Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0004194

Physical Location & Seq

Genomic Coordinates Reverse (-)

44142066 .. 44147833

Gene Structure 5768 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013910

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2130 bp

ATGGGCGACGACTCTCCTGCCGCAACTGGGCCTGGCCCAAAGGTCTCCAACGGCTTGGCGGCGGCTGAGAGGACGCCGGAGGAGCTCGTAGCCAAGTCCATCGCTCCGGTGAAGAAACAGTTCCTTCGCGCTCCTCCCGTCAGACCTTGCTCTAAGGATCAAAACGACGCCGTCTGTGAGGGCAACGCAAAGCCTGCCCAGTCGAACGTAGTGAAGGAGAAGAAGTCCAAGCGGCAGCTCAAGCGTGAACGCCGCGAGGTACAGAAATCGCCCCTCGGTATCTGTCCAGAGGTAGCAAAGAAAGGAGATGTTACTCGGTGTCCATATAATGACAAGTGCCGTTACAGTCACGACATAGAAGCCTATAAGGCTCAGAAACCTGAGGATATAGAGGGAGAATGTCCTTTTATGGCTATCGATGAGCCATGCCCTTATGGTTTGTCATGTAGGTTCTTGGGTACACATAAAAATGGTGTTGCAGATGGAGATGTGAATGCTCGTAGAAGAAGCTCTGAGATGAATGGATTAAGCAAAAATGTTCAAAAGCTTTTGTGGAAAAATAAAATGAAGTTCACCATGGCCGATGCCAAACTCAAGGCTCTTGGTCTCATGGGGCATGCCAATTCAAAAATAATTGCCATGTCAAAGGAGAATGGGTCGGTGGTTTCAAAGAATTGTGATGTTACTGATGGAAATGGCTGTAGTGAATTTCCCAGCAACACAGATGATAAAGTGGAGTTGACTGCTGAAATAAAAGAAGAGGGACGGGTTGATGAAACGTTTCCATCTGATGAAATGGAGTTGTCTGCTGAAGTAAAAGAAGAGGGAGGTGCTACTGAAACATTTCCATCTGACGATTCTAGGCCTTCAAAGAAGTCAAGATCTGTAATTGAAGAGGAGTTTGGTTCTGGTGAAGCAGATAATGGAGGTGTGAGTGCTACAGGAAAAGTTGTTGGGCAAACCTGCATGGAACCTGAACCAGAAGCTGCAGCTAACATTGAGTTCTCAGAGAATGATAGAAGTTTAAAGACACACCCACGTGAAAAGAAGCTTATTGACTTCAGAGAAAAGTTGTACCTTGCACCTTTGACCACAGTCGGAAATCTTCCATTTCGAAGGGTTTGCAAAGGTTTAGGGGCAGATATAACATGTGGTGAAATGGCAATGTGTACAAATCTTTTGCAGGGTCAAGCATCGGAATGGGCCCTGCTGAGGAGACATTCATCTGAGGATTTGTTTGGCGTTCAGATATGTGGGGCATATCCAGACACCGTAGCACGCACTGTTGAACTTATAGAACAGGAATGTACCGTAGACTTCATTGATATAAATATGGGGTGCCCAATAGATATTGTTGTGAACAAGGGTGCTGGCTCAGCTCTTCTAACAAAACCAATGCGAATGAAAGGCATTGTGCAAGCAGCTTCTGGTACAGTTGACATTCCTGTAACTATCAAGGTCCGCACAGCCTATTTTGAGGGGAAAAATCGCATTGACTCACTTATTGCTGACATGGGTAACTGGGGAGCCAGTGCAGTAACAATACATGGTCGATCACGACAGCAACGCTACAGCAAGCTTGCAGATTGGGAATATGTGTACCAATGTGCTAAAAAAGCTCCTGATTCTTTGCAAGTTCTTGGAAATGGAGATGTATTCTCGTATGTAGATTGGAACAAGCACAAGGCTGAGTGCCCTGAACTGTCTTCATTCATGATTGCTCGAGGAGCACTAATTAAGCCTTGGGTTTTTACAGAAATAAAGGAGCAGAGGCACTGGGACATCACTTCTGGGGAGCGATTTAATATTTTGAAGGATTATGTACGTTGTGGCCTTGAACATTGGGGCTCTGACACAAAAGGTGTCGAGACAACTAGGCGTTTTCTGTTAGAATGGCTTAGCTACACTTGTAGATATGTACCTGTTGGTCTTCTAGATGTCATCCCACAACGACTGAGCTGGCGCCCACCTTCTTATTTTGGACGTGATGACCTTGAGACACTAATGGCTTCTGATTCTGCCGCTGACTGGGTTAGGCTCTCTGAGATGTTGCTTGGGAAGGTTCCAGATGGTTTCACATTTGCACCAAAGCATAAATCCAATGCATACGACCGAGCAGAAAACGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002943 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016491 GO:0016627 GO:0017150 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0055114 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dus zf-CCCH

Protein Analysis

710

Amino Acids

78.4

Weight (kDa)

6.19

Isoelectric Point (pI)

43.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH_DUS3L	PF25585	92 - 125	6.9e-11	DUS3L CCCH zinc finger domain
zf-CCCH_DUS3L	PF25585	126 - 157	2.7e-07	DUS3L CCCH zinc finger domain
Dus	PF01207	360 - 614	3.8e-49	Dihydrouridine synthase (Dus)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004194)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38890
fragaria_vesca	FvH4_2g10690 FvH4_2g10690 FvH4_2g10690 FvH4_2g10690 FvH4_2g10690 FvH4_2g10690 FvH4_2g10690 FvH4_2g10690
malus_domestica	MD05G1054400.v1.1 MD10G1062000.v1.1
prunus_persica	Prupe.8G082800_v2.0.a1
pyrus_communis	pycom10g04770
rosa_chinensis	RchiOBHm_Chr6g0268371 RchiOBHm_Chr6g0268451 RchiOBHm_Chr6g0268461 RchiOBHm_Chr6g0271651 RchiOBHm_Chr6g0271661
rosa_laevigata	RLG00000013910
rosa_multiflora	Rmu_sc0002404.1_g000009 Rmu_sc0002404.1_g000017 Rmu_sc0007949.1_g000004 Rmu_sc0008184.1_g000007
rosa_roxburghii	Rroxscaffold_7G00199830
rosa_rugosa	Rorug06G0041000 Rorug06G0042100
rosa_samantha	Rh6AG161000 Rh6BG165400 Rh6CG152700 Rh6CG159400 Rh6DG151200
rosa_wichuraiana	Rw6G013920 Rw6G013960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	971
AccB1I	GGYRCC	2 cut(s)	1338, 1962
AccI	GTMKAC	1 cut(s)	1314
AccII	CGCG	2 cut(s)	129, 255
AciI	CCGC	7 cut(s)	21, 59, 62, 232, 253, 1462, 2022
AclI	AACGTT	1 cut(s)	779
AclWI	GGATC	1 cut(s)	165
AcoI	YGGCCR	1 cut(s)	579
AcsI	RAATTY	1 cut(s)	707
AcuI	CTGAAG	2 cut(s)	831, 1045
AcvI	CACGTG	1 cut(s)	1040
AcyI	GRCGYC	3 cut(s)	74, 168, 1963
