Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004194

Physical Location & Seq

Genomic Coordinates Forward (+)

5374963 .. 5376956

Gene Structure 1994 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0042100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGCTATTCCACAAAAAGCCAACCTTGTGTTATGGGAAATTACATGCTTCTTATGGCCAGTTTCCGACGATTGTGGATCCTAAAATACTTGAGGAGTTGAAAGGAGAAGATGAGCAACCACAACAGCAGCAGTTGCATGATTTCCTAGCACTGGCATTGTTATGCACTCAAGAGGAAAGTGACCTAAGGCCAGATATGATCGATGTGGCCAAAGAACTTGGAGGCCTAGTTCGTGTTCAAGAGGATGAGTTCTGGCACATGACTAAAGTCTTGAGATTGCGCGCCAACGATAGGAAATTAGGATTCTTTATTTTCTATGCTGTAATTGTGGATAAATGTGTGCAAGCTCCAGAGGCGTTTCGGTCAAGCGAAGCTAACTTTGGAGGCTTTAGACCTTGGTCTGGTAAAGCCGAGTCAGCTAATAAGAACTCCCAGACAGATCAAGTGGGAGATGGAGGCGCTAGCAGTGAAACCTTTGATCGCGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002943 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016491 GO:0016627 GO:0017150 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0055114 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dus zf-CCCH

Protein Analysis

162

Amino Acids

18.28

Weight (kDa)

5.23

Isoelectric Point (pI)

