Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005597

Physical Location & Seq

Genomic Coordinates Reverse (-)

18265735 .. 18267829

Gene Structure 2095 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G39230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGACGAGTAAAAGCAAAATCCTGTTCATCGGAGGAACGGGTTATATCGGGAAATATATAGTGGAAGCGAGCGCAAGATCTGGCCACCCAACCTTAGTTCTCGTTCGAAATTCGACGCTCACAAGCCCTTCACGATCCTCCACCATCGAGAATTTCAAGAACCTCGGCGTTCAGTTTCTCCTCGGAGACCTTGACGACCATACGAGTCTCGTGAATTCGATAAAGCAAGCGGATGTGGTCATCTCTACTGTTGGGCACTCCCTCTTGGGACATCAATACAAGATCATCTCCGCCATTAAAGAAGCCGGTAATGTTAAGAGATTCTTTCCCTCCGAGTTTGGAAATGACGTAGACCGTGTTTTCACTGTCGAACCGGCCAAGTCAGCCTATGCTACAAAGGCCAAAATCCGGCGAACAATTGAGGCCGAAGGAATCCCATACACTTATGTCTCATGCAACTTCTTCGCTGGCTACTTCCTCCCAACTCTAGCTCAGCCTGGTGCTACTTCTGCTCCACGGGATAAGGTCATTGTTTTAGGTGATGGGAACCCCAAAGCTGTGTTCAACAAGGAAGAAGACATCGGAACTTACACAATCAATGCCGTAGATGATCCAAGAACTTTGAACAAGATCTTATATATTAGGCCACCAATGAACACTTACTCATTCAATGATCTTGTCTCGCTTTGGGAGAACAAGATTGGCAAAACACTTGAAAGAATCTACGTTCCAGAAGAACAACTCCTCAAACAGATCATAGAATCATCACCCCCACTCAACGTGATGCTATCCCTTTGTCACTGCGTTTTCGTGAAAGGAGGACACACAAGCTTTGAAATCGAACCTTCTTTCGGGGTAGAAGCTTCTGAGCTTTACCCTGATGTCAAATACACTACTGTTGATGAAATCCTCAACCAATATGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006725 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009806 GO:0009807 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016491 GO:0016651 GO:0019438 GO:0019748 GO:0042221 GO:0044237 GO:0044249 GO:0044464 GO:0044550 GO:0046686 GO:0050664 GO:0050896 GO:0055114 GO:0071704 GO:0071944 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

308

Amino Acids

34.07

Weight (kDa)

6.33

Isoelectric Point (pI)