AfaI	GTAC	9 cut(s)	261, 460, 1076, 1171, 1309, 1432, 1601, 1824, 1920
AfiI	CCNNNNNNNGG	3 cut(s)	27, 1212, 2028
AflIII	ACRYGT	1 cut(s)	1148
AgsI	TTSAA	8 cut(s)	542, 627, 669, 870, 893, 1289, 1813, 1838
AjiI	CACGTC	1 cut(s)	1985
AjnI	CCWGG	1 cut(s)	31
AjuI	GAANNNNNNNTTGG	2 cut(s)	885, 917
AleI	CACNNNNGTG	1 cut(s)	1038
Alw21I	GWGCWC	2 cut(s)	87, 1732
Alw26I	GTCTC	5 cut(s)	49, 611, 1210, 1862, 1991
AlwI	GGATC	1 cut(s)	165
AlwNI	CAGNNNCTG	2 cut(s)	986, 1427
Ama87I	CYCGRG	1 cut(s)	1722
AoxI	GGCC	6 cut(s)	29, 34, 579, 863, 1203, 1831
ApaI	GGGCCC	1 cut(s)	1207
ApeKI	GCWGC	4 cut(s)	235, 986, 989, 1421
ApoI	RAATTY	1 cut(s)	707
Asp700I	GAANNNNTTC	3 cut(s)	119, 780, 843
AspLEI	GCGC	2 cut(s)	131, 1965
AspS9I	GGNCC	5 cut(s)	29, 35, 1203, 1204, 1459
AsuHPI	GGTGA	4 cut(s)	121, 565, 923, 1166
AsuII	TTCGAA	1 cut(s)	1114
AvaI	CYCGRG	1 cut(s)	1722
AvaII	GGWCC	1 cut(s)	1459
AxyI	CCTNAGG	1 cut(s)	381
BaeGI	GKGCMC	3 cut(s)	1207, 1343, 1697
BanI	GGYRCC	2 cut(s)	1338, 1962
BanII	GRGCYC	3 cut(s)	87, 1207, 1850
BbrPI	CACGTG	1 cut(s)	1040
BbsI	GAAGAC	2 cut(s)	1698, 1922
Bbv12I	GWGCWC	2 cut(s)	87, 1732
BbvCI	CCTCAGC	1 cut(s)	1211
BbvI	GCAGC	4 cut(s)	247, 973, 1001, 1433
BccI	CCATC	6 cut(s)	107, 476, 683, 793, 856, 2063
BceAI	ACGGC	3 cut(s)	67, 155, 324
BcgI	CGANNNNNNTGC	3 cut(s)	33, 1104, 1138
BciT130I	CCWGG	1 cut(s)	33
BcoDI	GTCTC	5 cut(s)	49, 611, 1210, 1862, 1991
BfaI	CTAG	3 cut(s)	861, 1875, 1934
BfmI	CTRYAG	4 cut(s)	700, 939, 987, 1570
BfoI	RGCGCY	1 cut(s)	1966
BfuAI	ACCTGC	1 cut(s)	971
BglI	GCCNNNNNGGC	1 cut(s)	368
BglII	AGATCT	1 cut(s)	881
BlpI	GCTNAGC	2 cut(s)	1375, 1898
Bme1390I	CCNGG	1 cut(s)	33
Bme18I	GGWCC	1 cut(s)	1459
BmeT110I	CYCGRG	1 cut(s)	1722
BmgBI	CACGTC	1 cut(s)	1985
BmgT120I	GGNCC	5 cut(s)	29, 35, 1203, 1204, 1459
BmiI	GGNNCC	6 cut(s)	972, 1205, 1340, 1528, 1964, 2064
BmrFI	CCNGG	1 cut(s)	33
BmrI	ACTGGG	5 cut(s)	36, 193, 1531, 1786, 2038
BmsI	GCATC	2 cut(s)	574, 1202
BmuI	ACTGGG	5 cut(s)	36, 193, 1531, 1786, 2038
BoxI	GACNNNNGTC	1 cut(s)	1094
BpiI	GAAGAC	2 cut(s)	1698, 1922
Bpu10I	CCTNAGC	1 cut(s)	1211
Bpu1102I	GCTNAGC	2 cut(s)	1375, 1898
Bpu14I	TTCGAA	1 cut(s)	1114
BpuEI	CTTGAG	3 cut(s)	224, 578, 2015
