Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0005597

Physical Location & Seq

Genomic Coordinates Forward (+)

6291728 .. 6293889

Gene Structure 2162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g05770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGACTTCTCAGCTATCCACTTATTCCTCATCTCCCTCGGAACCCTCTCGCTCGCCTTCTTTCTCAAACTCATCCCATTCCGATTCCCCCCAATCCCATTCCGGATGGCATCCAAGTCCAAAATCCTCTTCATCGGTGGCACCGGCTACATCGGAAAGTTCATTGTCGAGGCCAGCGCCAAGGCCGGCCACCCCACCTACGTTCTGGTCCGAGAAACTACCGTGTCCAACCCGGCAAAGTCCAAAGTCATCGAGAACTTCAAGGCTCTGGGCGTCAACTTCGTCCTGGGTGATCTGTACGATCACGAGAGCTTGGTGAAGGCGATCAAGCAAGTCGACGTGGTGATCTCGACGGTGGGGCATGCGCAGTTGGCTGATCAGGGCACGATCATTGCTGCCATAAAAGAAGCAGGCAATGTTAAGAGATTTTTCCCCTCGGAGTTTGGAAATGACGTTGACCGAGTTCACGCTGTTGAGCCTGCCAAATCGGCGTTTGAGACCAAGGCCAAGATTCGCAGAGCTGTGGAGGCTGAGGGGATTCCTTACACCTATGTGTCCTCCAACTTCTTTGCTGGTTACTTCTTGCCTACTTTGAACCAGCCCGGAGCTTCTTCCCCTCCTAGGAACAAAGTCGTCATTTTGGGCGATGGAAACCCCAAAGCAATTTTCAACAAGGAAGACGACATTGGGACGTACACAATTAGGGCAGTGGATGACCCAAGAACCTTGAACAAAGTCCTCTACATCAGGCCACCTGCCAACGCCATCTCATTCAATGAGCTTGTCTCTCTGTGGGAGAAGAAGATTGGCAAAACCCTCGAGAGAATCTATGTCCCGGAGGAGCAGCTGCTCAAGAACATCCAAGAGGCAGCGGTGCCGCTCAATGTGATACTATCAATTGGTCACTCGGTTTTTGTGAAGGGAGACCACACTAACTTTGAGATCGAGCCCTCATTTGGCGTGGAAGCCACAGCTCTTTACCCTGATGTCAAATACACCACCGTCGATGAGTACCTCAACCAGTTTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009806 GO:0009807 GO:0009987 GO:0010035 GO:0010038 GO:0016491 GO:0016651 GO:0019438 GO:0019748 GO:0042221 GO:0044237 GO:0044249 GO:0044550 GO:0046686 GO:0050664 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

344

Amino Acids

37.85

Weight (kDa)

7.82

Isoelectric Point (pI)

