Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0004194

Physical Location & Seq

Genomic Coordinates Forward (+)

25711405 .. 25717817

Gene Structure 6413 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G013920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2130 bp

ATGGGCGACGACACTCCTGCAGCAACTGGAACGGGCCCAGAGGTCTCCAACGGCGTGGCGGCGGCGGCGGCGGCTGAGAGGACGCCGGAGGAGCTCGTAGCCAAGTCCATCGCTCCGGTGAAGAAACAGTACCTTCGCCCTCCTCCCGTCAGACCTTGCTCTAAGGATCAAAACGACGCCGTCTGTGAGGGCAACGCGAAGCCTGCACAGTCGAACATAGTGAAGGAGAAGAAGTCCAAGCGGCAGCTTAAGCGTGAACGCCGCGAGGTACAGAAATCGCCCCTCGGTATCTGTCCAGAGGTAGCAAAGAAAGGAGATGTTAGTCGGTGTCCATATAATGATAAGTGCCGCTACAGCCACGACATAGAAGCCTATAAGGCTCAGCCATGCCCTTATGGTTTGTCATGTAGGTTCTTGGGTACACATAGAAATGGTGTTGCAGATGGAGATGTGAATGCTCGTAGAAGAAGCTCTGAGATGAATGGATTAAGCAAAAATGTTCAAAAGCTTTTGTGGAAAAATAAAATGAAGTTCACCAAGGCTGATACCAAACTTAAGGCTCTTGGTCTCATGGGGCATGCCAATTCAAAAATAATTGCCATGTCAAAGGAGAATGGGTCGGTGGTTTCAAAGAATTGTGATGTTACTGATGGAAATGGCTGTAGTGAATTTCCCAGTAACACAGATGATAAAGTGGAGTTGACTGCTGAAATAAAAGAAGAGGGACGTGTTGATGAAAAGTTTCCATCTGATGAAATGGAGTTGTCTGCTGAAGTGAAAGAAGAGGGAGCTGCTAATGAAACATTTCCATCTGACGATTCTAGGCCTTCAAAGAAGTCAAGATCTGTAATTGAAGAGGAGTTTGGTTCTGGTGAAGCAGATTCTAGGCCTTCAAAGAAGTCAAGATCTGTAATTGAAGAGGAGTTTGGTGTGAGAGCTGCAGGAAAAGTTGTTGGGCAAACCTGCACAGAACCTGAACCAGAAGCTGCAGCTAATATTGAATTCTCAGAGAATGATAGCAGTTTAAAGTCACACCCACGTGAAAAGAAGCTTATTGACTTCAGAGAAAAGTTGTACCTTGCACCTCTGACCACAGTCGGAAATCTTCCATTTCGAAGGGTTTGCAAAGGTTTAGGGGCAGATATAACATGTGGTGAAATGGCAATGTGTACAAATCTTTTGCAGGGTCAAGCGTCGGAATGGGCCTTGCTGAGGAGACATTCATCTGAGGATTTGTTTGGTGTTCAGATATGTGGGGCATATCCAGACACTGTAGCACGCACTGTTGAACTTATAGAACAGGAATGTACCGTAGACTTCATTGATATAAATATGGGGTGCCCAATAGATATTGTTGTGAACAAGGGTGCTGGCTCAGCTCTTCTAACAAAACCAATGCGAATGAAAGGCATTGTGCAAGCAGCTTCTGGTACAGTTGACATTCCTATGACTATCAAGGTCCGCACAGCCTATTTTGAGGGGAAAAATCGCATTGACTCGCTTATTGCTGACATGGGCAACTGGGGAGCCAGTGCAGTAACAATACATGGTCGATCACGACAGCAACGCTACAGCAAGCTTGCAGATTGGGAGTATGTGTACCAGTGTGCTAAAAAAGCCCCTGATTCTTTGCAAGTCCTTGGAAATGGAGATGTATTTTCGTATGTAGATTGGAACAAGCACAAGGCTGAGTGCCCTGAACTGTCTTCATGCATGATTGCTCGAGGAGCACTAATTAAGCCTTGGATTTTTACAGAAATAAAGGAGCAGAGGCACTGGGACATCACTTCTGGGGAGCGATTTAATATTTTGAAGGATTATGTACGTTGTGGCCTTGAACATTGGGGCTCTGACACAAAAGGTGTCGAGACAACTAGGCGTTTTCTGTTAGAATGGCTTAGCTACACTTGTAGATATGTACCTGTTGGTCTTCTAGATGTCATCCCACAAAGACTGAGCTGGCGCCCACCATCTTATTTTGGACGTGATGACCTTGAGACACTAATGGCTTCTGATTCTGCAGCTGACTGGGTTAGGCTCTCTGAGATGTTGCTTGGGAAGGTTCCAGATGGTTTCACATTTGCACCAAAGCATAAATCCAATGCTTACGACCGAGCAGAAAACGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002943 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016491 GO:0016627 GO:0017150 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0055114 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dus zf-CCCH