Bsa29I	ATCGAT	1 cut(s)	417
BsaAI	YACGTR	1 cut(s)	1040
BsaHI	GRCGYC	3 cut(s)	74, 168, 1963
BsaI	GGTCTC	2 cut(s)	49, 611
BsaJI	CCNNGG	3 cut(s)	274, 576, 1742
BsaWI	WCCGGW	1 cut(s)	106
BsaXI	ACNNNNNCTCC	4 cut(s)	209, 239, 641, 671
Bsc4I	CCNNNNNNNGG	3 cut(s)	27, 1212, 2028
Bse1I	ACTGG	6 cut(s)	31, 199, 1526, 1530, 1781, 2033
Bse21I	CCTNAGG	1 cut(s)	381
Bse3DI	GCAATG	1 cut(s)	1170
BseBI	CCWGG	1 cut(s)	33
BseCI	ATCGAT	1 cut(s)	417
BseDI	CCNNGG	3 cut(s)	274, 576, 1742
BseGI	GGATG	1 cut(s)	1941
BseLI	CCNNNNNNNGG	3 cut(s)	27, 1212, 2028
BseMI	GCAATG	1 cut(s)	1170
BseNI	ACTGG	6 cut(s)	31, 199, 1526, 1530, 1781, 2033
BseRI	GAGGAG	5 cut(s)	95, 123, 911, 1228, 1740
BseSI	GKGCMC	3 cut(s)	1207, 1343, 1697
BseXI	GCAGC	4 cut(s)	247, 973, 1001, 1433
BseYI	CCCAGC	1 cut(s)	713
BsgI	GTGCAG	1 cut(s)	1554
Bsh1236I	CGCG	2 cut(s)	129, 255
Bsh1285I	CGRYCG	1 cut(s)	2113
BshFI	GGCC	6 cut(s)	31, 36, 581, 865, 1205, 1833
BshNI	GGYRCC	2 cut(s)	1338, 1962
BshVI	ATCGAT	1 cut(s)	417
BsiEI	CGRYCG	1 cut(s)	2113
BsiHKAI	GWGCWC	2 cut(s)	87, 1732
BsiHKCI	CYCGRG	1 cut(s)	1722
BsiSI	CCGG	2 cut(s)	77, 107
BslFI	GGGAC	2 cut(s)	777, 1793
BslI	CCNNNNNNNGG	3 cut(s)	27, 1212, 2028
BsmAI	GTCTC	5 cut(s)	49, 611, 1210, 1862, 1991
BsmFI	GGGAC	2 cut(s)	777, 1793
BsmI	GAATGC	1 cut(s)	499
BsnI	GGCC	6 cut(s)	31, 36, 581, 865, 1205, 1833
Bso31I	GGTCTC	2 cut(s)	49, 611
BsoBI	CYCGRG	1 cut(s)	1722
Bsp119I	TTCGAA	1 cut(s)	1114
Bsp120I	GGGCCC	1 cut(s)	1203
Bsp1286I	GDGCHC	6 cut(s)	87, 1207, 1343, 1697, 1732, 1850
Bsp1407I	TGTACA	1 cut(s)	1169
Bsp143I	GATC	3 cut(s)	157, 881, 1553
Bsp1720I	GCTNAGC	2 cut(s)	1375, 1898
Bsp19I	CCATGG	1 cut(s)	576
BspACI	CCGC	7 cut(s)	21, 59, 62, 232, 253, 1462, 2022
BspANI	GGCC	6 cut(s)	31, 36, 581, 865, 1205, 1833
BspDI	ATCGAT	1 cut(s)	417
BspFNI	CGCG	2 cut(s)	129, 255
BspHI	TCATGA	1 cut(s)	1713
BspLI	GGNNCC	6 cut(s)	972, 1205, 1340, 1528, 1964, 2064
BspMAI	CTGCAG	1 cut(s)	991
BspMI	ACCTGC	1 cut(s)	971
BspPI	GGATC	1 cut(s)	165
BspQI	GCTCTTC	1 cut(s)	1386
BspT104I	TTCGAA	1 cut(s)	1114
BspT107I	GGYRCC	2 cut(s)	1338, 1962
BspTNI	GGTCTC	2 cut(s)	49, 611
BsrDI	GCAATG	1 cut(s)	1170
BsrGI	TGTACA	1 cut(s)	1169
