Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004194

Physical Location & Seq

Genomic Coordinates Forward (+)

25292672 .. 25294179

Gene Structure 1508 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24081

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGCAATGTGTAGAAATCTTTTGCAGGGTCAAGCTTCGGAATGGGCCCTGCTGAGGAGACATTCATCTGAGGATTTGTTTGGCGTTCAGATATGTGGGGCATATCCAGACACCGTAGCACGCACTGTTGAACTTATAGAACAGGAATGTACCGTAGACTTCATTGATATAAATATGGGGTGCCCAATAGATATTGTTGTGAACAAGGGTGCTGGCTCAGCTGTTCTAACAAAACCAATGCGAATGAAAGGCATTGTGCAAGCAGCTTCTGGTACAGTTGACATTCCTATAACTATCAAGGTCCGCACAGCCTATTTTGAGGGGAAAAATCGCATTGACTCACTTATTGCTGACATGGGTAACTGGGGAGCCAGTGCAGTAACAATACATGGTCGATCACGACAGCAACGCTACAGCAAGCTTGCAGATTGGGAATATGTGTACCAGTGTGCTAAAAAAGCCCCTGATTCTTTGCAAGTTCTTGGAAATGGAGATGTATTTTCGTATGTAGATTGGAACAAGCACAAGGCTGAGTGCCCTGAACTGTTCATTCATAATTGGTCGAGGAGCACTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002943 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016491 GO:0016627 GO:0017150 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0055114 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dus zf-CCCH

Protein Analysis

192

Amino Acids

21.4

Weight (kDa)

6.89

Isoelectric Point (pI)

