Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0005597

Physical Location & Seq

Genomic Coordinates Reverse (-)

10267777 .. 10270162

Gene Structure 2386 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1073500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGACTTCTCAGTTACCCACTTATTCCTCCTTTCCCTCGCAACGCTCTCACTCGCTCTCTCTCTCCAACTCATCCCATTCCGATTTCCCAGATTCCCATTCCCGATGGCTTCCAAGTCCAAAATCCTCTTCATCGGCGGCACCGGCTACATTGGAAAGTTCATCGTCGAGGCCAGCGCCAAGGCCGGGCACCCCACCTACGTTCTGGTTCGAGAAGCTACCCTCTCCAACCCGGCGAAATCCAAAGTCATCGAGAACTTCAAGGCCCTGGGCGTCAATTTCGTCCTGGGTGATCTGTACGATCACGAGAGCTTGGTGAAGGCGATCAAGCAAGTCGACGTGGTGATCTCGACGGTGGGGCATGGTCAGTTGGCTGATCAGGGAAAGATCATTGCTGCCATCAAAGAAGCAGGCAATGTTAAGAGATTTTTCCCGTCGGAGTTTGGAAATGACGTCGATCGAGTTCACGCTGTTGAGCCTGCCAAATCGGCGTTTGAGACCAAGGCCAAGATTCGCAGAGCTGTGGAGGCTGAGGGAATTCCTTACACCTATGTGTCCTCCAACTTCTTTGCTGGTTACTTCTTGCCTACTTTGAACCAGCCCGGAGCTTCTTCTCCTCCTAGGGACAAAGTCGTCATTTTGGGCGATGGAAACCCTAAAGCAATTTTCATCAAGGAAGACGACATTGGGACGTACACAATTAGGGCAGTGGATGATCCAAGAACCTTGAACAAAGTCCTCTACATCAGGCCCCCTGCCAACACCATTTCATTCAATGAGCTTGTCTCTCTTTGGGAGAAGAAGATTGGCAAATCCCTCGAGAGAATCTATGTCCCGGAGGAGCAACTGCTCAAGAACATCCAAGAGGCATCTGTGCCGCTCAATGTGATATTAGCAATTGGTCACTCAGTTTTTGTGAAGGGAGACCACACTAACTTTGAGATCGAGCCTTCATTTGGCGTGGAAGCCACAGCTCTTTACCCTGATGTCAAATACACCACAGTCGACGAGTACCTCAACCAGTTTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009806 GO:0009807 GO:0009987 GO:0010035 GO:0010038 GO:0016491 GO:0016651 GO:0019438 GO:0019748 GO:0042221 GO:0044237 GO:0044249 GO:0044550 GO:0046686 GO:0050664 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

344

Amino Acids

37.84

Weight (kDa)

7.07

Isoelectric Point (pI)