26.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	39 - 339	9.8e-98	NmrA-like family
Epimerase	PF01370	42 - 122	5.6e-09	NAD dependent epimerase/dehydratase family
NAD_binding_10	PF13460	46 - 187	1.8e-13	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39230
fragaria_vesca	FvH4_2g09110 FvH4_2g09120
malus_domestica	MD10G1073200.v1.1 MD10G1073500.v1.1
prunus_persica	Prupe.8G094500_v2.0.a1
pyrus_communis	pycom10g05770 pycom10g05780
rosa_chinensis	RchiOBHm_Chr6g0265001 RchiOBHm_Chr6g0265011
rosa_laevigata	RLG00000014216 RLG00000014221 RLG00000014224
rosa_multiflora	Rmu_sc0000546.1_g000080 Rmu_sc0002934.1_g000023
rosa_roxburghii	Rroxscaffold_175G00432080 Rroxscaffold_175G00432090 Rroxscaffold_7G00203100 Rroxscaffold_7G00203110
rosa_rugosa	Rorug06G0013800 Rorug06G0013900
rosa_samantha	Rh6AG136100 Rh6BG132900 Rh6BG133100 Rh6DG118700 Rh6DG118900
rosa_wichuraiana	Rw6G011720 Rw6G011730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	763
Acc16I	TGCGCA	1 cut(s)	366
Acc36I	ACCTGC	1 cut(s)	763
AccB1I	GGYRCC	2 cut(s)	140, 874
AccBSI	CCGCTC	1 cut(s)	880
AccI	GTMKAC	1 cut(s)	336
AccIII	TCCGGA	1 cut(s)	102
AciI	CCGC	2 cut(s)	872, 878
AcoI	YGGCCR	1 cut(s)	187
AcyI	GRCGYC	1 cut(s)	273
AfaI	GTAC	3 cut(s)	299, 695, 1013
AfiI	CCNNNNNNNGG	2 cut(s)	621, 956
AgsI	TTSAA	5 cut(s)	262, 595, 670, 730, 775
AjiI	CACGTC	1 cut(s)	340
AjnI	CCWGG	1 cut(s)	285
AjuI	GAANNNNNNNTTGG	6 cut(s)	113, 145, 650, 669, 682, 701
AleI	CACNNNNGTG	1 cut(s)	551
AluBI	AGCT	7 cut(s)	14, 312, 521, 608, 781, 847, 974
AluI	AGCT	7 cut(s)	14, 312, 521, 608, 781, 847, 974
Alw26I	GTCTC	3 cut(s)	491, 790, 918
Ama87I	CYCGRG	1 cut(s)	818
Aor13HI	TCCGGA	1 cut(s)	102
AoxI	GGCC	5 cut(s)	171, 183, 187, 504, 749
ApeKI	GCWGC	4 cut(s)	395, 844, 847, 869
AspA2I	CCTAGG	1 cut(s)	620
AspLEI	GCGC	2 cut(s)	179, 367
AspS9I	GGNCC	1 cut(s)	208
AsuC2I	CCSGG	3 cut(s)	233, 603, 836
AsuHPI	GGTGA	3 cut(s)	302, 328, 355
AvaI	CYCGRG	1 cut(s)	818
AvaII	GGWCC	1 cut(s)	208
AvrII	CCTAGG	1 cut(s)	620
BaeGI	GKGCMC	1 cut(s)	386
BanI	GGYRCC	2 cut(s)	140, 874
BanII	GRGCYC	1 cut(s)	951
BauI	CACGAG	1 cut(s)	305
BbsI	GAAGAC	1 cut(s)	684
BbvCI	CCTCAGC	1 cut(s)	531
BbvI	GCAGC	4 cut(s)	382, 834, 856, 881
BccI	CCATC	3 cut(s)	100, 641, 773