Protein Analysis

709

Amino Acids

78.49

Weight (kDa)

7.41

Isoelectric Point (pI)

44.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH_DUS3L	PF25585	95 - 128	1.8e-10	DUS3L CCCH zinc finger domain
Dus	PF01207	360 - 614	2e-48	Dihydrouridine synthase (Dus)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004194)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38890
fragaria_vesca	FvH4_2g10690 FvH4_2g10690 FvH4_2g10690 FvH4_2g10690 FvH4_2g10690 FvH4_2g10690 FvH4_2g10690 FvH4_2g10690
malus_domestica	MD05G1054400.v1.1 MD10G1062000.v1.1
prunus_persica	Prupe.8G082800_v2.0.a1
pyrus_communis	pycom10g04770
rosa_chinensis	RchiOBHm_Chr6g0268371 RchiOBHm_Chr6g0268451 RchiOBHm_Chr6g0268461 RchiOBHm_Chr6g0271651 RchiOBHm_Chr6g0271661
rosa_laevigata	RLG00000013910
rosa_multiflora	Rmu_sc0002404.1_g000009 Rmu_sc0002404.1_g000017 Rmu_sc0007949.1_g000004 Rmu_sc0008184.1_g000007
rosa_roxburghii	Rroxscaffold_7G00199830
rosa_rugosa	Rorug06G0041000 Rorug06G0042100
rosa_samantha	Rh6AG161000 Rh6BG165400 Rh6CG152700 Rh6CG159400 Rh6DG151200
rosa_wichuraiana	Rw6G013920 Rw6G013960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	971
AccB1I	GGYRCC	2 cut(s)	1338, 1962
AccI	GTMKAC	1 cut(s)	1314
AccII	CGCG	2 cut(s)	197, 264
AciI	CCGC	9 cut(s)	59, 62, 65, 68, 71, 241, 262, 349, 1462
AclWI	GGATC	1 cut(s)	174
AcsI	RAATTY	2 cut(s)	668, 1001
AcuI	CTGAAG	2 cut(s)	792, 1045
AcvI	CACGTG	1 cut(s)	1040
AcyI	GRCGYC	3 cut(s)	83, 177, 1963
AfiI	CCNNNNNNNGG	1 cut(s)	1212
AflII	CTTAAG	2 cut(s)	248, 554
AflIII	ACRYGT	2 cut(s)	727, 1148
AjiI	CACGTC	2 cut(s)	728, 1985
AjuI	GAANNNNNNNTTGG	4 cut(s)	846, 878, 909, 941
AleI	CACNNNNGTG	1 cut(s)	1038
Alw21I	GWGCWC	2 cut(s)	96, 1732
Alw26I	GTCTC	5 cut(s)	49, 572, 1210, 1862, 1991
AlwI	GGATC	1 cut(s)	174
AlwNI	CAGNNNCTG	5 cut(s)	26, 974, 986, 1271, 1427
Ama87I	CYCGRG	1 cut(s)	1722
AoxI	GGCC	5 cut(s)	34, 824, 887, 1203, 1831
ApaI	GGGCCC	1 cut(s)	38
ApeKI	GCWGC	8 cut(s)	20, 244, 791, 938, 986, 989, 1421, 2021
ApoI	RAATTY	2 cut(s)	668, 1001
Asp700I	GAANNNNTTC	2 cut(s)	741, 804
AspLEI	GCGC	1 cut(s)	1965
AspS9I	GGNCC	4 cut(s)	34, 35, 1203, 1459
AsuHPI	GGTGA	4 cut(s)	130, 526, 884, 1166
AsuII	TTCGAA	1 cut(s)	1114
AvaI	CYCGRG	1 cut(s)	1722
AvaII	GGWCC	1 cut(s)	1459