24.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	39 - 339	7.7e-98	NmrA-like family
Epimerase	PF01370	42 - 122	1.9e-08	NAD dependent epimerase/dehydratase family
NAD_binding_10	PF13460	46 - 189	2.7e-14	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39230
fragaria_vesca	FvH4_2g09110 FvH4_2g09120
malus_domestica	MD10G1073200.v1.1 MD10G1073500.v1.1
prunus_persica	Prupe.8G094500_v2.0.a1
pyrus_communis	pycom10g05770 pycom10g05780
rosa_chinensis	RchiOBHm_Chr6g0265001 RchiOBHm_Chr6g0265011
rosa_laevigata	RLG00000014216 RLG00000014221 RLG00000014224
rosa_multiflora	Rmu_sc0000546.1_g000080 Rmu_sc0002934.1_g000023
rosa_roxburghii	Rroxscaffold_175G00432080 Rroxscaffold_175G00432090 Rroxscaffold_7G00203100 Rroxscaffold_7G00203110
rosa_rugosa	Rorug06G0013800 Rorug06G0013900
rosa_samantha	Rh6AG136100 Rh6BG132900 Rh6BG133100 Rh6DG118700 Rh6DG118900
rosa_wichuraiana	Rw6G011720 Rw6G011730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	632
AatII	GACGTC	1 cut(s)	456
AccB1I	GGYRCC	2 cut(s)	140, 189
AccBSI	CCGCTC	1 cut(s)	880
AccI	GTMKAC	2 cut(s)	336, 1005
AciI	CCGC	2 cut(s)	138, 878
AclWI	GGATC	1 cut(s)	710
AcsI	RAATTY	1 cut(s)	537
AcyI	GRCGYC	2 cut(s)	273, 453
AfaI	GTAC	3 cut(s)	299, 695, 1013
AfiI	CCNNNNNNNGG	2 cut(s)	186, 956
AgsI	TTSAA	4 cut(s)	262, 595, 730, 775
AjiI	CACGTC	1 cut(s)	340
AjnI	CCWGG	2 cut(s)	267, 285
AjuI	GAANNNNNNNTTGG	4 cut(s)	113, 145, 669, 701
AleI	CACNNNNGTG	1 cut(s)	551
AluBI	AGCT	6 cut(s)	218, 312, 521, 608, 781, 974
AluI	AGCT	6 cut(s)	218, 312, 521, 608, 781, 974
Alw26I	GTCTC	3 cut(s)	491, 790, 918
AlwI	GGATC	1 cut(s)	710
Ama87I	CYCGRG	1 cut(s)	818
AoxI	GGCC	5 cut(s)	171, 183, 264, 504, 749
ApeKI	GCWGC	1 cut(s)	395
ApoI	RAATTY	1 cut(s)	537
AspA2I	CCTAGG	1 cut(s)	620
AspLEI	GCGC	1 cut(s)	179
AspS9I	GGNCC	2 cut(s)	265, 750
AsuC2I	CCSGG	4 cut(s)	187, 233, 603, 836
AsuHPI	GGTGA	3 cut(s)	302, 328, 355
AvaI	CYCGRG	1 cut(s)	818
AvrII	CCTAGG	1 cut(s)	620
BaeGI	GKGCMC	1 cut(s)	192
BanI	GGYRCC	2 cut(s)	140, 189
BauI	CACGAG	1 cut(s)	305
BbsI	GAAGAC	1 cut(s)	684
BbvCI	CCTCAGC	1 cut(s)	531
BbvI	GCAGC	1 cut(s)	382
BccI	CCATC	3 cut(s)	100, 407, 641
BcgI	CGANNNNNNTGC	2 cut(s)	799, 833
BciT130I	CCWGG	2 cut(s)	269, 287
BclI	TGATCA	1 cut(s)	376
BcnI	CCSGG	4 cut(s)	187, 233, 603, 836
BcoDI	GTCTC	3 cut(s)	491, 790, 918
BfaI	CTAG	1 cut(s)	621
BfoI	RGCGCY	1 cut(s)	180
BglI	GCCNNNNNGGC	1 cut(s)	488
BisI	GCNGC	3 cut(s)	139, 396, 878
BlnI	CCTAGG	1 cut(s)	620
BlsI	GCNGC	3 cut(s)	140, 397, 879
Bme1390I	CCNGG	6 cut(s)	187, 233, 269, 287, 603, 836
BmeT110I	CYCGRG	1 cut(s)	818
BmgBI	CACGTC	1 cut(s)	340
BmgT120I	GGNCC	2 cut(s)	265, 750