45.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004194)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38890
fragaria_vesca	FvH4_2g10690 FvH4_2g10690 FvH4_2g10690 FvH4_2g10690 FvH4_2g10690 FvH4_2g10690 FvH4_2g10690 FvH4_2g10690
malus_domestica	MD05G1054400.v1.1 MD10G1062000.v1.1
prunus_persica	Prupe.8G082800_v2.0.a1
pyrus_communis	pycom10g04770
rosa_chinensis	RchiOBHm_Chr6g0268371 RchiOBHm_Chr6g0268451 RchiOBHm_Chr6g0268461 RchiOBHm_Chr6g0271651 RchiOBHm_Chr6g0271661
rosa_laevigata	RLG00000013910
rosa_multiflora	Rmu_sc0002404.1_g000009 Rmu_sc0002404.1_g000017 Rmu_sc0007949.1_g000004 Rmu_sc0008184.1_g000007
rosa_roxburghii	Rroxscaffold_7G00199830
rosa_rugosa	Rorug06G0041000 Rorug06G0042100
rosa_samantha	Rh6AG161000 Rh6BG165400 Rh6CG152700 Rh6CG159400 Rh6DG151200
rosa_wichuraiana	Rw6G013920 Rw6G013960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	282, 483
AclWI	GGATC	2 cut(s)	71, 84
AcoI	YGGCCR	2 cut(s)	55, 207
AfiI	CCNNNNNNNGG	3 cut(s)	151, 291, 401
AgsI	TTSAA	2 cut(s)	100, 239
AjuI	GAANNNNNNNTTGG	2 cut(s)	363, 395
AloI	GAACNNNNNNTCC	2 cut(s)	213, 245
AluBI	AGCT	3 cut(s)	347, 374, 419
AluI	AGCT	3 cut(s)	347, 374, 419
AlwI	GGATC	2 cut(s)	71, 84
AoxI	GGCC	4 cut(s)	55, 188, 207, 223
ApeKI	GCWGC	1 cut(s)	127
AspLEI	GCGC	4 cut(s)	282, 284, 461, 485
AsuNHI	GCTAGC	1 cut(s)	461
AxyI	CCTNAGG	1 cut(s)	185
BalI	TGGCCA	2 cut(s)	57, 209
BamHI	GGATCC	1 cut(s)	76
BbvI	GCAGC	1 cut(s)	139
BccI	CCATC	1 cut(s)	446
BfaI	CTAG	3 cut(s)	146, 227, 462
BfoI	RGCGCY	1 cut(s)	462
BisI	GCNGC	1 cut(s)	128
BlsI	GCNGC	1 cut(s)	129
BmiI	GGNNCC	1 cut(s)	78
BmtI	GCTAGC	1 cut(s)	465
BoxI	GACNNNNGTC	2 cut(s)	266, 397
BpmI	CTGGAG	1 cut(s)	333
BpuEI	CTTGAG	3 cut(s)	110, 153, 292
Bsa29I	ATCGAT	1 cut(s)	201
BsaJI	CCNNGG	1 cut(s)	395
BsaXI	ACNNNNNCTCC	2 cut(s)	213, 243
Bsc4I	CCNNNNNNNGG	3 cut(s)	151, 291, 401
Bse1I	ACTGG	2 cut(s)	58, 156
Bse21I	CCTNAGG	1 cut(s)	185
BseCI	ATCGAT	1 cut(s)	201
BseDI	CCNNGG	1 cut(s)	395
BseGI	GGATG	1 cut(s)	250
BseLI	CCNNNNNNNGG	3 cut(s)	151, 291, 401
BseNI	ACTGG	2 cut(s)	58, 156
BsePI	GCGCGC	1 cut(s)	280
BseRI	GAGGAG	1 cut(s)	107
BseXI	GCAGC	1 cut(s)	139
Bsh1236I	CGCG	2 cut(s)	282, 483
BshFI	GGCC	4 cut(s)	57, 190, 209, 225
BshVI	ATCGAT	1 cut(s)	201
BslI	CCNNNNNNNGG	3 cut(s)	151, 291, 401
BsnI	GGCC	4 cut(s)	57, 190, 209, 225
Bsp143I	GATC	4 cut(s)	76, 198, 439, 478
BspANI	GGCC	4 cut(s)	57, 190, 209, 225
BspDI	ATCGAT	1 cut(s)	201
BspFNI	CGCG	2 cut(s)	282, 483
BspLI	GGNNCC	1 cut(s)	78
BspOI	GCTAGC	1 cut(s)	465
BspPI	GGATC	2 cut(s)	71, 84
BsrI	ACTGG	2 cut(s)	58, 156
BssECI	CCNNGG	1 cut(s)	395
BssHII	GCGCGC	1 cut(s)	280
BssMI	GATC	4 cut(s)	76, 198, 439, 478
BssT1I	CCWWGG	1 cut(s)	395
BstAPI	GCANNNNNTGC	1 cut(s)	133
BstC8I	GCNNGC	3 cut(s)	282, 345, 463
BstDEI	CTNAG	2 cut(s)	185, 486
BstF5I	GGATG	1 cut(s)	250
BstFNI	CGCG	2 cut(s)	282, 483
BstH2I	RGCGCY	1 cut(s)	462
BstHHI	GCGC	4 cut(s)	282, 284, 461, 485
BstKTI	GATC	4 cut(s)	79, 201, 442, 481
BstMBI	GATC	4 cut(s)	76, 198, 439, 478
BstMWI	GCNNNNNNNGC	3 cut(s)	133, 353, 416
BstNSI	RCATGY	1 cut(s)	47
BstPAI	GACNNNNGTC	2 cut(s)	266, 397
BstUI	CGCG	2 cut(s)	282, 483
BstV1I	GCAGC	1 cut(s)	139
BstX2I	RGATCY	1 cut(s)	76
BstYI	RGATCY	1 cut(s)	76
Bsu15I	ATCGAT	1 cut(s)	201
Bsu36I	CCTNAGG	1 cut(s)	185
BsuRI	GGCC	4 cut(s)	57, 190, 209, 225
BsuTUI	ATCGAT	1 cut(s)	201