BsrI	ACTGG	6 cut(s)	31, 199, 1526, 1530, 1781, 2033
BssECI	CCNNGG	3 cut(s)	274, 576, 1742
BssMI	GATC	3 cut(s)	157, 881, 1553
BssNI	GRCGYC	3 cut(s)	74, 168, 1963
BssT1I	CCWWGG	2 cut(s)	576, 1742
Bst2UI	CCWGG	1 cut(s)	33
Bst4CI	ACNGT	8 cut(s)	120, 347, 1096, 1273, 1285, 1312, 1435, 1704
Bst6I	CTCTTC	4 cut(s)	753, 816, 888, 1386
BstACI	GRCGYC	3 cut(s)	74, 168, 1963
BstAPI	GCANNNNNTGC	1 cut(s)	194
BstAUI	TGTACA	1 cut(s)	1169
BstBAI	YACGTR	1 cut(s)	1040
BstBI	TTCGAA	1 cut(s)	1114
BstC8I	GCNNGC	8 cut(s)	195, 618, 1279, 1372, 1419, 1577, 1581, 1961
BstDSI	CCRYGG	1 cut(s)	576
BstF5I	GGATG	1 cut(s)	1941
BstFNI	CGCG	2 cut(s)	129, 255
BstH2I	RGCGCY	1 cut(s)	1966
BstHHI	GCGC	2 cut(s)	131, 1965
BstKTI	GATC	3 cut(s)	160, 884, 1556
BstMAI	GTCTC	5 cut(s)	49, 611, 1210, 1862, 1991
BstMBI	GATC	3 cut(s)	157, 881, 1553
BstMCI	CGRYCG	1 cut(s)	2113
BstMWI	GCNNNNNNNGC	7 cut(s)	82, 194, 241, 368, 1376, 1616, 1727
BstNI	CCWGG	1 cut(s)	33
BstNSI	RCATGY	2 cut(s)	620, 1152
BstPAI	GACNNNNGTC	1 cut(s)	1094
BstSCI	CCNGG	1 cut(s)	31
BstSFI	CTRYAG	4 cut(s)	700, 939, 987, 1570
BstSLI	GKGCMC	3 cut(s)	1207, 1343, 1697
BstUI	CGCG	2 cut(s)	129, 255
BstV1I	GCAGC	4 cut(s)	247, 973, 1001, 1433
BstV2I	GAAGAC	2 cut(s)	1698, 1922
BstX2I	RGATCY	1 cut(s)	881
BstXI	CCANNNNNNTGG	1 cut(s)	55
BstYI	RGATCY	1 cut(s)	881
Bsu15I	ATCGAT	1 cut(s)	417
Bsu36I	CCTNAGG	1 cut(s)	381
BsuRI	GGCC	6 cut(s)	31, 36, 581, 865, 1205, 1833
BsuTUI	ATCGAT	1 cut(s)	417
BtgI	CCRYGG	1 cut(s)	576
BtgZI	GCGATG	1 cut(s)	85
BtrI	CACGTC	1 cut(s)	1985
BtsCI	GGATG	1 cut(s)	1941
BtsIMutI	CAGTG	3 cut(s)	1281, 1537, 1774
BveI	ACCTGC	1 cut(s)	971
Cac8I	GCNNGC	8 cut(s)	195, 618, 1279, 1372, 1419, 1577, 1581, 1961
CaiI	CAGNNNCTG	2 cut(s)	986, 1427
CciI	TCATGA	1 cut(s)	1713
CfoI	GCGC	2 cut(s)	131, 1965
Cfr13I	GGNCC	5 cut(s)	29, 35, 1203, 1204, 1459
ClaI	ATCGAT	1 cut(s)	417
CseI	GACGC	2 cut(s)	82, 176
Csp6I	GTAC	9 cut(s)	260, 459, 1075, 1170, 1308, 1431, 1600, 1823, 1919
CviQI	GTAC	9 cut(s)	260, 459, 1075, 1170, 1308, 1431, 1600, 1823, 1919
DinI	GGCGCC	1 cut(s)	1964
DpnI	GATC	3 cut(s)	159, 883, 1555
DpnII	GATC	3 cut(s)	157, 881, 1553
DraI	TTTAAA	1 cut(s)	1026