BmiI	GGNNCC	3 cut(s)	142, 191, 752
BmrFI	CCNGG	6 cut(s)	187, 233, 269, 287, 603, 836
BmsI	GCATC	1 cut(s)	878
BpiI	GAAGAC	1 cut(s)	684
BplI	GAGNNNNNCTC	2 cut(s)	770, 802
Bpu10I	CCTNAGC	1 cut(s)	531
BpuEI	CTTGAG	1 cut(s)	836
BpuMI	CCSGG	4 cut(s)	187, 233, 603, 836
BsaHI	GRCGYC	2 cut(s)	273, 453
BsaI	GGTCTC	2 cut(s)	491, 918
BsaJI	CCNNGG	6 cut(s)	180, 267, 268, 286, 501, 620
Bsc4I	CCNNNNNNNGG	2 cut(s)	186, 956
Bse118I	RCCGGY	1 cut(s)	143
Bse1I	ACTGG	1 cut(s)	1021
Bse3DI	GCAATG	2 cut(s)	390, 421
BseBI	CCWGG	2 cut(s)	269, 287
BseDI	CCNNGG	6 cut(s)	180, 267, 268, 286, 501, 620
BseGI	GGATG	3 cut(s)	72, 718, 858
BseLI	CCNNNNNNNGG	2 cut(s)	186, 956
BseMI	GCAATG	2 cut(s)	390, 421
BseMII	CTCAG	3 cut(s)	24, 522, 921
BseNI	ACTGG	1 cut(s)	1021
BseRI	GAGGAG	2 cut(s)	606, 854
BseSI	GKGCMC	1 cut(s)	192
BseXI	GCAGC	1 cut(s)	382
Bsh1285I	CGRYCG	1 cut(s)	460
BshFI	GGCC	5 cut(s)	173, 185, 266, 506, 751
BshNI	GGYRCC	2 cut(s)	140, 189
BsiEI	CGRYCG	1 cut(s)	460
BsiHKCI	CYCGRG	1 cut(s)	818
BsiSI	CCGG	5 cut(s)	144, 186, 233, 603, 836
BslFI	GGGAC	3 cut(s)	638, 703, 818
BslI	CCNNNNNNNGG	2 cut(s)	186, 956
BsmAI	GTCTC	3 cut(s)	491, 790, 918
BsmFI	GGGAC	3 cut(s)	638, 703, 818
BsnI	GGCC	5 cut(s)	173, 185, 266, 506, 751
Bso31I	GGTCTC	2 cut(s)	491, 918
BsoBI	CYCGRG	1 cut(s)	818
Bsp1286I	GDGCHC	1 cut(s)	192
Bsp143I	GATC	9 cut(s)	292, 301, 324, 345, 376, 387, 457, 715, 942
BspACI	CCGC	2 cut(s)	138, 878
BspANI	GGCC	5 cut(s)	173, 185, 266, 506, 751
BspCNI	CTCAG	3 cut(s)	23, 523, 920
BspLI	GGNNCC	3 cut(s)	142, 191, 752
BspPI	GGATC	1 cut(s)	710
BspT107I	GGYRCC	2 cut(s)	140, 189
BspTNI	GGTCTC	2 cut(s)	491, 918
BsrBI	CCGCTC	1 cut(s)	880
BsrDI	GCAATG	2 cut(s)	390, 421
BsrFI	RCCGGY	1 cut(s)	143
BsrI	ACTGG	1 cut(s)	1021
BssAI	RCCGGY	1 cut(s)	143
BssECI	CCNNGG	6 cut(s)	180, 267, 268, 286, 501, 620
BssMI	GATC	9 cut(s)	292, 301, 324, 345, 376, 387, 457, 715, 942
BssNI	GRCGYC	2 cut(s)	273, 453
BssSI	CACGAG	1 cut(s)	305
BssT1I	CCWWGG	3 cut(s)	180, 501, 620
Bst2BI	CACGAG	1 cut(s)	305
Bst2UI	CCWGG	2 cut(s)	269, 287
Bst4CI	ACNGT	2 cut(s)	355, 1003
Bst6I	CTCTTC	1 cut(s)	134
BstACI	GRCGYC	2 cut(s)	273, 453
BstC8I	GCNNGC	3 cut(s)	175, 412, 480
BstDEI	CTNAG	3 cut(s)	10, 531, 907
BstF5I	GGATG	3 cut(s)	72, 718, 858
BstH2I	RGCGCY	1 cut(s)	180
BstHHI	GCGC	1 cut(s)	179
BstKTI	GATC	9 cut(s)	295, 304, 327, 348, 379, 390, 460, 718, 945
BstMAI	GTCTC	3 cut(s)	491, 790, 918
BstMBI	GATC	9 cut(s)	292, 301, 324, 345, 376, 387, 457, 715, 942
BstMCI	CGRYCG	1 cut(s)	460
BstMWI	GCNNNNNNNGC	3 cut(s)	144, 488, 527
BstNI	CCWGG	2 cut(s)	269, 287
BstSCI	CCNGG	6 cut(s)	185, 231, 267, 285, 601, 834
BstSLI	GKGCMC	1 cut(s)	192