35.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dus	PF01207	17 - 176	1.7e-35	Dihydrouridine synthase (Dus)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004194)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38890
fragaria_vesca	FvH4_2g10690 FvH4_2g10690 FvH4_2g10690 FvH4_2g10690 FvH4_2g10690 FvH4_2g10690 FvH4_2g10690 FvH4_2g10690
malus_domestica	MD05G1054400.v1.1 MD10G1062000.v1.1
prunus_persica	Prupe.8G082800_v2.0.a1
pyrus_communis	pycom10g04770
rosa_chinensis	RchiOBHm_Chr6g0268371 RchiOBHm_Chr6g0268451 RchiOBHm_Chr6g0268461 RchiOBHm_Chr6g0271651 RchiOBHm_Chr6g0271661
rosa_laevigata	RLG00000013910
rosa_multiflora	Rmu_sc0002404.1_g000009 Rmu_sc0002404.1_g000017 Rmu_sc0007949.1_g000004 Rmu_sc0008184.1_g000007
rosa_roxburghii	Rroxscaffold_7G00199830
rosa_rugosa	Rorug06G0041000 Rorug06G0042100
rosa_samantha	Rh6AG161000 Rh6BG165400 Rh6CG152700 Rh6CG159400 Rh6DG151200
rosa_wichuraiana	Rw6G013920 Rw6G013960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	180
AccI	GTMKAC	1 cut(s)	156
AciI	CCGC	1 cut(s)	304
AfaI	GTAC	3 cut(s)	151, 274, 443
AfiI	CCNNNNNNNGG	1 cut(s)	54
AgsI	TTSAA	1 cut(s)	131
AluBI	AGCT	4 cut(s)	35, 221, 266, 421
AluI	AGCT	4 cut(s)	35, 221, 266, 421
Alw21I	GWGCWC	1 cut(s)	572
Alw26I	GTCTC	1 cut(s)	52
AlwNI	CAGNNNCTG	1 cut(s)	269
AoxI	GGCC	1 cut(s)	45
ApaI	GGGCCC	1 cut(s)	49
ApeKI	GCWGC	1 cut(s)	263
AspS9I	GGNCC	3 cut(s)	45, 46, 301
AvaII	GGWCC	1 cut(s)	301
BaeGI	GKGCMC	3 cut(s)	49, 185, 539
BanI	GGYRCC	1 cut(s)	180
BanII	GRGCYC	1 cut(s)	49
Bbv12I	GWGCWC	1 cut(s)	572
BbvCI	CCTCAGC	1 cut(s)	53
BbvI	GCAGC	1 cut(s)	275
BcoDI	GTCTC	1 cut(s)	52
BfmI	CTRYAG	1 cut(s)	412
BisI	GCNGC	1 cut(s)	264
BlpI	GCTNAGC	1 cut(s)	217
BlsI	GCNGC	1 cut(s)	265
Bme18I	GGWCC	1 cut(s)	301
BmgT120I	GGNCC	3 cut(s)	45, 46, 301
BmiI	GGNNCC	3 cut(s)	47, 182, 370
BmrI	ACTGGG	1 cut(s)	373
BmuI	ACTGGG	1 cut(s)	373
Bpu10I	CCTNAGC	1 cut(s)	53
Bpu1102I	GCTNAGC	1 cut(s)	217
Bsc4I	CCNNNNNNNGG	1 cut(s)	54
Bse1I	ACTGG	3 cut(s)	368, 372, 445
Bse3DI	GCAATG	1 cut(s)	12
BseLI	CCNNNNNNNGG	1 cut(s)	54
BseMI	GCAATG	1 cut(s)	12
BseMII	CTCAG	4 cut(s)	44, 60, 231, 522
BseNI	ACTGG	3 cut(s)	368, 372, 445
BseRI	GAGGAG	1 cut(s)	70
BseSI	GKGCMC	3 cut(s)	49, 185, 539
BseXI	GCAGC	1 cut(s)	275
BsgI	GTGCAG	1 cut(s)	396
BshFI	GGCC	1 cut(s)	47
BshNI	GGYRCC	1 cut(s)	180
BsiHKAI	GWGCWC	1 cut(s)	572
BslI	CCNNNNNNNGG	1 cut(s)	54
BsmAI	GTCTC	1 cut(s)	52
BsnI	GGCC	1 cut(s)	47
Bsp120I	GGGCCC	1 cut(s)	45
Bsp1286I	GDGCHC	4 cut(s)	49, 185, 539, 572
Bsp143I	GATC	1 cut(s)	395
Bsp1720I	GCTNAGC	1 cut(s)	217
BspACI	CCGC	1 cut(s)	304
BspANI	GGCC	1 cut(s)	47
BspCNI	CTCAG	4 cut(s)	45, 61, 230, 523
BspLI	GGNNCC	3 cut(s)	47, 182, 370
BspT107I	GGYRCC	1 cut(s)	180
BsrDI	GCAATG	1 cut(s)	12
BsrI	ACTGG	3 cut(s)	368, 372, 445
BssMI	GATC	1 cut(s)	395
Bst4CI	ACNGT	5 cut(s)	115, 127, 154, 277, 546
BstC8I	GCNNGC	5 cut(s)	121, 214, 261, 419, 423
BstDEI	CTNAG	4 cut(s)	53, 69, 217, 531