EaeI	YGGCCR	1 cut(s)	579
Eam1104I	CTCTTC	4 cut(s)	753, 816, 888, 1386
EarI	CTCTTC	4 cut(s)	753, 816, 888, 1386
Ecl136II	GAGCTC	1 cut(s)	85
Eco130I	CCWWGG	2 cut(s)	576, 1742
Eco147I	AGGCCT	1 cut(s)	865
Eco24I	GRGCYC	3 cut(s)	87, 1207, 1850
Eco31I	GGTCTC	2 cut(s)	49, 611
Eco47I	GGWCC	1 cut(s)	1459
Eco53kI	GAGCTC	1 cut(s)	85
Eco57I	CTGAAG	2 cut(s)	831, 1045
Eco72I	CACGTG	1 cut(s)	1040
Eco81I	CCTNAGG	1 cut(s)	381
Eco88I	CYCGRG	1 cut(s)	1722
EcoICRI	GAGCTC	1 cut(s)	85
EcoO109I	RGGNCCY	1 cut(s)	1204
EcoRII	CCWGG	1 cut(s)	31
EcoT14I	CCWWGG	2 cut(s)	576, 1742
EcoT22I	ATGCAT	1 cut(s)	2107
EcoT38I	GRGCYC	3 cut(s)	87, 1207, 1850
EgeI	GGCGCC	1 cut(s)	1964
EheI	GGCGCC	1 cut(s)	1964
ErhI	CCWWGG	2 cut(s)	576, 1742
FaqI	GGGAC	2 cut(s)	777, 1793
FblI	GTMKAC	1 cut(s)	1314
FokI	GGATG	1 cut(s)	1928
FriOI	GRGCYC	3 cut(s)	87, 1207, 1850
FspBI	CTAG	3 cut(s)	861, 1875, 1934
GlaI	GCGC	2 cut(s)	130, 1964
GsaI	CCCAGC	1 cut(s)	717
HaeII	RGCGCY	1 cut(s)	1966
HaeIII	GGCC	6 cut(s)	31, 36, 581, 865, 1205, 1833
HapII	CCGG	2 cut(s)	77, 107
HgaI	GACGC	2 cut(s)	82, 176
HhaI	GCGC	2 cut(s)	131, 1965
Hin1I	GRCGYC	3 cut(s)	74, 168, 1963
Hin6I	GCGC	2 cut(s)	129, 1963
HinP1I	GCGC	2 cut(s)	129, 1963
HincII	GTYRAC	2 cut(s)	741, 1438
HindII	GTYRAC	2 cut(s)	741, 1438
HindIII	AAGCTT	3 cut(s)	545, 1049, 1577
HinfI	GANTC	5 cut(s)	11, 857, 1496, 1625, 2015
HpaII	CCGG	2 cut(s)	77, 107
HphI	GGTGA	4 cut(s)	121, 565, 923, 1166
Hpy166II	GTNNAC	9 cut(s)	248, 461, 573, 741, 1170, 1315, 1360, 1438, 1600
Hpy8I	GTNNAC	9 cut(s)	248, 461, 573, 741, 1170, 1315, 1360, 1438, 1600
Hpy99I	CGWCG	2 cut(s)	11, 170
HpyAV	CCTTC	7 cut(s)	134, 208, 876, 1110, 1807, 1980, 2053
HpyCH4III	ACNGT	8 cut(s)	120, 347, 1096, 1273, 1285, 1312, 1435, 1704
HpyCH4IV	ACGT	5 cut(s)	207, 779, 1039, 1825, 1984
HpyF10VI	GCNNNNNNNGC	7 cut(s)	82, 194, 241, 368, 1376, 1616, 1727
HpySE526I	ACGT	5 cut(s)	207, 779, 1039, 1825, 1984
Hsp92I	GRCGYC	3 cut(s)	74, 168, 1963
HspAI	GCGC	2 cut(s)	129, 1963
KasI	GGCGCC	1 cut(s)	1962
Kzo9I	GATC	3 cut(s)	157, 881, 1553
LguI	GCTCTTC	1 cut(s)	1386
LmnI	GCTCC	8 cut(s)	82, 109, 136, 1526, 1624, 1727, 1765, 1795
Lsp1109I	GCAGC	4 cut(s)	247, 973, 1001, 1433