37.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	4 - 304	3.6e-90	NmrA-like family
Epimerase	PF01370	7 - 86	5.6e-07	NAD dependent epimerase/dehydratase family
GDP_Man_Dehyd	PF16363	10 - 78	6.8e-06	GDP-mannose 4,6 dehydratase
NAD_binding_10	PF13460	11 - 153	3.9e-13	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39230
fragaria_vesca	FvH4_2g09110 FvH4_2g09120
malus_domestica	MD10G1073200.v1.1 MD10G1073500.v1.1
prunus_persica	Prupe.8G094500_v2.0.a1
pyrus_communis	pycom10g05770 pycom10g05780
rosa_chinensis	RchiOBHm_Chr6g0265001 RchiOBHm_Chr6g0265011
rosa_laevigata	RLG00000014216 RLG00000014221 RLG00000014224
rosa_multiflora	Rmu_sc0000546.1_g000080 Rmu_sc0002934.1_g000023
rosa_roxburghii	Rroxscaffold_175G00432080 Rroxscaffold_175G00432090 Rroxscaffold_7G00203100 Rroxscaffold_7G00203110
rosa_rugosa	Rorug06G0013800 Rorug06G0013900
rosa_samantha	Rh6AG136100 Rh6BG132900 Rh6BG133100 Rh6DG118700 Rh6DG118900
rosa_wichuraiana	Rw6G011720 Rw6G011730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	351
AciI	CCGC	2 cut(s)	230, 291
AclWI	GGATC	2 cut(s)	129, 605
AcoI	YGGCCR	2 cut(s)	82, 375
AcsI	RAATTY	3 cut(s)	109, 151, 214
AfiI	CCNNNNNNNGG	2 cut(s)	408, 851
AgsI	TTSAA	6 cut(s)	157, 565, 625, 670, 716, 836
AjnI	CCWGG	1 cut(s)	496
AjuI	GAANNNNNNNTTGG	2 cut(s)	545, 577
AluBI	AGCT	5 cut(s)	491, 557, 831, 863, 871
AluI	AGCT	5 cut(s)	491, 557, 831, 863, 871
Alw26I	GTCTC	4 cut(s)	180, 212, 454, 685
AlwI	GGATC	2 cut(s)	129, 605
AoxI	GGCC	5 cut(s)	82, 375, 399, 423, 644
ApoI	RAATTY	3 cut(s)	109, 151, 214
AspLEI	GCGC	1 cut(s)	74
AsuHPI	GGTGA	2 cut(s)	551, 759
AsuII	TTCGAA	1 cut(s)	106
BaeGI	GKGCMC	1 cut(s)	258
BalI	TGGCCA	1 cut(s)	84
BauI	CACGAG	1 cut(s)	209
BbsI	GAAGAC	1 cut(s)	582
BccI	CCATC	2 cut(s)	152, 536
BceAI	ACGGC	1 cut(s)	587
BcgI	CGANNNNNNTGC	2 cut(s)	445, 479
BciT130I	CCWGG	1 cut(s)	498
BcoDI	GTCTC	4 cut(s)	180, 212, 454, 685
BfaI	CTAG	1 cut(s)	488
BglII	AGATCT	2 cut(s)	77, 630
BlpI	GCTNAGC	1 cut(s)	492
Bme1390I	CCNGG	1 cut(s)	498
BmiI	GGNNCC	1 cut(s)	548
BmrFI	CCNGG	1 cut(s)	498
BmsI	GCATC	1 cut(s)	774
BpiI	GAAGAC	1 cut(s)	582
Bpu1102I	GCTNAGC	1 cut(s)	492
Bpu14I	TTCGAA	1 cut(s)	106
BsaI	GGTCTC	1 cut(s)	180
BsaJI	CCNNGG	3 cut(s)	163, 181, 515
BsaXI	ACNNNNNCTCC	2 cut(s)	496, 526
Bsc4I	CCNNNNNNNGG	2 cut(s)	408, 851
Bse118I	RCCGGY	2 cut(s)	305, 373
BseBI	CCWGG	1 cut(s)	498
BseDI	CCNNGG	3 cut(s)	163, 181, 515
BseGI	GGATG	1 cut(s)	238
BseLI	CCNNNNNNNGG	2 cut(s)	408, 851
BseMII	CTCAG	2 cut(s)	506, 858
BseRI	GAGGAG	2 cut(s)	170, 734
BseSI	GKGCMC	1 cut(s)	258