BtsCI	GGATG	1 cut(s)	250
BtsI	GCAGTG	1 cut(s)	472
BtsIMutI	CAGTG	2 cut(s)	149, 472
Cac8I	GCNNGC	3 cut(s)	282, 345, 463
CfoI	GCGC	4 cut(s)	282, 284, 461, 485
ClaI	ATCGAT	1 cut(s)	201
CviAII	CATG	3 cut(s)	44, 137, 259
DdeI	CTNAG	2 cut(s)	185, 486
DpnI	GATC	4 cut(s)	78, 200, 441, 480
DpnII	GATC	4 cut(s)	76, 198, 439, 478
EaeI	YGGCCR	2 cut(s)	55, 207
Eco130I	CCWWGG	1 cut(s)	395
Eco147I	AGGCCT	1 cut(s)	225
Eco81I	CCTNAGG	1 cut(s)	185
EcoT14I	CCWWGG	1 cut(s)	395
ErhI	CCWWGG	1 cut(s)	395
FaeI	CATG	3 cut(s)	47, 140, 262
FaiI	YATR	8 cut(s)	33, 45, 54, 138, 163, 197, 260, 318
FalI	AAGNNNNNCTT	2 cut(s)	8, 40
FatI	CATG	3 cut(s)	43, 136, 258
Fnu4HI	GCNGC	1 cut(s)	128
FokI	GGATG	1 cut(s)	257
Fsp4HI	GCNGC	1 cut(s)	128
FspBI	CTAG	3 cut(s)	146, 227, 462
GlaI	GCGC	4 cut(s)	281, 283, 460, 484
GluI	GCNGC	1 cut(s)	128
GsuI	CTGGAG	1 cut(s)	333
HaeII	RGCGCY	1 cut(s)	462
HaeIII	GGCC	4 cut(s)	57, 190, 209, 225
HhaI	GCGC	4 cut(s)	282, 284, 461, 485
Hin1II	CATG	3 cut(s)	47, 140, 262
Hin6I	GCGC	4 cut(s)	280, 282, 459, 483
HinP1I	GCGC	4 cut(s)	280, 282, 459, 483
HinfI	GANTC	2 cut(s)	303, 413
Hpy188I	TCNGA	1 cut(s)	66
Hpy188III	TCNNGA	4 cut(s)	170, 239, 271, 350
Hpy99I	CGWCG	1 cut(s)	70
HpyCH4V	TGCA	3 cut(s)	136, 165, 343
HpyF10VI	GCNNNNNNNGC	3 cut(s)	133, 353, 416
HpyF3I	CTNAG	2 cut(s)	185, 486
Hsp92II	CATG	3 cut(s)	47, 140, 262
HspAI	GCGC	4 cut(s)	280, 282, 459, 483
Kzo9I	GATC	4 cut(s)	76, 198, 439, 478
LmnI	GCTCC	1 cut(s)	352
LpnPI	CCDG	7 cut(s)	71, 137, 204, 238, 363, 387, 446
Lsp1109I	GCAGC	1 cut(s)	139
MaeI	CTAG	3 cut(s)	146, 227, 462
MaeIII	GTNAC	1 cut(s)	179
MalI	GATC	4 cut(s)	78, 200, 441, 480
MboI	GATC	4 cut(s)	76, 198, 439, 478
MboII	GAAGA	1 cut(s)	119
MflI	RGATCY	1 cut(s)	76
MlsI	TGGCCA	2 cut(s)	57, 209
MluCI	AATT	3 cut(s)	38, 296, 324
MluNI	TGGCCA	2 cut(s)	57, 209
MlyI	GAGTC	1 cut(s)	422
MmeI	TCCRAC	1 cut(s)	89
MnlI	CCTC	7 cut(s)	85, 166, 215, 235, 346, 377, 449
Mox20I	TGGCCA	2 cut(s)	57, 209
MscI	TGGCCA	2 cut(s)	57, 209
MslI	CAYNNNNRTG	1 cut(s)	160
Msp20I	TGGCCA	2 cut(s)	57, 209
MvnI	CGCG	2 cut(s)	282, 483
MwoI	GCNNNNNNNGC	3 cut(s)	133, 353, 416
NdeII	GATC	4 cut(s)	76, 198, 439, 478
NheI	GCTAGC	1 cut(s)	461
NlaIII	CATG	3 cut(s)	47, 140, 262
NlaIV	GGNNCC	1 cut(s)	78
NmeAIII	GCCGAG	1 cut(s)	436
NmuCI	GTSAC	1 cut(s)	179
NspI	RCATGY	1 cut(s)	47
PauI	GCGCGC	1 cut(s)	280
PceI	AGGCCT	1 cut(s)	225
PfeI	GAWTC	1 cut(s)	303
PkrI	GCNGC	1 cut(s)	129
PleI	GAGTC	1 cut(s)	421
PpsI	GAGTC	1 cut(s)	421
PshAI	GACNNNNGTC	2 cut(s)	266, 397
PspN4I	GGNNCC	1 cut(s)	78
PsuI	RGATCY	1 cut(s)	76
PteI	GCGCGC	1 cut(s)	280
RseI	CAYNNNNRTG	1 cut(s)	160
SatI	GCNGC	1 cut(s)	128
Sau3AI	GATC	4 cut(s)	76, 198, 439, 478
SchI	GAGTC	1 cut(s)	422
SetI	ASST	7 cut(s)	26, 186, 349, 376, 397, 421, 476
SmiMI	CAYNNNNRTG	1 cut(s)	160
SmlI	CTYRAG	3 cut(s)	89, 168, 271
SmoI	CTYRAG	3 cut(s)	89, 168, 271
Sse9I	AATT	3 cut(s)	38, 296, 324
SseBI	AGGCCT	1 cut(s)	225
SspMI	CTAG	3 cut(s)	146, 227, 462
StuI	AGGCCT	1 cut(s)	225
StyI	CCWWGG	1 cut(s)	395
TaqI	TCGA	1 cut(s)	201
TaqII	GACCGA	1 cut(s)	351
TasI	AATT	3 cut(s)	38, 296, 324
TfiI	GAWTC	1 cut(s)	303
TscAI	CASTG	2 cut(s)	156, 472
TseFI	GTSAC	1 cut(s)	179
TseI	GCWGC	1 cut(s)	127
Tsp45I	GTSAC	1 cut(s)	179
TspRI	CASTG	2 cut(s)	156, 472
XceI	RCATGY	1 cut(s)	47
XspI	CTAG	3 cut(s)	146, 227, 462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.