspBI	CTAG	1 cut(s)	222
GlaI	GCGC	1 cut(s)	984
GluI	GCNGC	6 cut(s)	192, 300, 348, 351, 717, 1050
HaeII	RGCGCY	1 cut(s)	986
HaeIII	GGCC	2 cut(s)	226, 500
HhaI	GCGC	1 cut(s)	985
Hin1I	GRCGYC	1 cut(s)	983
Hin1II	CATG	4 cut(s)	85, 331, 811, 960
Hin6I	GCGC	1 cut(s)	983
HinP1I	GCGC	1 cut(s)	983
HincII	GTYRAC	2 cut(s)	102, 733
HindII	GTYRAC	2 cut(s)	102, 733
HindIII	AAGCTT	3 cut(s)	410, 486, 872
HinfI	GANTC	4 cut(s)	218, 791, 920, 1043
HphI	GGTGA	1 cut(s)	284
Hpy166II	GTNNAC	5 cut(s)	102, 610, 655, 733, 895
Hpy188I	TCNGA	9 cut(s)	151, 214, 370, 425, 461, 493, 523, 1042, 1072
Hpy188III	TCNNGA	4 cut(s)	240, 560, 852, 1094
Hpy8I	GTNNAC	5 cut(s)	102, 610, 655, 733, 895
HpyAV	CCTTC	3 cut(s)	237, 471, 1081
HpyCH4III	ACNGT	5 cut(s)	568, 580, 607, 730, 845
HpyCH4IV	ACGT	3 cut(s)	140, 400, 1012
HpyCH4V	TGCA	9 cut(s)	302, 327, 350, 443, 712, 830, 878, 928, 1112
HpyF10VI	GCNNNNNNNGC	1 cut(s)	911
HpyF3I	CTNAG	5 cut(s)	367, 506, 522, 975, 1071
HpySE526I	ACGT	3 cut(s)	140, 400, 1012
Hsp92I	GRCGYC	1 cut(s)	983
Hsp92II	CATG	4 cut(s)	85, 331, 811, 960
HspAI	GCGC	1 cut(s)	983
KasI	GGCGCC	1 cut(s)	982
Kzo9I	GATC	2 cut(s)	242, 848
LmnI	GCTCC	2 cut(s)	188, 821
Lsp1109I	GCAGC	5 cut(s)	178, 286, 334, 362, 728
MaeI	CTAG	1 cut(s)	222
MaeII	ACGT	3 cut(s)	140, 400, 1012
MaeIII	GTNAC	4 cut(s)	43, 77, 812, 832
MalI	GATC	2 cut(s)	244, 850
MboI	GATC	2 cut(s)	242, 848
MboII	GAAGA	5 cut(s)	131, 194, 266, 458, 668
MflI	RGATCY	1 cut(s)	242
MhlI	GDGCHC	2 cut(s)	502, 638
MluCI	AATT	4 cut(s)	34, 68, 249, 362
Mly113I	GGCGCC	1 cut(s)	983
MlyI	GAGTC	1 cut(s)	785
MmeI	TCCRAC	1 cut(s)	439
MnlI	CCTC	6 cut(s)	115, 178, 281, 501, 517, 766
MroXI	GAANNNNTTC	2 cut(s)	141, 204
MseI	TTAA	1 cut(s)	386
MslI	CAYNNNNRTG	1 cut(s)	399
MspA1I	CMGCKG	1 cut(s)	1052
MwoI	GCNNNNNNNGC	1 cut(s)	911
NarI	GGCGCC	1 cut(s)	983
NdeII	GATC	2 cut(s)	242, 848
NlaIII	CATG	4 cut(s)	85, 331, 811, 960
NlaIV	GGNNCC	6 cut(s)	333, 500, 635, 823, 984, 1092
NspV	TTCGAA	1 cut(s)	475
OliI	CACNNNNGTG	1 cut(s)	399
PceI	AGGCCT	1 cut(s)	226
PdmI	GAANNNNTTC	2 cut(s)	141, 204
PfeI	GAWTC	3 cut(s)	218, 920, 1043
PkrI	GCNGC	6 cut(s)	193, 301, 349, 352, 718, 1051
PleI	GAGTC	1 cut(s)	785
PluTI	GGCGCC	1 cut(s)	986
PmaCI	CACGTG	1 cut(s)	401
PmlI	CACGTG	1 cut(s)	401
PpsI	GAGTC	1 cut(s)	785
Ppu21I	YACGTR	2 cut(s)	401, 1013
PshAI	GACNNNNGTC	1 cut(s)	455
Psp1406I	AACGTT	1 cut(s)	140
PspCI	CACGTG	1 cut(s)	401
PspN4I	GGNNCC	6 cut(s)	333, 500, 635, 823, 984, 1092
PspOMI	GGGCCC	1 cut(s)	498
PspPI	GGNCC	3 cut(s)	498, 499, 754
PstI	CTGCAG	2 cut(s)	304, 352
PstNI	CAGNNNCTG	2 cut(s)	347, 722
PsuI	RGATCY	1 cut(s)	242
RsaI	GTAC	5 cut(s)	437, 604, 727, 896, 1011
RsaNI	GTAC	5 cut(s)	436, 603, 726, 895, 1010
RseI	CAYNNNNRTG	1 cut(s)	399
SaqAI	TTAA	1 cut(s)	386
SatI	GCNGC	6 cut(s)	192, 300, 348, 351, 717, 1050
Sau3AI	GATC	2 cut(s)	242, 848
Sau96I	GGNCC	3 cut(s)	498, 499, 754
SchI	GAGTC	1 cut(s)	785
SduI	GDGCHC	2 cut(s)	502, 638
SfcI	CTRYAG	3 cut(s)	61, 300, 348
SfoI	GGCGCC	1 cut(s)	984
SfuI	TTCGAA	1 cut(s)	475
SinI	GGWCC	1 cut(s)	754
SmiMI	CAYNNNNRTG	1 cut(s)	399
SmlI	CTYRAG	1 cut(s)	1022
SmoI	CTYRAG	1 cut(s)	1022
Sse9I	AATT	4 cut(s)	34, 68, 249, 362
SseBI	AGGCCT	1 cut(s)	226
SsiI	CCGC	3 cut(s)	453, 757, 1050
SspDI	GGCGCC	1 cut(s)	982
SspI	AATATT	1 cut(s)	1004
SspMI	CTAG	1 cut(s)	222
StuI	AGGCCT	1 cut(s)	226
TaaI	ACNGT	5 cut(s)	568, 580, 607, 730, 845
TaiI	ACGT	3 cut(s)	143, 403, 1015
TaqI	TCGA	2 cut(s)	475, 847
TaqII	GACCGA	1 cut(s)	1155
TasI	AATT	4 cut(s)	34, 68, 249, 362
TauI	GCSGC	1 cut(s)	1052
TfiI	GAWTC	3 cut(s)	218, 920, 1043
Tru1I	TTAA	1 cut(s)	386
Tru9I	TTAA	1 cut(s)	386
TscAI	CASTG	3 cut(s)	583, 832, 905
TseI	GCWGC	5 cut(s)	191, 299, 347, 350, 716
TspDTI	ATGAA	7 cut(s)	150, 168, 213, 507, 604, 713, 945
TspRI	CASTG	3 cut(s)	583, 832, 905
VpaK11BI	GGWCC	1 cut(s)	754
XapI	RAATTY	2 cut(s)	68, 362
XmiI	GTMKAC	1 cut(s)	609
XmnI	GAANNNNTTC	2 cut(s)	141, 204
XspI	CTAG	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.