BaeGI	GKGCMC	3 cut(s)	38, 1343, 1697
BanI	GGYRCC	2 cut(s)	1338, 1962
BanII	GRGCYC	3 cut(s)	38, 96, 1850
BarI	GAAGNNNNNNTAC	2 cut(s)	113, 145
BbrPI	CACGTG	1 cut(s)	1040
BbsI	GAAGAC	2 cut(s)	1698, 1922
Bbv12I	GWGCWC	2 cut(s)	96, 1732
BbvCI	CCTCAGC	1 cut(s)	1211
BbvI	GCAGC	8 cut(s)	32, 256, 778, 925, 973, 1001, 1433, 2033
BccI	CCATC	7 cut(s)	116, 437, 644, 754, 817, 1978, 2063
BceAI	ACGGC	2 cut(s)	67, 164
BcgI	CGANNNNNNTGC	3 cut(s)	33, 1104, 1138
BcoDI	GTCTC	5 cut(s)	49, 572, 1210, 1862, 1991
BfaI	CTAG	4 cut(s)	822, 885, 1875, 1934
BfmI	CTRYAG	8 cut(s)	18, 352, 661, 939, 987, 1272, 1570, 2019
BfoI	RGCGCY	1 cut(s)	1966
BfrI	CTTAAG	2 cut(s)	248, 554
BfuAI	ACCTGC	1 cut(s)	971
BglI	GCCNNNNNGGC	1 cut(s)	377
BglII	AGATCT	2 cut(s)	842, 905
BlpI	GCTNAGC	3 cut(s)	381, 1375, 1898
Bme18I	GGWCC	1 cut(s)	1459
BmeT110I	CYCGRG	1 cut(s)	1722
BmgBI	CACGTC	2 cut(s)	728, 1985
BmgT120I	GGNCC	4 cut(s)	34, 35, 1203, 1459
BmiI	GGNNCC	5 cut(s)	36, 1340, 1528, 1964, 2064
BmrI	ACTGGG	4 cut(s)	669, 1531, 1786, 2038
BmuI	ACTGGG	4 cut(s)	669, 1531, 1786, 2038
BoxI	GACNNNNGTC	1 cut(s)	1094
BpiI	GAAGAC	2 cut(s)	1698, 1922
Bpu10I	CCTNAGC	1 cut(s)	1211
Bpu1102I	GCTNAGC	3 cut(s)	381, 1375, 1898
Bpu14I	TTCGAA	1 cut(s)	1114
BpuEI	CTTGAG	1 cut(s)	2015
BsaAI	YACGTR	1 cut(s)	1040
BsaHI	GRCGYC	3 cut(s)	83, 177, 1963
BsaI	GGTCTC	2 cut(s)	49, 572
BsaJI	CCNNGG	4 cut(s)	283, 537, 1639, 1742
BsaWI	WCCGGW	1 cut(s)	115
BsaXI	ACNNNNNCTCC	6 cut(s)	218, 248, 602, 632, 1583, 1613
Bsc4I	CCNNNNNNNGG	1 cut(s)	1212
Bse1I	ACTGG	7 cut(s)	31, 675, 1526, 1530, 1603, 1781, 2033
Bse3DI	GCAATG	1 cut(s)	1170
BseDI	CCNNGG	4 cut(s)	283, 537, 1639, 1742
BseGI	GGATG	1 cut(s)	1941
BseLI	CCNNNNNNNGG	1 cut(s)	1212
BseMI	GCAATG	1 cut(s)	1170
BseNI	ACTGG	7 cut(s)	31, 675, 1526, 1530, 1603, 1781, 2033
BseRI	GAGGAG	6 cut(s)	104, 132, 872, 935, 1228, 1740
BseSI	GKGCMC	3 cut(s)	38, 1343, 1697
BseXI	GCAGC	8 cut(s)	32, 256, 778, 925, 973, 1001, 1433, 2033
BsgI	GTGCAG	3 cut(s)	189, 949, 1554
Bsh1236I	CGCG	2 cut(s)	197, 264
Bsh1285I	CGRYCG	1 cut(s)	2113
BshFI	GGCC	5 cut(s)	36, 826, 889, 1205, 1833
BshNI	GGYRCC	2 cut(s)	1338, 1962
BsiEI	CGRYCG	1 cut(s)	2113
BsiHKAI	GWGCWC	2 cut(s)	96, 1732
BsiHKCI	CYCGRG	1 cut(s)	1722
BsiSI	CCGG	2 cut(s)	86, 116