BcgI	CGANNNNNNTGC	2 cut(s)	799, 833
BciT130I	CCWGG	1 cut(s)	287
BclI	TGATCA	1 cut(s)	376
BcnI	CCSGG	3 cut(s)	233, 603, 836
BcoDI	GTCTC	3 cut(s)	491, 790, 918
BfaI	CTAG	1 cut(s)	621
BfoI	RGCGCY	1 cut(s)	180
BfuAI	ACCTGC	1 cut(s)	763
BglI	GCCNNNNNGGC	1 cut(s)	488
BisI	GCNGC	5 cut(s)	396, 845, 848, 870, 878
BlnI	CCTAGG	1 cut(s)	620
BlsI	GCNGC	5 cut(s)	397, 846, 849, 871, 879
Bme1390I	CCNGG	4 cut(s)	233, 287, 603, 836
Bme18I	GGWCC	1 cut(s)	208
BmeT110I	CYCGRG	1 cut(s)	818
BmgBI	CACGTC	1 cut(s)	340
BmgT120I	GGNCC	1 cut(s)	208
BmiI	GGNNCC	3 cut(s)	43, 142, 876
BmrFI	CCNGG	4 cut(s)	233, 287, 603, 836
BmsI	GCATC	1 cut(s)	119
BpiI	GAAGAC	1 cut(s)	684
BplI	GAGNNNNNCTC	2 cut(s)	770, 802
Bpu10I	CCTNAGC	1 cut(s)	531
BpuEI	CTTGAG	1 cut(s)	836
BpuMI	CCSGG	3 cut(s)	233, 603, 836
BsaHI	GRCGYC	1 cut(s)	273
BsaI	GGTCTC	2 cut(s)	491, 918
BsaJI	CCNNGG	6 cut(s)	37, 180, 286, 435, 501, 620
BsaWI	WCCGGW	1 cut(s)	102
Bsc4I	CCNNNNNNNGG	2 cut(s)	621, 956
Bse118I	RCCGGY	2 cut(s)	143, 185
Bse1I	ACTGG	1 cut(s)	1021
Bse3DI	GCAATG	2 cut(s)	390, 421
BseAI	TCCGGA	1 cut(s)	102
BseBI	CCWGG	1 cut(s)	287
BseDI	CCNNGG	6 cut(s)	37, 180, 286, 435, 501, 620
BseGI	GGATG	5 cut(s)	72, 110, 111, 718, 858
BseLI	CCNNNNNNNGG	2 cut(s)	621, 956
BseMI	GCAATG	2 cut(s)	390, 421
BseMII	CTCAG	2 cut(s)	24, 522
BseNI	ACTGG	1 cut(s)	1021
BseRI	GAGGAG	1 cut(s)	854
BseSI	GKGCMC	1 cut(s)	386
BseXI	GCAGC	4 cut(s)	382, 834, 856, 881
BshFI	GGCC	5 cut(s)	173, 185, 189, 506, 751
BshNI	GGYRCC	2 cut(s)	140, 874
BsiHKCI	CYCGRG	1 cut(s)	818
BsiSI	CCGG	6 cut(s)	103, 144, 186, 233, 603, 836
BslFI	GGGAC	2 cut(s)	703, 818
BslI	CCNNNNNNNGG	2 cut(s)	621, 956
BsmAI	GTCTC	3 cut(s)	491, 790, 918
BsmFI	GGGAC	2 cut(s)	703, 818
BsnI	GGCC	5 cut(s)	173, 185, 189, 506, 751
Bso31I	GGTCTC	2 cut(s)	491, 918
BsoBI	CYCGRG	1 cut(s)	818
Bsp1286I	GDGCHC	2 cut(s)	386, 951
Bsp13I	TCCGGA	1 cut(s)	102
Bsp143I	GATC	7 cut(s)	292, 301, 324, 345, 376, 387, 942
BspACI	CCGC	2 cut(s)	872, 878
BspANI	GGCC	5 cut(s)	173, 185, 189, 506, 751
BspCNI	CTCAG	2 cut(s)	23, 523
BspEI	TCCGGA	1 cut(s)	102
BspLI	GGNNCC	3 cut(s)	43, 142, 876
BspMI	ACCTGC	1 cut(s)	763
BspT107I	GGYRCC	2 cut(s)	140, 874
BspTNI	GGTCTC	2 cut(s)	491, 918
BsrBI	CCGCTC	1 cut(s)	880