BstV1I	GCAGC	1 cut(s)	382
BstV2I	GAAGAC	1 cut(s)	684
BsuRI	GGCC	5 cut(s)	173, 185, 266, 506, 751
BtgZI	GCGATG	1 cut(s)	660
BtrI	CACGTC	1 cut(s)	340
BtsCI	GGATG	3 cut(s)	72, 718, 858
BtsI	GCAGTG	1 cut(s)	714
BtsIMutI	CAGTG	1 cut(s)	714
Cac8I	GCNNGC	3 cut(s)	175, 412, 480
CfoI	GCGC	1 cut(s)	179
Cfr10I	RCCGGY	1 cut(s)	143
Cfr13I	GGNCC	2 cut(s)	265, 750
CseI	GACGC	1 cut(s)	262
Csp6I	GTAC	3 cut(s)	298, 694, 1012
CviAII	CATG	1 cut(s)	362
CviQI	GTAC	3 cut(s)	298, 694, 1012
DdeI	CTNAG	3 cut(s)	10, 531, 907
DpnI	GATC	9 cut(s)	294, 303, 326, 347, 378, 389, 459, 717, 944
DpnII	GATC	9 cut(s)	292, 301, 324, 345, 376, 387, 457, 715, 942
DrdI	GACNNNNNNGTC	1 cut(s)	632
DseDI	GACNNNNNNGTC	1 cut(s)	632
Eam1104I	CTCTTC	1 cut(s)	134
EarI	CTCTTC	1 cut(s)	134
Eco130I	CCWWGG	3 cut(s)	180, 501, 620
Eco31I	GGTCTC	2 cut(s)	491, 918
Eco88I	CYCGRG	1 cut(s)	818
EcoO109I	RGGNCCY	2 cut(s)	265, 750
EcoRI	GAATTC	1 cut(s)	537
EcoRII	CCWGG	2 cut(s)	267, 285
EcoT14I	CCWWGG	3 cut(s)	180, 501, 620
ErhI	CCWWGG	3 cut(s)	180, 501, 620
FaeI	CATG	1 cut(s)	365
FaiI	YATR	3 cut(s)	363, 552, 831
FaqI	GGGAC	3 cut(s)	638, 703, 818
FatI	CATG	1 cut(s)	361
FbaI	TGATCA	1 cut(s)	376
FblI	GTMKAC	2 cut(s)	336, 1005
Fnu4HI	GCNGC	3 cut(s)	139, 396, 878
FokI	GGATG	3 cut(s)	59, 725, 845
Fsp4HI	GCNGC	3 cut(s)	139, 396, 878
FspBI	CTAG	1 cut(s)	621
GlaI	GCGC	1 cut(s)	178
GluI	GCNGC	3 cut(s)	139, 396, 878
HaeII	RGCGCY	1 cut(s)	180
HaeIII	GGCC	5 cut(s)	173, 185, 266, 506, 751
HapII	CCGG	5 cut(s)	144, 186, 233, 603, 836
HgaI	GACGC	1 cut(s)	262
HhaI	GCGC	1 cut(s)	179
Hin1I	GRCGYC	2 cut(s)	273, 453
Hin1II	CATG	1 cut(s)	365
Hin6I	GCGC	1 cut(s)	177
HinP1I	GCGC	1 cut(s)	177
HincII	GTYRAC	2 cut(s)	337, 1006
HindII	GTYRAC	2 cut(s)	337, 1006
HinfI	GANTC	3 cut(s)	93, 511, 825
HpaII	CCGG	5 cut(s)	144, 186, 233, 603, 836
HphI	GGTGA	3 cut(s)	302, 328, 355
Hpy166II	GTNNAC	4 cut(s)	337, 466, 696, 1006
Hpy188I	TCNGA	3 cut(s)	83, 439, 1031
Hpy188III	TCNNGA	7 cut(s)	103, 212, 253, 305, 349, 820, 853
Hpy8I	GTNNAC	4 cut(s)	337, 466, 696, 1006
Hpy99I	CGWCG	6 cut(s)	170, 341, 355, 439, 458, 1010
HpyAV	CCTTC	3 cut(s)	313, 913, 960
HpyCH4III	ACNGT	2 cut(s)	355, 1003
HpyCH4IV	ACGT	4 cut(s)	201, 339, 453, 692
HpyF10VI	GCNNNNNNNGC	3 cut(s)	144, 488, 527
HpyF3I	CTNAG	3 cut(s)	10, 531, 907
HpySE526I	ACGT	4 cut(s)	201, 339, 453, 692
Hsp92I	GRCGYC	2 cut(s)	273, 453
Hsp92II	CATG	1 cut(s)	365
HspAI	GCGC	1 cut(s)	177
Ksp22I	TGATCA	1 cut(s)	376
Kzo9I	GATC	9 cut(s)	292, 301, 324, 345, 376, 387, 457, 715, 942
LmnI	GCTCC	2 cut(s)	605, 841
Lsp1109I	GCAGC	1 cut(s)	382
LweI	GCATC	1 cut(s)	878
MaeI	CTAG	1 cut(s)	621
MaeII	ACGT	4 cut(s)	201, 339, 453, 692