BslFI	GGGAC	2 cut(s)	738, 1793
BslI	CCNNNNNNNGG	1 cut(s)	1212
BsmAI	GTCTC	5 cut(s)	49, 572, 1210, 1862, 1991
BsmFI	GGGAC	2 cut(s)	738, 1793
BsmI	GAATGC	1 cut(s)	460
BsnI	GGCC	5 cut(s)	36, 826, 889, 1205, 1833
Bso31I	GGTCTC	2 cut(s)	49, 572
BsoBI	CYCGRG	1 cut(s)	1722
Bsp119I	TTCGAA	1 cut(s)	1114
Bsp120I	GGGCCC	1 cut(s)	34
Bsp1286I	GDGCHC	6 cut(s)	38, 96, 1343, 1697, 1732, 1850
Bsp1407I	TGTACA	1 cut(s)	1169
Bsp143I	GATC	4 cut(s)	166, 842, 905, 1553
Bsp1720I	GCTNAGC	3 cut(s)	381, 1375, 1898
BspACI	CCGC	9 cut(s)	59, 62, 65, 68, 71, 241, 262, 349, 1462
BspANI	GGCC	5 cut(s)	36, 826, 889, 1205, 1833
BspFNI	CGCG	2 cut(s)	197, 264
BspLI	GGNNCC	5 cut(s)	36, 1340, 1528, 1964, 2064
BspMAI	CTGCAG	4 cut(s)	22, 943, 991, 2023
BspMI	ACCTGC	1 cut(s)	971
BspPI	GGATC	1 cut(s)	174
BspQI	GCTCTTC	1 cut(s)	1386
BspT104I	TTCGAA	1 cut(s)	1114
BspT107I	GGYRCC	2 cut(s)	1338, 1962
BspTI	CTTAAG	2 cut(s)	248, 554
BspTNI	GGTCTC	2 cut(s)	49, 572
BsrDI	GCAATG	1 cut(s)	1170
BsrGI	TGTACA	1 cut(s)	1169
BsrI	ACTGG	7 cut(s)	31, 675, 1526, 1530, 1603, 1781, 2033
BssECI	CCNNGG	4 cut(s)	283, 537, 1639, 1742
BssMI	GATC	4 cut(s)	166, 842, 905, 1553
BssNI	GRCGYC	3 cut(s)	83, 177, 1963
BssT1I	CCWWGG	3 cut(s)	537, 1639, 1742
Bst4CI	ACNGT	8 cut(s)	129, 210, 1096, 1273, 1285, 1312, 1435, 1704
Bst6I	CTCTTC	5 cut(s)	714, 777, 849, 912, 1386
BstACI	GRCGYC	3 cut(s)	83, 177, 1963
BstAFI	CTTAAG	2 cut(s)	248, 554
BstAUI	TGTACA	1 cut(s)	1169
BstBAI	YACGTR	1 cut(s)	1040
BstBI	TTCGAA	1 cut(s)	1114
BstC8I	GCNNGC	8 cut(s)	204, 579, 1279, 1372, 1419, 1577, 1581, 1961
BstENI	CCTNNNNNAGG	1 cut(s)	1210
BstF5I	GGATG	1 cut(s)	1941
BstFNI	CGCG	2 cut(s)	197, 264
BstH2I	RGCGCY	1 cut(s)	1966
BstHHI	GCGC	1 cut(s)	1965
BstKTI	GATC	4 cut(s)	169, 845, 908, 1556
BstMAI	GTCTC	5 cut(s)	49, 572, 1210, 1862, 1991
BstMBI	GATC	4 cut(s)	166, 842, 905, 1553
BstMCI	CGRYCG	1 cut(s)	2113
BstNSI	RCATGY	2 cut(s)	581, 1152
BstPAI	GACNNNNGTC	1 cut(s)	1094
BstSFI	CTRYAG	8 cut(s)	18, 352, 661, 939, 987, 1272, 1570, 2019
BstSLI	GKGCMC	3 cut(s)	38, 1343, 1697
BstUI	CGCG	2 cut(s)	197, 264
BstV1I	GCAGC	8 cut(s)	32, 256, 778, 925, 973, 1001, 1433, 2033
BstV2I	GAAGAC	2 cut(s)	1698, 1922
BstX2I	RGATCY	2 cut(s)	842, 905
BstXI	CCANNNNNNTGG	1 cut(s)	55
BstYI	RGATCY	2 cut(s)	842, 905