BsrDI	GCAATG	2 cut(s)	390, 421
BsrFI	RCCGGY	2 cut(s)	143, 185
BsrI	ACTGG	1 cut(s)	1021
BssAI	RCCGGY	2 cut(s)	143, 185
BssECI	CCNNGG	6 cut(s)	37, 180, 286, 435, 501, 620
BssMI	GATC	7 cut(s)	292, 301, 324, 345, 376, 387, 942
BssNI	GRCGYC	1 cut(s)	273
BssSI	CACGAG	1 cut(s)	305
BssT1I	CCWWGG	3 cut(s)	180, 501, 620
Bst2BI	CACGAG	1 cut(s)	305
Bst2UI	CCWGG	1 cut(s)	287
Bst4CI	ACNGT	3 cut(s)	223, 355, 1003
Bst6I	CTCTTC	1 cut(s)	134
BstACI	GRCGYC	1 cut(s)	273
BstC8I	GCNNGC	6 cut(s)	54, 175, 187, 363, 412, 480
BstDEI	CTNAG	2 cut(s)	10, 531
BstF5I	GGATG	5 cut(s)	72, 110, 111, 718, 858
BstH2I	RGCGCY	1 cut(s)	180
BstHHI	GCGC	2 cut(s)	179, 367
BstKTI	GATC	7 cut(s)	295, 304, 327, 348, 379, 390, 945
BstMAI	GTCTC	3 cut(s)	491, 790, 918
BstMBI	GATC	7 cut(s)	292, 301, 324, 345, 376, 387, 942
BstMWI	GCNNNNNNNGC	3 cut(s)	371, 488, 527
BstNI	CCWGG	1 cut(s)	287
BstNSI	RCATGY	1 cut(s)	365
BstSCI	CCNGG	4 cut(s)	231, 285, 601, 834
BstSLI	GKGCMC	1 cut(s)	386
BstV1I	GCAGC	4 cut(s)	382, 834, 856, 881
BstV2I	GAAGAC	1 cut(s)	684
BsuRI	GGCC	5 cut(s)	173, 185, 189, 506, 751
BtgZI	GCGATG	1 cut(s)	660
BtrI	CACGTC	1 cut(s)	340
BtsCI	GGATG	5 cut(s)	72, 110, 111, 718, 858
BtsI	GCAGTG	1 cut(s)	714
BtsIMutI	CAGTG	1 cut(s)	714
BveI	ACCTGC	1 cut(s)	763
Cac8I	GCNNGC	6 cut(s)	54, 175, 187, 363, 412, 480
CfoI	GCGC	2 cut(s)	179, 367
Cfr10I	RCCGGY	2 cut(s)	143, 185
Cfr13I	GGNCC	1 cut(s)	208
CseI	GACGC	1 cut(s)	262
Csp6I	GTAC	3 cut(s)	298, 694, 1012
CviAII	CATG	1 cut(s)	362
CviQI	GTAC	3 cut(s)	298, 694, 1012
DdeI	CTNAG	2 cut(s)	10, 531
DpnI	GATC	7 cut(s)	294, 303, 326, 347, 378, 389, 944
DpnII	GATC	7 cut(s)	292, 301, 324, 345, 376, 387, 942
EaeI	YGGCCR	1 cut(s)	187
Eam1104I	CTCTTC	1 cut(s)	134
EarI	CTCTTC	1 cut(s)	134
Eco130I	CCWWGG	3 cut(s)	180, 501, 620
Eco24I	GRGCYC	1 cut(s)	951
Eco31I	GGTCTC	2 cut(s)	491, 918
Eco47I	GGWCC	1 cut(s)	208
Eco88I	CYCGRG	1 cut(s)	818
EcoRII	CCWGG	1 cut(s)	285
EcoT14I	CCWWGG	3 cut(s)	180, 501, 620
EcoT38I	GRGCYC	1 cut(s)	951
ErhI	CCWWGG	3 cut(s)	180, 501, 620
FaeI	CATG	1 cut(s)	365
FaiI	YATR	4 cut(s)	363, 401, 552, 831
FaqI	GGGAC	2 cut(s)	703, 818
FatI	CATG	1 cut(s)	361
FbaI	TGATCA	1 cut(s)	376
FblI	GTMKAC	1 cut(s)	336
Fnu4HI	GCNGC	5 cut(s)	396, 845, 848, 870, 878