BshFI	GGCC	5 cut(s)	84, 377, 401, 425, 646
BsiSI	CCGG	3 cut(s)	306, 374, 409
BslFI	GGGAC	1 cut(s)	282
BslI	CCNNNNNNNGG	2 cut(s)	408, 851
BsmAI	GTCTC	4 cut(s)	180, 212, 454, 685
BsmFI	GGGAC	1 cut(s)	282
BsnI	GGCC	5 cut(s)	84, 377, 401, 425, 646
Bso31I	GGTCTC	1 cut(s)	180
Bsp119I	TTCGAA	1 cut(s)	106
Bsp1286I	GDGCHC	1 cut(s)	258
Bsp143I	GATC	7 cut(s)	77, 134, 282, 610, 630, 673, 753
Bsp1720I	GCTNAGC	1 cut(s)	492
BspACI	CCGC	2 cut(s)	230, 291
BspANI	GGCC	5 cut(s)	84, 377, 401, 425, 646
BspCNI	CTCAG	2 cut(s)	505, 859
BspLI	GGNNCC	1 cut(s)	548
BspPI	GGATC	2 cut(s)	129, 605
BspT104I	TTCGAA	1 cut(s)	106
BspTNI	GGTCTC	1 cut(s)	180
BsrFI	RCCGGY	2 cut(s)	305, 373
BssAI	RCCGGY	2 cut(s)	305, 373
BssECI	CCNNGG	3 cut(s)	163, 181, 515
BssMI	GATC	7 cut(s)	77, 134, 282, 610, 630, 673, 753
BssSI	CACGAG	1 cut(s)	209
Bst2BI	CACGAG	1 cut(s)	209
Bst2UI	CCWGG	1 cut(s)	498
Bst4CI	ACNGT	4 cut(s)	250, 356, 367, 898
BstBI	TTCGAA	1 cut(s)	106
BstC8I	GCNNGC	3 cut(s)	70, 228, 469
BstDEI	CTNAG	3 cut(s)	94, 492, 867
BstDSI	CCRYGG	1 cut(s)	515
BstF5I	GGATG	1 cut(s)	238
BstHHI	GCGC	1 cut(s)	74
BstKTI	GATC	7 cut(s)	80, 137, 285, 613, 633, 676, 756
BstMAI	GTCTC	4 cut(s)	180, 212, 454, 685
BstMBI	GATC	7 cut(s)	77, 134, 282, 610, 630, 673, 753
BstMWI	GCNNNNNNNGC	3 cut(s)	383, 398, 509
BstNI	CCWGG	1 cut(s)	498
BstSCI	CCNGG	1 cut(s)	496
BstSLI	GKGCMC	1 cut(s)	258
BstV2I	GAAGAC	1 cut(s)	582
BstX2I	RGATCY	2 cut(s)	77, 630
BstYI	RGATCY	2 cut(s)	77, 630
BsuRI	GGCC	5 cut(s)	84, 377, 401, 425, 646
BtgI	CCRYGG	1 cut(s)	515
BtsCI	GGATG	1 cut(s)	238
BtsI	GCAGTG	1 cut(s)	799
BtsIMutI	CAGTG	2 cut(s)	363, 799
Cac8I	GCNNGC	3 cut(s)	70, 228, 469
CfoI	GCGC	1 cut(s)	74
Cfr10I	RCCGGY	2 cut(s)	305, 373
CseI	GACGC	1 cut(s)	124
CviAII	CATG	1 cut(s)	453
DdeI	CTNAG	3 cut(s)	94, 492, 867
DpnI	GATC	7 cut(s)	79, 136, 284, 612, 632, 675, 755
DpnII	GATC	7 cut(s)	77, 134, 282, 610, 630, 673, 753
EaeI	YGGCCR	2 cut(s)	82, 375
EciI	GGCGGA	1 cut(s)	280
Eco31I	GGTCTC	1 cut(s)	180
EcoRI	GAATTC	1 cut(s)	214
EcoRII	CCWGG	1 cut(s)	496
FaeI	CATG	1 cut(s)	456
FalI	AAGNNNNNCTT	2 cut(s)	308, 340
FaqI	GGGAC	1 cut(s)	282
FatI	CATG	1 cut(s)	452
FblI	GTMKAC	1 cut(s)	351
FokI	GGATG	1 cut(s)	245
FspBI	CTAG	1 cut(s)	488
GlaI	GCGC	1 cut(s)	73
HaeIII	GGCC	5 cut(s)	84, 377, 401, 425, 646
HapII	CCGG	3 cut(s)	306, 374, 409
HgaI	GACGC	1 cut(s)	124
HhaI	GCGC	1 cut(s)	74
Hin1II	CATG	1 cut(s)	456
Hin6I	GCGC	1 cut(s)	72
HinP1I	GCGC	1 cut(s)	72
HindIII	AAGCTT	2 cut(s)	829, 861
HinfI	GANTC	5 cut(s)	205, 321, 432, 720, 761
HpaII	CCGG	3 cut(s)	306, 374, 409
HphI	GGTGA	2 cut(s)	551, 759