BsuRI	GGCC	5 cut(s)	36, 826, 889, 1205, 1833
BtgZI	GCGATG	1 cut(s)	94
BtrI	CACGTC	2 cut(s)	728, 1985
BtsCI	GGATG	1 cut(s)	1941
BtsIMutI	CAGTG	5 cut(s)	1269, 1281, 1537, 1610, 1774
BveI	ACCTGC	1 cut(s)	971
Cac8I	GCNNGC	8 cut(s)	204, 579, 1279, 1372, 1419, 1577, 1581, 1961
CaiI	CAGNNNCTG	5 cut(s)	26, 974, 986, 1271, 1427
CfoI	GCGC	1 cut(s)	1965
Cfr13I	GGNCC	4 cut(s)	34, 35, 1203, 1459
CseI	GACGC	3 cut(s)	91, 185, 1182
DinI	GGCGCC	1 cut(s)	1964
DpnI	GATC	4 cut(s)	168, 844, 907, 1555
DpnII	GATC	4 cut(s)	166, 842, 905, 1553
DraI	TTTAAA	1 cut(s)	1026
Eam1104I	CTCTTC	5 cut(s)	714, 777, 849, 912, 1386
EarI	CTCTTC	5 cut(s)	714, 777, 849, 912, 1386
Ecl136II	GAGCTC	1 cut(s)	94
Eco130I	CCWWGG	3 cut(s)	537, 1639, 1742
Eco147I	AGGCCT	2 cut(s)	826, 889
Eco24I	GRGCYC	3 cut(s)	38, 96, 1850
Eco31I	GGTCTC	2 cut(s)	49, 572
Eco47I	GGWCC	1 cut(s)	1459
Eco53kI	GAGCTC	1 cut(s)	94
Eco57I	CTGAAG	2 cut(s)	792, 1045
Eco72I	CACGTG	1 cut(s)	1040
Eco88I	CYCGRG	1 cut(s)	1722
EcoICRI	GAGCTC	1 cut(s)	94
EcoNI	CCTNNNNNAGG	1 cut(s)	1210
EcoRI	GAATTC	1 cut(s)	1001
EcoT14I	CCWWGG	3 cut(s)	537, 1639, 1742
EcoT22I	ATGCAT	1 cut(s)	1715
EcoT38I	GRGCYC	3 cut(s)	38, 96, 1850
EgeI	GGCGCC	1 cut(s)	1964
EheI	GGCGCC	1 cut(s)	1964
ErhI	CCWWGG	3 cut(s)	537, 1639, 1742
FaqI	GGGAC	2 cut(s)	738, 1793
FblI	GTMKAC	1 cut(s)	1314
FokI	GGATG	1 cut(s)	1928
FriOI	GRGCYC	3 cut(s)	38, 96, 1850
FspBI	CTAG	4 cut(s)	822, 885, 1875, 1934
GlaI	GCGC	1 cut(s)	1964
HaeII	RGCGCY	1 cut(s)	1966
HaeIII	GGCC	5 cut(s)	36, 826, 889, 1205, 1833
HapII	CCGG	2 cut(s)	86, 116
HgaI	GACGC	3 cut(s)	91, 185, 1182
HhaI	GCGC	1 cut(s)	1965
Hin1I	GRCGYC	3 cut(s)	83, 177, 1963
Hin6I	GCGC	1 cut(s)	1963
HinP1I	GCGC	1 cut(s)	1963
HincII	GTYRAC	2 cut(s)	702, 1438
HindII	GTYRAC	2 cut(s)	702, 1438
HindIII	AAGCTT	3 cut(s)	506, 1049, 1577
HinfI	GANTC	5 cut(s)	818, 881, 1496, 1625, 2015
HpaII	CCGG	2 cut(s)	86, 116
HphI	GGTGA	4 cut(s)	130, 526, 884, 1166
Hpy166II	GTNNAC	9 cut(s)	257, 422, 534, 702, 1170, 1315, 1360, 1438, 1600
Hpy188III	TCNNGA	8 cut(s)	296, 840, 903, 1265, 1557, 1867, 1934, 2066
Hpy8I	GTNNAC	9 cut(s)	257, 422, 534, 702, 1170, 1315, 1360, 1438, 1600
Hpy99I	CGWCG	3 cut(s)	11, 179, 1198
HpyAV	CCTTC	7 cut(s)	143, 217, 837, 900, 1110, 1807, 2053