FokI	GGATG	5 cut(s)	59, 97, 118, 725, 845
FriOI	GRGCYC	1 cut(s)	951
FseI	GGCCGGCC	1 cut(s)	189
Fsp4HI	GCNGC	5 cut(s)	396, 845, 848, 870, 878
FspBI	CTAG	1 cut(s)	621
FspI	TGCGCA	1 cut(s)	366
GlaI	GCGC	2 cut(s)	178, 366
GluI	GCNGC	5 cut(s)	396, 845, 848, 870, 878
HaeII	RGCGCY	1 cut(s)	180
HaeIII	GGCC	5 cut(s)	173, 185, 189, 506, 751
HapII	CCGG	6 cut(s)	103, 144, 186, 233, 603, 836
HgaI	GACGC	1 cut(s)	262
HhaI	GCGC	2 cut(s)	179, 367
Hin1I	GRCGYC	1 cut(s)	273
Hin1II	CATG	1 cut(s)	365
Hin6I	GCGC	2 cut(s)	177, 365
HinP1I	GCGC	2 cut(s)	177, 365
HincII	GTYRAC	3 cut(s)	277, 337, 457
HindII	GTYRAC	3 cut(s)	277, 337, 457
HinfI	GANTC	4 cut(s)	84, 511, 538, 825
HpaII	CCGG	6 cut(s)	103, 144, 186, 233, 603, 836
HphI	GGTGA	3 cut(s)	302, 328, 355
Hpy166II	GTNNAC	5 cut(s)	277, 337, 457, 466, 696
Hpy188I	TCNGA	6 cut(s)	41, 83, 155, 212, 439, 1031
Hpy188III	TCNNGA	6 cut(s)	103, 253, 305, 349, 820, 853
Hpy8I	GTNNAC	5 cut(s)	277, 337, 457, 466, 696
Hpy99I	CGWCG	3 cut(s)	341, 355, 1007
HpyAV	CCTTC	3 cut(s)	67, 313, 913
HpyCH4III	ACNGT	3 cut(s)	223, 355, 1003
HpyCH4IV	ACGT	4 cut(s)	201, 339, 453, 692
HpyF10VI	GCNNNNNNNGC	3 cut(s)	371, 488, 527
HpyF3I	CTNAG	2 cut(s)	10, 531
HpySE526I	ACGT	4 cut(s)	201, 339, 453, 692
Hsp92I	GRCGYC	1 cut(s)	273
Hsp92II	CATG	1 cut(s)	365
HspAI	GCGC	2 cut(s)	177, 365
Kpn2I	TCCGGA	1 cut(s)	102
KroI	GCCGGC	1 cut(s)	185
KroNI	GCCGGC	1 cut(s)	187
Ksp22I	TGATCA	1 cut(s)	376
Kzo9I	GATC	7 cut(s)	292, 301, 324, 345, 376, 387, 942
LmnI	GCTCC	2 cut(s)	605, 841
Lsp1109I	GCAGC	4 cut(s)	382, 834, 856, 881
LweI	GCATC	1 cut(s)	119
MaeI	CTAG	1 cut(s)	621
MaeII	ACGT	4 cut(s)	201, 339, 453, 692
MaeIII	GTNAC	2 cut(s)	575, 902
MalI	GATC	7 cut(s)	294, 303, 326, 347, 378, 389, 944
MbiI	CCGCTC	1 cut(s)	880
MboI	GATC	7 cut(s)	292, 301, 324, 345, 376, 387, 942
MboII	GAAGA	5 cut(s)	121, 603, 689, 811, 814
MfeI	CAATTG	1 cut(s)	897
MhlI	GDGCHC	2 cut(s)	386, 951
MluCI	AATT	3 cut(s)	663, 699, 897
MmeI	TCCRAC	2 cut(s)	252, 585
MroI	TCCGGA	1 cut(s)	102
MroNI	GCCGGC	1 cut(s)	185
MseI	TTAA	1 cut(s)	420
MslI	CAYNNNNRTG	1 cut(s)	551
MspA1I	CMGCKG	2 cut(s)	847, 872
MspI	CCGG	6 cut(s)	103, 144, 186, 233, 603, 836
MspR9I	CCNGG	4 cut(s)	233, 287, 603, 836
MunI	CAATTG	1 cut(s)	897