LweI	GCATC	2 cut(s)	574, 1202
MaeI	CTAG	3 cut(s)	861, 1875, 1934
MaeII	ACGT	5 cut(s)	207, 779, 1039, 1825, 1984
MaeIII	GTNAC	7 cut(s)	310, 341, 347, 682, 1447, 1517, 1537
MalI	GATC	3 cut(s)	159, 883, 1555
MboI	GATC	3 cut(s)	157, 881, 1553
MflI	RGATCY	1 cut(s)	881
MhlI	GDGCHC	6 cut(s)	87, 1207, 1343, 1697, 1732, 1850
MluCI	AATT	6 cut(s)	622, 633, 673, 707, 888, 1734
Mly113I	GGCGCC	1 cut(s)	1963
MlyI	GAGTC	2 cut(s)	5, 1490
MmeI	TCCRAC	2 cut(s)	72, 1078
Mph1103I	ATGCAT	1 cut(s)	2107
MroXI	GAANNNNTTC	3 cut(s)	119, 780, 843
MseI	TTAA	4 cut(s)	527, 1025, 1737, 1803
MslI	CAYNNNNRTG	3 cut(s)	468, 1038, 1198
MspA1I	CMGCKG	1 cut(s)	2024
MspI	CCGG	2 cut(s)	77, 107
MspR9I	CCNGG	1 cut(s)	33
Mva1269I	GAATGC	1 cut(s)	499
MvaI	CCWGG	1 cut(s)	33
MvnI	CGCG	2 cut(s)	129, 255
MwoI	GCNNNNNNNGC	7 cut(s)	82, 194, 241, 368, 1376, 1616, 1727
NarI	GGCGCC	1 cut(s)	1963
NcoI	CCATGG	1 cut(s)	576
NdeII	GATC	3 cut(s)	157, 881, 1553
NlaIV	GGNNCC	6 cut(s)	972, 1205, 1340, 1528, 1964, 2064
NmuCI	GTSAC	1 cut(s)	347
NsiI	ATGCAT	1 cut(s)	2107
NspI	RCATGY	2 cut(s)	620, 1152
NspV	TTCGAA	1 cut(s)	1114
OliI	CACNNNNGTG	1 cut(s)	1038
PaeI	GCATGC	1 cut(s)	620
PaeR7I	CTCGAG	1 cut(s)	1722
PagI	TCATGA	1 cut(s)	1713
PceI	AGGCCT	1 cut(s)	865
PciI	ACATGT	1 cut(s)	1148
PciSI	GCTCTTC	1 cut(s)	1386
PctI	GAATGC	1 cut(s)	499
PdmI	GAANNNNTTC	3 cut(s)	119, 780, 843
PfeI	GAWTC	3 cut(s)	857, 1625, 2015
PflFI	GACNNNGTC	1 cut(s)	170
PleI	GAGTC	2 cut(s)	5, 1490
PluTI	GGCGCC	1 cut(s)	1966
PmaCI	CACGTG	1 cut(s)	1040
PmlI	CACGTG	1 cut(s)	1040
PpsI	GAGTC	2 cut(s)	5, 1490
Ppu21I	YACGTR	1 cut(s)	1040
PscI	ACATGT	1 cut(s)	1148
PshAI	GACNNNNGTC	1 cut(s)	1094
Psp124BI	GAGCTC	1 cut(s)	87
Psp1406I	AACGTT	1 cut(s)	779
Psp6I	CCWGG	1 cut(s)	31
PspCI	CACGTG	1 cut(s)	1040
PspFI	CCCAGC	1 cut(s)	713
PspGI	CCWGG	1 cut(s)	31
PspN4I	GGNNCC	6 cut(s)	972, 1205, 1340, 1528, 1964, 2064
PspOMI	GGGCCC	1 cut(s)	1203
PspPI	GGNCC	5 cut(s)	29, 35, 1203, 1204, 1459
PspXI	VCTCGAGB	1 cut(s)	1722
PstI	CTGCAG	1 cut(s)	991
PstNI	CAGNNNCTG	2 cut(s)	986, 1427
PsuI	RGATCY	1 cut(s)	881
PsyI	GACNNNGTC	1 cut(s)	170
RsaI	GTAC	9 cut(s)	261, 460, 1076, 1171, 1309, 1432, 1601, 1824, 1920