Hpy166II	GTNNAC	1 cut(s)	352
Hpy188I	TCNGA	5 cut(s)	32, 185, 334, 584, 868
Hpy188III	TCNNGA	7 cut(s)	49, 132, 148, 157, 211, 731, 811
Hpy8I	GTNNAC	1 cut(s)	352
Hpy99I	CGWCG	1 cut(s)	118
HpyAV	CCTTC	3 cut(s)	138, 422, 855
HpyCH4III	ACNGT	4 cut(s)	250, 356, 367, 898
HpyCH4IV	ACGT	3 cut(s)	348, 726, 780
HpyCH4V	TGCA	1 cut(s)	456
HpyF10VI	GCNNNNNNNGC	3 cut(s)	383, 398, 509
HpyF3I	CTNAG	3 cut(s)	94, 492, 867
HpySE526I	ACGT	3 cut(s)	348, 726, 780
Hsp92II	CATG	1 cut(s)	456
HspAI	GCGC	1 cut(s)	72
Kzo9I	GATC	7 cut(s)	77, 134, 282, 610, 630, 673, 753
LmnI	GCTCC	1 cut(s)	517
LweI	GCATC	1 cut(s)	774
MaeI	CTAG	1 cut(s)	488
MaeII	ACGT	3 cut(s)	348, 726, 780
MaeIII	GTNAC	1 cut(s)	797
MalI	GATC	7 cut(s)	79, 136, 284, 612, 632, 675, 755
MboI	GATC	7 cut(s)	77, 134, 282, 610, 630, 673, 753
MboII	GAAGA	4 cut(s)	454, 584, 587, 746
MfeI	CAATTG	1 cut(s)	417
MflI	RGATCY	2 cut(s)	77, 630
MhlI	GDGCHC	1 cut(s)	258
MlsI	TGGCCA	1 cut(s)	84
MluCI	AATT	4 cut(s)	109, 151, 214, 417
MluNI	TGGCCA	1 cut(s)	84
MlyI	GAGTC	1 cut(s)	214
Mox20I	TGGCCA	1 cut(s)	84
MscI	TGGCCA	1 cut(s)	84
MseI	TTAA	2 cut(s)	297, 315
Msp20I	TGGCCA	1 cut(s)	84
MspI	CCGG	3 cut(s)	306, 374, 409
MspR9I	CCNGG	1 cut(s)	498
MunI	CAATTG	1 cut(s)	417
MvaI	CCWGG	1 cut(s)	498
MwoI	GCNNNNNNNGC	3 cut(s)	383, 398, 509
NdeII	GATC	7 cut(s)	77, 134, 282, 610, 630, 673, 753
NlaIII	CATG	1 cut(s)	456
NlaIV	GGNNCC	1 cut(s)	548
NmeAIII	GCCGAG	1 cut(s)	144
NmuCI	GTSAC	1 cut(s)	797
NspV	TTCGAA	1 cut(s)	106
PfeI	GAWTC	4 cut(s)	321, 432, 720, 761
PleI	GAGTC	1 cut(s)	213
PpsI	GAGTC	1 cut(s)	213
Psp6I	CCWGG	1 cut(s)	496
PspGI	CCWGG	1 cut(s)	496
PspN4I	GGNNCC	1 cut(s)	548
PsuI	RGATCY	2 cut(s)	77, 630
SaqAI	TTAA	2 cut(s)	297, 315
Sau3AI	GATC	7 cut(s)	77, 134, 282, 610, 630, 673, 753
SchI	GAGTC	1 cut(s)	214
ScrFI	CCNGG	1 cut(s)	498
SduI	GDGCHC	1 cut(s)	258
SfaNI	GCATC	1 cut(s)	774
SfuI	TTCGAA	1 cut(s)	106
Sse9I	AATT	4 cut(s)	109, 151, 214, 417
SsiI	CCGC	2 cut(s)	230, 291
SspMI	CTAG	1 cut(s)	488
StyD4I	CCNGG	1 cut(s)	496
TaaI	ACNGT	4 cut(s)	250, 356, 367, 898
TaiI	ACGT	3 cut(s)	351, 729, 783
TaqI	TCGA	6 cut(s)	106, 113, 147, 218, 369, 840
TasI	AATT	4 cut(s)	109, 151, 214, 417
TfiI	GAWTC	4 cut(s)	321, 432, 720, 761
Tru1I	TTAA	2 cut(s)	297, 315
Tru9I	TTAA	2 cut(s)	297, 315
TscAI	CASTG	2 cut(s)	370, 806
TseFI	GTSAC	1 cut(s)	797
Tsp45I	GTSAC	1 cut(s)	797
TspDTI	ATGAA	3 cut(s)	16, 668, 918
TspRI	CASTG	2 cut(s)	370, 806
XapI	RAATTY	3 cut(s)	109, 151, 214
XmiI	GTMKAC	1 cut(s)	351
XspI	CTAG	1 cut(s)	488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.