BstKTI	GATC	1 cut(s)	398
BstMAI	GTCTC	1 cut(s)	52
BstMBI	GATC	1 cut(s)	395
BstMWI	GCNNNNNNNGC	2 cut(s)	218, 458
BstSFI	CTRYAG	1 cut(s)	412
BstSLI	GKGCMC	3 cut(s)	49, 185, 539
BstV1I	GCAGC	1 cut(s)	275
BsuRI	GGCC	1 cut(s)	47
BtsIMutI	CAGTG	3 cut(s)	123, 379, 452
Cac8I	GCNNGC	5 cut(s)	121, 214, 261, 419, 423
CaiI	CAGNNNCTG	1 cut(s)	269
Cfr13I	GGNCC	3 cut(s)	45, 46, 301
Csp6I	GTAC	3 cut(s)	150, 273, 442
CviAII	CATG	2 cut(s)	355, 389
CviQI	GTAC	3 cut(s)	150, 273, 442
DdeI	CTNAG	4 cut(s)	53, 69, 217, 531
DpnI	GATC	1 cut(s)	397
DpnII	GATC	1 cut(s)	395
Eco24I	GRGCYC	1 cut(s)	49
Eco47I	GGWCC	1 cut(s)	301
EcoO109I	RGGNCCY	1 cut(s)	46
EcoT38I	GRGCYC	1 cut(s)	49
FaeI	CATG	2 cut(s)	358, 392
FatI	CATG	2 cut(s)	354, 388
FblI	GTMKAC	1 cut(s)	156
Fnu4HI	GCNGC	1 cut(s)	264
FriOI	GRGCYC	1 cut(s)	49
Fsp4HI	GCNGC	1 cut(s)	264
GluI	GCNGC	1 cut(s)	264
HaeIII	GGCC	1 cut(s)	47
Hin1II	CATG	2 cut(s)	358, 392
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HindIII	AAGCTT	2 cut(s)	33, 419
HinfI	GANTC	2 cut(s)	338, 467
Hpy166II	GTNNAC	4 cut(s)	157, 202, 280, 442
Hpy188I	TCNGA	3 cut(s)	40, 70, 90
Hpy188III	TCNNGA	2 cut(s)	107, 399
Hpy8I	GTNNAC	4 cut(s)	157, 202, 280, 442
HpyCH4III	ACNGT	5 cut(s)	115, 127, 154, 277, 546
HpyCH4V	TGCA	5 cut(s)	25, 259, 377, 425, 475
HpyF10VI	GCNNNNNNNGC	2 cut(s)	218, 458
HpyF3I	CTNAG	4 cut(s)	53, 69, 217, 531
Hsp92II	CATG	2 cut(s)	358, 392
Kzo9I	GATC	1 cut(s)	395
LmnI	GCTCC	2 cut(s)	368, 567
Lsp1109I	GCAGC	1 cut(s)	275
MaeIII	GTNAC	2 cut(s)	359, 379
MalI	GATC	1 cut(s)	397
MboI	GATC	1 cut(s)	395
MhlI	GDGCHC	4 cut(s)	49, 185, 539, 572
MluCI	AATT	2 cut(s)	556, 574
MlyI	GAGTC	1 cut(s)	332
MnlI	CCTC	4 cut(s)	48, 64, 313, 558
MseI	TTAA	1 cut(s)	577
MspA1I	CMGCKG	1 cut(s)	221
MwoI	GCNNNNNNNGC	2 cut(s)	218, 458
NdeII	GATC	1 cut(s)	395
NlaIII	CATG	2 cut(s)	358, 392
NlaIV	GGNNCC	3 cut(s)	47, 182, 370
PfeI	GAWTC	1 cut(s)	467
PkrI	GCNGC	1 cut(s)	265
PleI	GAGTC	1 cut(s)	332
PpsI	GAGTC	1 cut(s)	332
PspN4I	GGNNCC	3 cut(s)	47, 182, 370
PspOMI	GGGCCC	1 cut(s)	45
PspPI	GGNCC	3 cut(s)	45, 46, 301
PstNI	CAGNNNCTG	1 cut(s)	269
PvuII	CAGCTG	1 cut(s)	221
RsaI	GTAC	3 cut(s)	151, 274, 443
RsaNI	GTAC	3 cut(s)	150, 273, 442
SaqAI	TTAA	1 cut(s)	577
SatI	GCNGC	1 cut(s)	264
Sau3AI	GATC	1 cut(s)	395
Sau96I	GGNCC	3 cut(s)	45, 46, 301
SchI	GAGTC	1 cut(s)	332
SduI	GDGCHC	4 cut(s)	49, 185, 539, 572
SetI	ASST	5 cut(s)	37, 223, 268, 303, 423
SfcI	CTRYAG	1 cut(s)	412
SinI	GGWCC	1 cut(s)	301
Sse9I	AATT	2 cut(s)	556, 574
SsiI	CCGC	1 cut(s)	304
TaaI	ACNGT	5 cut(s)	115, 127, 154, 277, 546
TaqI	TCGA	2 cut(s)	394, 563
TasI	AATT	2 cut(s)	556, 574
TfiI	GAWTC	1 cut(s)	467
Tru1I	TTAA	1 cut(s)	577
Tru9I	TTAA	1 cut(s)	577
TscAI	CASTG	3 cut(s)	130, 379, 452
TseI	GCWGC	1 cut(s)	263
TspDTI	ATGAA	5 cut(s)	54, 151, 260, 538, 542
TspRI	CASTG	3 cut(s)	130, 379, 452
VpaK11BI	GGWCC	1 cut(s)	301
XmiI	GTMKAC	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.