RsaNI	GTAC	9 cut(s)	260, 459, 1075, 1170, 1308, 1431, 1600, 1823, 1919
RseI	CAYNNNNRTG	3 cut(s)	468, 1038, 1198
SacI	GAGCTC	1 cut(s)	87
SapI	GCTCTTC	1 cut(s)	1386
SaqAI	TTAA	4 cut(s)	527, 1025, 1737, 1803
Sau3AI	GATC	3 cut(s)	157, 881, 1553
Sau96I	GGNCC	5 cut(s)	29, 35, 1203, 1204, 1459
SchI	GAGTC	2 cut(s)	5, 1490
ScrFI	CCNGG	1 cut(s)	33
SduI	GDGCHC	6 cut(s)	87, 1207, 1343, 1697, 1732, 1850
SfaNI	GCATC	2 cut(s)	574, 1202
SfcI	CTRYAG	4 cut(s)	700, 939, 987, 1570
SfoI	GGCGCC	1 cut(s)	1964
Sfr274I	CTCGAG	1 cut(s)	1722
SfuI	TTCGAA	1 cut(s)	1114
SinI	GGWCC	1 cut(s)	1459
SlaI	CTCGAG	1 cut(s)	1722
SmiMI	CAYNNNNRTG	3 cut(s)	468, 1038, 1198
SmlI	CTYRAG	4 cut(s)	239, 593, 1722, 1994
SmoI	CTYRAG	4 cut(s)	239, 593, 1722, 1994
SphI	GCATGC	1 cut(s)	620
Sse9I	AATT	6 cut(s)	622, 633, 673, 707, 888, 1734
SseBI	AGGCCT	1 cut(s)	865
SsiI	CCGC	7 cut(s)	21, 59, 62, 232, 253, 1462, 2022
SspDI	GGCGCC	1 cut(s)	1962
SspI	AATATT	1 cut(s)	1807
SspMI	CTAG	3 cut(s)	861, 1875, 1934
SstI	GAGCTC	1 cut(s)	87
StuI	AGGCCT	1 cut(s)	865
StyD4I	CCNGG	1 cut(s)	31
StyI	CCWWGG	2 cut(s)	576, 1742
TaaI	ACNGT	8 cut(s)	120, 347, 1096, 1273, 1285, 1312, 1435, 1704
TaiI	ACGT	5 cut(s)	210, 782, 1042, 1828, 1987
TaqI	TCGA	6 cut(s)	203, 417, 1114, 1552, 1723, 1866
TaqII	GACCGA	1 cut(s)	2127
TasI	AATT	6 cut(s)	622, 633, 673, 707, 888, 1734
TatI	WGTACW	1 cut(s)	1169
TauI	GCSGC	6 cut(s)	23, 62, 65, 235, 255, 2024
TfiI	GAWTC	3 cut(s)	857, 1625, 2015
Tru1I	TTAA	4 cut(s)	527, 1025, 1737, 1803
Tru9I	TTAA	4 cut(s)	527, 1025, 1737, 1803
TscAI	CASTG	3 cut(s)	1288, 1537, 1781
TseFI	GTSAC	1 cut(s)	347
TseI	GCWGC	4 cut(s)	235, 986, 989, 1421
Tsp45I	GTSAC	1 cut(s)	347
TspDTI	ATGAA	9 cut(s)	533, 581, 789, 807, 1212, 1309, 1418, 1698, 1702
TspRI	CASTG	3 cut(s)	1288, 1537, 1781
Tth111I	GACNNNGTC	1 cut(s)	170
VpaK11BI	GGWCC	1 cut(s)	1459
XapI	RAATTY	1 cut(s)	707
XbaI	TCTAGA	1 cut(s)	1933
XceI	RCATGY	2 cut(s)	620, 1152
XhoI	CTCGAG	1 cut(s)	1722
XmiI	GTMKAC	1 cut(s)	1314
XmnI	GAANNNNTTC	3 cut(s)	119, 780, 843
XspI	CTAG	3 cut(s)	861, 1875, 1934
Zsp2I	ATGCAT	1 cut(s)	2107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.