HpyCH4III	ACNGT	8 cut(s)	129, 210, 1096, 1273, 1285, 1312, 1435, 1704
HpyCH4IV	ACGT	4 cut(s)	727, 1039, 1825, 1984
HpySE526I	ACGT	4 cut(s)	727, 1039, 1825, 1984
Hsp92I	GRCGYC	3 cut(s)	83, 177, 1963
HspAI	GCGC	1 cut(s)	1963
KasI	GGCGCC	1 cut(s)	1962
Kzo9I	GATC	4 cut(s)	166, 842, 905, 1553
LguI	GCTCTTC	1 cut(s)	1386
LmnI	GCTCC	7 cut(s)	91, 118, 788, 1526, 1727, 1765, 1795
Lsp1109I	GCAGC	8 cut(s)	32, 256, 778, 925, 973, 1001, 1433, 2033
MaeI	CTAG	4 cut(s)	822, 885, 1875, 1934
MaeII	ACGT	4 cut(s)	727, 1039, 1825, 1984
MaeIII	GTNAC	4 cut(s)	643, 677, 1029, 1537
MalI	GATC	4 cut(s)	168, 844, 907, 1555
MboI	GATC	4 cut(s)	166, 842, 905, 1553
MflI	RGATCY	2 cut(s)	842, 905
MhlI	GDGCHC	6 cut(s)	38, 96, 1343, 1697, 1732, 1850
MluCI	AATT	8 cut(s)	583, 594, 634, 668, 849, 912, 1001, 1734
Mly113I	GGCGCC	1 cut(s)	1963
MlyI	GAGTC	1 cut(s)	1490
MmeI	TCCRAC	3 cut(s)	72, 1078, 1176
Mph1103I	ATGCAT	1 cut(s)	1715
MroXI	GAANNNNTTC	2 cut(s)	741, 804
MseI	TTAA	6 cut(s)	249, 488, 555, 1025, 1737, 1803
MslI	CAYNNNNRTG	3 cut(s)	429, 1038, 1445
MspA1I	CMGCKG	1 cut(s)	2024
MspCI	CTTAAG	2 cut(s)	248, 554
MspI	CCGG	2 cut(s)	86, 116
Mva1269I	GAATGC	1 cut(s)	460
MvnI	CGCG	2 cut(s)	197, 264
NarI	GGCGCC	1 cut(s)	1963
NdeII	GATC	4 cut(s)	166, 842, 905, 1553
NlaIV	GGNNCC	5 cut(s)	36, 1340, 1528, 1964, 2064
NmuCI	GTSAC	1 cut(s)	1029
NsiI	ATGCAT	1 cut(s)	1715
NspI	RCATGY	2 cut(s)	581, 1152
NspV	TTCGAA	1 cut(s)	1114
OliI	CACNNNNGTG	1 cut(s)	1038
PaeI	GCATGC	1 cut(s)	581
PaeR7I	CTCGAG	1 cut(s)	1722
PceI	AGGCCT	2 cut(s)	826, 889
PciI	ACATGT	1 cut(s)	1148
PciSI	GCTCTTC	1 cut(s)	1386
PctI	GAATGC	1 cut(s)	460
PdmI	GAANNNNTTC	2 cut(s)	741, 804
PfeI	GAWTC	4 cut(s)	818, 881, 1625, 2015
PflFI	GACNNNGTC	1 cut(s)	179
PleI	GAGTC	1 cut(s)	1490
PluTI	GGCGCC	1 cut(s)	1966
PmaCI	CACGTG	1 cut(s)	1040
PmlI	CACGTG	1 cut(s)	1040
PpsI	GAGTC	1 cut(s)	1490
Ppu21I	YACGTR	1 cut(s)	1040
PscI	ACATGT	1 cut(s)	1148
PshAI	GACNNNNGTC	1 cut(s)	1094
Psp124BI	GAGCTC	1 cut(s)	96
PspCI	CACGTG	1 cut(s)	1040
PspN4I	GGNNCC	5 cut(s)	36, 1340, 1528, 1964, 2064
PspOMI	GGGCCC	1 cut(s)	34
PspPI	GGNCC	4 cut(s)	34, 35, 1203, 1459
PspXI	VCTCGAGB	1 cut(s)	1722
PstI	CTGCAG	4 cut(s)	22, 943, 991, 2023
PstNI	CAGNNNCTG	5 cut(s)	26, 974, 986, 1271, 1427
PsuI	RGATCY	2 cut(s)	842, 905