MvaI	CCWGG	1 cut(s)	287
MwoI	GCNNNNNNNGC	3 cut(s)	371, 488, 527
NaeI	GCCGGC	1 cut(s)	187
NciI	CCSGG	3 cut(s)	233, 603, 836
NdeII	GATC	7 cut(s)	292, 301, 324, 345, 376, 387, 942
NgoMIV	GCCGGC	1 cut(s)	185
NlaIII	CATG	1 cut(s)	365
NlaIV	GGNNCC	3 cut(s)	43, 142, 876
NmuCI	GTSAC	1 cut(s)	902
NsbI	TGCGCA	1 cut(s)	366
NspI	RCATGY	1 cut(s)	365
OliI	CACNNNNGTG	1 cut(s)	551
PaeI	GCATGC	1 cut(s)	365
PaeR7I	CTCGAG	1 cut(s)	818
PaqCI	CACCTGC	1 cut(s)	763
PdiI	GCCGGC	1 cut(s)	187
PfeI	GAWTC	4 cut(s)	84, 511, 538, 825
PfoI	TCCNGGA	1 cut(s)	834
PkrI	GCNGC	5 cut(s)	397, 846, 849, 871, 879
Psp6I	CCWGG	1 cut(s)	285
PspGI	CCWGG	1 cut(s)	285
PspN4I	GGNNCC	3 cut(s)	43, 142, 876
PspPI	GGNCC	1 cut(s)	208
PvuII	CAGCTG	1 cut(s)	847
RigI	GGCCGGCC	1 cut(s)	189
RsaI	GTAC	3 cut(s)	299, 695, 1013
RsaNI	GTAC	3 cut(s)	298, 694, 1012
RseI	CAYNNNNRTG	1 cut(s)	551
SalI	GTCGAC	1 cut(s)	335
SaqAI	TTAA	1 cut(s)	420
SatI	GCNGC	5 cut(s)	396, 845, 848, 870, 878
Sau3AI	GATC	7 cut(s)	292, 301, 324, 345, 376, 387, 942
Sau96I	GGNCC	1 cut(s)	208
ScrFI	CCNGG	4 cut(s)	233, 287, 603, 836
SduI	GDGCHC	2 cut(s)	386, 951
SfaNI	GCATC	1 cut(s)	119
Sfr274I	CTCGAG	1 cut(s)	818
SinI	GGWCC	1 cut(s)	208
SlaI	CTCGAG	1 cut(s)	818
SmiMI	CAYNNNNRTG	1 cut(s)	551
SmlI	CTYRAG	2 cut(s)	818, 851
SmoI	CTYRAG	2 cut(s)	818, 851
SphI	GCATGC	1 cut(s)	365
Sse9I	AATT	3 cut(s)	663, 699, 897
SsiI	CCGC	2 cut(s)	872, 878
SspMI	CTAG	1 cut(s)	621
StyD4I	CCNGG	4 cut(s)	231, 285, 601, 834
StyI	CCWWGG	3 cut(s)	180, 501, 620
TaaI	ACNGT	3 cut(s)	223, 355, 1003
TaiI	ACGT	4 cut(s)	204, 342, 456, 695
TaqI	TCGA	7 cut(s)	168, 252, 336, 350, 819, 945, 1005
TaqII	GACCGA	1 cut(s)	474
TasI	AATT	3 cut(s)	663, 699, 897
TauI	GCSGC	1 cut(s)	880
TfiI	GAWTC	4 cut(s)	84, 511, 538, 825
Tru1I	TTAA	1 cut(s)	420
Tru9I	TTAA	1 cut(s)	420
TscAI	CASTG	1 cut(s)	714
TseFI	GTSAC	1 cut(s)	902
TseI	GCWGC	4 cut(s)	395, 844, 847, 869
Tsp45I	GTSAC	1 cut(s)	902
TspDTI	ATGAA	2 cut(s)	121, 151
TspRI	CASTG	1 cut(s)	714
VpaK11BI	GGWCC	1 cut(s)	208
XceI	RCATGY	1 cut(s)	365
XcmI	CCANNNNNNNNNTGG	1 cut(s)	202
XhoI	CTCGAG	1 cut(s)	818
XmaJI	CCTAGG	1 cut(s)	620
XmiI	GTMKAC	1 cut(s)	336
XspI	CTAG	1 cut(s)	621

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.