MaeIII	GTNAC	3 cut(s)	13, 575, 902
MalI	GATC	9 cut(s)	294, 303, 326, 347, 378, 389, 459, 717, 944
MbiI	CCGCTC	1 cut(s)	880
MboI	GATC	9 cut(s)	292, 301, 324, 345, 376, 387, 457, 715, 942
MboII	GAAGA	5 cut(s)	121, 603, 689, 811, 814
MfeI	CAATTG	1 cut(s)	897
MhlI	GDGCHC	1 cut(s)	192
MluCI	AATT	5 cut(s)	277, 537, 663, 699, 897
MmeI	TCCRAC	4 cut(s)	91, 252, 417, 585
MseI	TTAA	1 cut(s)	420
MslI	CAYNNNNRTG	1 cut(s)	551
MspI	CCGG	5 cut(s)	144, 186, 233, 603, 836
MspR9I	CCNGG	6 cut(s)	187, 233, 269, 287, 603, 836
MunI	CAATTG	1 cut(s)	897
MvaI	CCWGG	2 cut(s)	269, 287
MwoI	GCNNNNNNNGC	3 cut(s)	144, 488, 527
NciI	CCSGG	4 cut(s)	187, 233, 603, 836
NdeII	GATC	9 cut(s)	292, 301, 324, 345, 376, 387, 457, 715, 942
NlaIII	CATG	1 cut(s)	365
NlaIV	GGNNCC	3 cut(s)	142, 191, 752
NmuCI	GTSAC	1 cut(s)	902
OliI	CACNNNNGTG	1 cut(s)	551
PaeR7I	CTCGAG	1 cut(s)	818
PasI	CCCWGGG	1 cut(s)	268
PfeI	GAWTC	3 cut(s)	93, 511, 825
PflFI	GACNNNGTC	1 cut(s)	629
PfoI	TCCNGGA	1 cut(s)	834
PkrI	GCNGC	3 cut(s)	140, 397, 879
Ple19I	CGATCG	1 cut(s)	460
Psp6I	CCWGG	2 cut(s)	267, 285
PspGI	CCWGG	2 cut(s)	267, 285
PspN4I	GGNNCC	3 cut(s)	142, 191, 752
PspPI	GGNCC	2 cut(s)	265, 750
PsyI	GACNNNGTC	1 cut(s)	629
PvuI	CGATCG	1 cut(s)	460
RsaI	GTAC	3 cut(s)	299, 695, 1013
RsaNI	GTAC	3 cut(s)	298, 694, 1012
RseI	CAYNNNNRTG	1 cut(s)	551
SalI	GTCGAC	2 cut(s)	335, 1004
SaqAI	TTAA	1 cut(s)	420
SatI	GCNGC	3 cut(s)	139, 396, 878
Sau3AI	GATC	9 cut(s)	292, 301, 324, 345, 376, 387, 457, 715, 942
Sau96I	GGNCC	2 cut(s)	265, 750
ScrFI	CCNGG	6 cut(s)	187, 233, 269, 287, 603, 836
SduI	GDGCHC	1 cut(s)	192
SfaNI	GCATC	1 cut(s)	878
Sfr274I	CTCGAG	1 cut(s)	818
SlaI	CTCGAG	1 cut(s)	818
SmiMI	CAYNNNNRTG	1 cut(s)	551
SmlI	CTYRAG	2 cut(s)	818, 851
SmoI	CTYRAG	2 cut(s)	818, 851
Sse9I	AATT	5 cut(s)	277, 537, 663, 699, 897
SsiI	CCGC	2 cut(s)	138, 878
SspMI	CTAG	1 cut(s)	621
StyD4I	CCNGG	6 cut(s)	185, 231, 267, 285, 601, 834
StyI	CCWWGG	3 cut(s)	180, 501, 620
TaaI	ACNGT	2 cut(s)	355, 1003
TaiI	ACGT	4 cut(s)	204, 342, 456, 695
TasI	AATT	5 cut(s)	277, 537, 663, 699, 897
TauI	GCSGC	2 cut(s)	141, 880
TfiI	GAWTC	3 cut(s)	93, 511, 825
Tru1I	TTAA	1 cut(s)	420
Tru9I	TTAA	1 cut(s)	420
TscAI	CASTG	1 cut(s)	714
TseFI	GTSAC	1 cut(s)	902
TseI	GCWGC	1 cut(s)	395
Tsp45I	GTSAC	1 cut(s)	902
TspDTI	ATGAA	5 cut(s)	121, 151, 658, 759, 942
TspRI	CASTG	1 cut(s)	714
Tth111I	GACNNNGTC	1 cut(s)	629
XapI	RAATTY	1 cut(s)	537
XcmI	CCANNNNNNNNNTGG	1 cut(s)	202
XhoI	CTCGAG	1 cut(s)	818
XmaJI	CCTAGG	1 cut(s)	620
XmiI	GTMKAC	2 cut(s)	336, 1005
XspI	CTAG	1 cut(s)	621
ZraI	GACGTC	1 cut(s)	454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.