PsyI	GACNNNGTC	1 cut(s)	179
PvuII	CAGCTG	1 cut(s)	2024
RseI	CAYNNNNRTG	3 cut(s)	429, 1038, 1445
SacI	GAGCTC	1 cut(s)	96
SapI	GCTCTTC	1 cut(s)	1386
SaqAI	TTAA	6 cut(s)	249, 488, 555, 1025, 1737, 1803
Sau3AI	GATC	4 cut(s)	166, 842, 905, 1553
Sau96I	GGNCC	4 cut(s)	34, 35, 1203, 1459
SchI	GAGTC	1 cut(s)	1490
SduI	GDGCHC	6 cut(s)	38, 96, 1343, 1697, 1732, 1850
SfcI	CTRYAG	8 cut(s)	18, 352, 661, 939, 987, 1272, 1570, 2019
SfoI	GGCGCC	1 cut(s)	1964
Sfr274I	CTCGAG	1 cut(s)	1722
SfuI	TTCGAA	1 cut(s)	1114
SinI	GGWCC	1 cut(s)	1459
SlaI	CTCGAG	1 cut(s)	1722
SmiMI	CAYNNNNRTG	3 cut(s)	429, 1038, 1445
SmlI	CTYRAG	4 cut(s)	248, 554, 1722, 1994
SmoI	CTYRAG	4 cut(s)	248, 554, 1722, 1994
SphI	GCATGC	1 cut(s)	581
Sse9I	AATT	8 cut(s)	583, 594, 634, 668, 849, 912, 1001, 1734
SseBI	AGGCCT	2 cut(s)	826, 889
SsiI	CCGC	9 cut(s)	59, 62, 65, 68, 71, 241, 262, 349, 1462
SspDI	GGCGCC	1 cut(s)	1962
SspI	AATATT	2 cut(s)	997, 1807
SspMI	CTAG	4 cut(s)	822, 885, 1875, 1934
SstI	GAGCTC	1 cut(s)	96
StuI	AGGCCT	2 cut(s)	826, 889
StyI	CCWWGG	3 cut(s)	537, 1639, 1742
TaaI	ACNGT	8 cut(s)	129, 210, 1096, 1273, 1285, 1312, 1435, 1704
TaiI	ACGT	4 cut(s)	730, 1042, 1828, 1987
TaqI	TCGA	5 cut(s)	212, 1114, 1552, 1723, 1866
TaqII	GACCGA	1 cut(s)	2127
TasI	AATT	8 cut(s)	583, 594, 634, 668, 849, 912, 1001, 1734
TatI	WGTACW	1 cut(s)	1169
TauI	GCSGC	8 cut(s)	62, 65, 68, 71, 74, 244, 264, 351
TfiI	GAWTC	4 cut(s)	818, 881, 1625, 2015
Tru1I	TTAA	6 cut(s)	249, 488, 555, 1025, 1737, 1803
Tru9I	TTAA	6 cut(s)	249, 488, 555, 1025, 1737, 1803
TscAI	CASTG	5 cut(s)	1276, 1288, 1537, 1610, 1781
TseFI	GTSAC	1 cut(s)	1029
TseI	GCWGC	8 cut(s)	20, 244, 791, 938, 986, 989, 1421, 2021
Tsp45I	GTSAC	1 cut(s)	1029
TspDTI	ATGAA	9 cut(s)	494, 542, 750, 768, 813, 1212, 1309, 1418, 1698
TspRI	CASTG	5 cut(s)	1276, 1288, 1537, 1610, 1781
Tth111I	GACNNNGTC	1 cut(s)	179
Vha464I	CTTAAG	2 cut(s)	248, 554
VpaK11BI	GGWCC	1 cut(s)	1459
XagI	CCTNNNNNAGG	1 cut(s)	1210
XapI	RAATTY	2 cut(s)	668, 1001
XbaI	TCTAGA	1 cut(s)	1933
XceI	RCATGY	2 cut(s)	581, 1152
XhoI	CTCGAG	1 cut(s)	1722
XmiI	GTMKAC	1 cut(s)	1314
XmnI	GAANNNNTTC	2 cut(s)	741, 804
XspI	CTAG	4 cut(s)	822, 885, 1875, 1934
Zsp2I	ATGCAT	1 cut(s)	1715

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.